mRNA_Ecto-sp13_S_contig15669.4193.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15669.4193.1
Unique NamemRNA_Ecto-sp13_S_contig15669.4193.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15669.4193.1 vs. uniprot
Match: D7FP68_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP68_ECTSI)

HSP 1 Score: 555 bits (1431), Expect = 4.870e-196
Identity = 361/399 (90.48%), Postives = 366/399 (91.73%), Query Frame = 1
Query:    1 MHSKAFYAIEQLKGIRDQTKSSNRRRRGDYRPLKAIVFSQFLPVLNIVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNRREGELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIMKDTMEQELRSYVNSDDKTRNAASTASPGSRWGSLSPTNGSLNGHTAHSSSPVRGAGAAGGVDGRFPANGGVGGSTSTPPRKKPREKSPWEGRGRKRPRSGGSGKRVAGGGGLSASSRQEHAKVHFLLTSLRSSKAAAAQGSXXXXXXXXXXXXXXXXXXXXX-GEGDAGTLSSARQGXXXXXXXXXXXX--KKAVRRGVTFAEDVVVVQDKAXXXXXEDPRCRGEXXXXXXXXX---AASPDRFVGWSP 1179
            MHSKAFYAIEQLKGIRD+ KSSNRRR GDYRPLKAIVFSQFLPVLNIVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNR + ELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIMKDTMEQELRSYVNSDDKTRNAA TA+PGSRWGSLSPTNGS NGHTAHSSSP+RGAGAAGGVDGRFPANGGVGGST TPPRKKPREKSPWEGRGRKRPRSGGSGKRVAGGGGLSASSRQEHAKVHFLLTSLRSSKAAA    XXXXXXXXXXXXXXXXXXXXX GEGDAG+LSS    XXXXXXXXXXXX  KKAVRRGVTFAEDVVVVQ   XXXXX        XXXXXXXXX   AASPDR VGWSP
Sbjct:    1 MHSKAFYAIEQLKGIRDKAKSSNRRR-GDYRPLKAIVFSQFLPVLNIVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNRAK-ELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIMKDTMEQELRSYVNSDDKTRNAAPTATPGSRWGSLSPTNGSPNGHTAHSSSPLRGAGAAGGVDGRFPANGGVGGSTPTPPRKKPREKSPWEGRGRKRPRSGGSGKRVAGGGGLSASSRQEHAKVHFLLTSLRSSKAAAXXXXXXXXXXXXXXXXXXXXXXXXXXGEGDAGSLSSXXXXXXXXXXXXXXXXXXKKAVRRGVTFAEDVVVVQXXXXXXXXXXXXXXXXXXXXXXXXXXVSAASPDRIVGWSP 397          
BLAST of mRNA_Ecto-sp13_S_contig15669.4193.1 vs. uniprot
Match: A0A6H5JNK1_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNK1_9PHAE)

HSP 1 Score: 550 bits (1416), Expect = 4.610e-189
Identity = 338/393 (86.01%), Postives = 346/393 (88.04%), Query Frame = 1
Query:    1 MHSKAFYAIEQLKGIRDQTKSSNRRRRGDYRPLKAIVFSQFLPVLNIVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNRREGELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIMKDTMEQELRSYVNSDDKTRNAASTASPGSRWGSLSPTNGSLNGHTAHSSSPVRGAGAAGGVDGRFPANGGVGGSTSTPPRKKPREKSPWEGRGRKRPRSGGSGKRVAGGGGLSASSRQEHAKVHFLLTSLRSSKAAAAQGSXXXXXXXXXXXXXXXXXXXXXGEGDAGTLSSARQGXXXXXXXXXXXXKKAVRRGVTFAEDVVVVQDKAXXXXXEDPRCRGEXXXXXXXXXAASPDRFVGWSP 1179
            MHSKAFYAIEQLKGIRD+ KSSNRRR GDYRPLKAIVFSQFLPVLNIVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNR + ELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIMKDTMEQELRSYVNSD KTRNAA TA+PGSRWGSLSP++GS +GHTAH SSP+RGA AAGGVD RFPANGGVGGST TPPRKKPREKSPWEGRGRKRPRSGGSGKRV GGGGLSASSRQEHAKVHFLLTSLR SKAAAAQG      XXXXXXXXXXXXXXXX              XXXXXXXXXXXX KAVRRGVTFAEDVVVVQDKA     EDPR RGE    XXX  AASPDR +GWSP
Sbjct:  326 MHSKAFYAIEQLKGIRDKAKSSNRRR-GDYRPLKAIVFSQFLPVLNIVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNRAK-ELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIMKDTMEQELRSYVNSD-KTRNAAPTATPGSRWGSLSPSHGSPDGHTAHPSSPLRGARAAGGVDDRFPANGGVGGSTPTPPRKKPREKSPWEGRGRKRPRSGGSGKRVTGGGGLSASSRQEHAKVHFLLTSLRPSKAAAAQGGDGGEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAVRRGVTFAEDVVVVQDKAVAAV-EDPRWRGEAAAGXXXASAASPDRVIGWSP 714          
BLAST of mRNA_Ecto-sp13_S_contig15669.4193.1 vs. uniprot
Match: A0A835Z414_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z414_9STRA)

HSP 1 Score: 153 bits (387), Expect = 5.640e-37
Identity = 86/181 (47.51%), Postives = 118/181 (65.19%), Query Frame = 1
Query:    1 MHSKAFYAIEQLKG---------------IRDQTKSSNRRRRGDYRPLKAIVFSQFLPVLNIVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNRREGELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIMKDTMEQELRSYVNSDD 498
            MHSKA   I QL                 +R+Q + S  R   D RP+KAI+FSQF  VL++VGDK  R  G  PE GW  RG + VAEF+G  RR  EL +F+T  +CFVLLL   G+ GLDLSFVTH++L+++IW+++LE QV+ARA+R+GA G V V+QL M+ T+E+ L + ++ D+
Sbjct: 1044 MHSKAREVIRQLDAARATAQQVQHELAASVREQRRLSAAR---DTRPVKAIIFSQFRKVLDMVGDKMYRYYGRCPEAGWLERGSEQVAEFFGA-RRNDELTKFKTSADCFVLLLNMDGSTGLDLSFVTHIYLLEEIWNKALERQVIARAHRLGATGPVKVIQLAMRGTIEETLLNGMDGDN 1220          
BLAST of mRNA_Ecto-sp13_S_contig15669.4193.1 vs. uniprot
Match: B8CDY7_THAPS (Bromo domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CDY7_THAPS)

HSP 1 Score: 141 bits (355), Expect = 8.150e-33
Identity = 77/167 (46.11%), Postives = 104/167 (62.28%), Query Frame = 1
Query:    7 SKAFYAIEQLKGIRDQTK-----------SSNRRRRGDYRPLKAIVFSQFLPVLNIVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNRREGELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIMKDTMEQEL 474
            SKA Y I++L  +R+++            S +      +RPLKAIVFSQF P+    GD+ +RE GG            CVA+F     R  EL++FR DP+CF++LL K+G+HGLDLSF TH+F +D I+D+SLE QVVARA RMGA G V V QL  KD++E+ +
Sbjct: 1282 SKAKYTIDKLLQLRNESSRNVSELAVRMFSKSSTHSSSHRPLKAIVFSQFRPIYEYFGDRLIREFGGA-----------CVADFSFTKTRNEELKKFRLDPQCFIMLLSKQGSHGLDLSFCTHIFFLDTIYDKSLEQQVVARAYRMGATGPVYVEQLTAKDSIEEVM 1437          
BLAST of mRNA_Ecto-sp13_S_contig15669.4193.1 vs. uniprot
Match: A0A7S3L006_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L006_9STRA)

HSP 1 Score: 128 bits (321), Expect = 1.190e-31
Identity = 63/130 (48.46%), Postives = 88/130 (67.69%), Query Frame = 1
Query:  106 IVFSQFLPVLNIVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNRREGELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIMKDTMEQELRSYVNSD 495
            I+FSQF   LN+VGD+ L   G             CV+E+WG+ R + EL +F +DPECF +LLGK G+ GLDLSFVTH+F +++IWD+SL  Q VARA RMGA+G+V V  +I +DT+E+ +++    D
Sbjct:    1 IIFSQFRKALNLVGDRLLGRFGSA-----------CVSEYWGRYRTQ-ELHKFTSDPECFCMLLGKDGSEGLDLSFVTHIFFLEEIWDKSLAEQTVARAWRMGARGAVEVETIIAQDTVEETMKALEAGD 118          
BLAST of mRNA_Ecto-sp13_S_contig15669.4193.1 vs. uniprot
Match: A0A7S0C464_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C464_9STRA)

HSP 1 Score: 132 bits (333), Expect = 2.990e-30
Identity = 64/126 (50.79%), Postives = 89/126 (70.63%), Query Frame = 1
Query:   91 RPLKAIVFSQFLPVLNIVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNRREGELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIMKDTMEQ 468
            RP+K I+FSQF  +LN+VGD+ +R  G             C+AE+WG +R+  EL +F     CF +LLGK G+HGLDLSFVTH+F +++IWD+SL+ QV+ARA RMGA GSV V QL+ K+++E+
Sbjct:  428 RPVKVILFSQFRQILNVVGDRLIRRFGN-----------DCIAEYWGGHRKS-ELAKFILSENCFCMLLGKDGSHGLDLSFVTHIFFVEEIWDKSLKDQVIARAYRMGATGSVHVEQLVAKNSVEE 541          
BLAST of mRNA_Ecto-sp13_S_contig15669.4193.1 vs. uniprot
Match: A0A7S2UJZ7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UJZ7_9STRA)

HSP 1 Score: 131 bits (329), Expect = 1.010e-29
Identity = 65/148 (43.92%), Postives = 101/148 (68.24%), Query Frame = 1
Query:   91 RPLKAIVFSQFLPVLNIVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNRREGELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIMKDTMEQELRSYVNSDDKTRNAASTASPG 534
            R LK I+FSQF P+LN++GD+ +R+ G           +  ++E+WG  + + EL++F   P+CF++LL + G+HGLDLSFVTHMF M++IWD+SLE QVVAR+ RMG KG V + QL+ ++++E EL + +N  +  ++A   +  G
Sbjct:  428 RALKVIIFSQFRPILNLIGDRLIRKFG-----------DDNISEYWGYAKAK-ELDKFIYSPDCFIMLLSRDGSHGLDLSFVTHMFFMEEIWDKSLEQQVVARSYRMGTKGHVEIEQLVSRNSVE-ELMANMNDREGEQSAVKLSENG 562          
BLAST of mRNA_Ecto-sp13_S_contig15669.4193.1 vs. uniprot
Match: A0A448ZGK3_9STRA (RING-type domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZGK3_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.120e-29
Identity = 67/131 (51.15%), Postives = 90/131 (68.70%), Query Frame = 1
Query:   82 GDYRPLKAIVFSQFLPVLNIVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNRREGELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIMKDTMEQEL 474
            G  RP K IVFSQF  VLNI GD+ LR  G             C+AE+WGK R++ EL++F  D +C  +LLGK G+ GLDLSFVTH+  ++Q+WD+SLE QVVARA RMGA+GSV V  L+ ++++E+ +
Sbjct: 1368 GGRRPPKVIVFSQFRKVLNITGDRLLRRFGSG-----------CIAEYWGKYRKK-ELQKFVRDEKCLCMLLGKDGSEGLDLSFVTHIVFLEQVWDKSLENQVVARAWRMGARGSVEVETLVAENSIEETM 1486          
BLAST of mRNA_Ecto-sp13_S_contig15669.4193.1 vs. uniprot
Match: A0A1Z5KLC0_FISSO (Peptidyl-prolyl cis-trans isomerase A n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KLC0_FISSO)

HSP 1 Score: 129 bits (324), Expect = 9.000e-29
Identity = 74/165 (44.85%), Postives = 101/165 (61.21%), Query Frame = 1
Query:    7 SKAFYAIEQLKGIRDQTKSSNRRRRGDYRPLKAIVFSQFLPVLNIVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNRREGELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIMKDTMEQELRSYVNSDDK 501
            SK+ Y I ++  +   +K+         RPLK IVFSQF   LN+VGD+  R  G             CVAE+WG+ R+E EL +F    EC  LLL K G+ GLDLSFVTH+FL+++IWD++LE QVVARA RMGA G V V  L+ + ++E E+   V +D++
Sbjct: 1042 SKSHYLINKIAALHSNSKNQ--------RPLKVIVFSQFRKALNVVGDRLYRRFGSA-----------CVAEYWGRYRKE-ELSKFIHHSECVCLLLTKDGSEGLDLSFVTHIFLLEEIWDKALEDQVVARAWRMGAHGRVEVETLVAQHSVE-EIMMDVKADEQ 1185          
BLAST of mRNA_Ecto-sp13_S_contig15669.4193.1 vs. uniprot
Match: A0A1Z5KNI5_FISSO (Peptidyl-prolyl cis-trans isomerase A n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KNI5_FISSO)

HSP 1 Score: 128 bits (322), Expect = 1.640e-28
Identity = 72/167 (43.11%), Postives = 104/167 (62.28%), Query Frame = 1
Query:    7 SKAFYAIEQLKGIRDQTKSSNRRRRGDYRPLKAIVFSQFLPVLNIVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNRREGELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIMKDTMEQELRSYVNSDDKTR 507
            SK+ Y I ++  +   +K+         RPLK IVFSQF   LN+VGD+  R  G             CVAE+WG+ R+E EL +F    +C  LLL K G+ GLDLSFVTH+FL+++IWD++LE QVVARA RMGA+G V V  L+ + ++E+ +   +++DD+ +
Sbjct: 1039 SKSHYLINKIAALHSNSKNE--------RPLKVIVFSQFRKALNVVGDRLYRRFGSA-----------CVAEYWGRYRKE-ELSKFIHRNDCVCLLLTKDGSEGLDLSFVTHIFLLEEIWDKALEDQVVARAWRMGARGRVEVETLVAQHSVEEIM---MDADDEQK 1182          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15669.4193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP68_ECTSI4.870e-19690.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNK1_9PHAE4.610e-18986.01SNF2-rel_dom domain-containing protein n=1 Tax=Ect... [more]
A0A835Z414_9STRA5.640e-3747.51SNF2 family N-terminal domain-containing protein n... [more]
B8CDY7_THAPS8.150e-3346.11Bromo domain-containing protein n=1 Tax=Thalassios... [more]
A0A7S3L006_9STRA1.190e-3148.46Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S0C464_9STRA2.990e-3050.79Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2UJZ7_9STRA1.010e-2943.92Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A448ZGK3_9STRA1.120e-2951.15RING-type domain-containing protein n=1 Tax=Pseudo... [more]
A0A1Z5KLC0_FISSO9.000e-2944.85Peptidyl-prolyl cis-trans isomerase A n=1 Tax=Fist... [more]
A0A1Z5KNI5_FISSO1.640e-2843.11Peptidyl-prolyl cis-trans isomerase A n=1 Tax=Fist... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15669contigEcto-sp13_S_contig15669:463..3885 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score565.8
Seed ortholog evalue1.5e-158
Seed eggNOG ortholog2880.D7FP68
Model size1182
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.pyrimidine dimer repair by nucleotide-excision repair
EggNOG OGsCOG0141@1,KOG1002@2759
Cds size1182
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462829.4685342-CDS-Ecto-sp13_S_contig15669:462..5391681462829.4685342-CDS-Ecto-sp13_S_contig15669:462..539Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15669 463..539 +
1681462829.478259-CDS-Ecto-sp13_S_contig15669:760..8211681462829.478259-CDS-Ecto-sp13_S_contig15669:760..821Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15669 761..821 +
1681462829.4863632-CDS-Ecto-sp13_S_contig15669:1258..13691681462829.4863632-CDS-Ecto-sp13_S_contig15669:1258..1369Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15669 1259..1369 +
1681462829.4953482-CDS-Ecto-sp13_S_contig15669:2650..27881681462829.4953482-CDS-Ecto-sp13_S_contig15669:2650..2788Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15669 2651..2788 +
1681462829.5058815-CDS-Ecto-sp13_S_contig15669:3090..38851681462829.5058815-CDS-Ecto-sp13_S_contig15669:3090..3885Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15669 3091..3885 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15669.4193.1prot_Ecto-sp13_S_contig15669.4193.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15669 463..3885 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15669.4193.1

>prot_Ecto-sp13_S_contig15669.4193.1 ID=prot_Ecto-sp13_S_contig15669.4193.1|Name=mRNA_Ecto-sp13_S_contig15669.4193.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=394bp
MHSKAFYAIEQLKGIRDQTKSSNRRRRGDYRPLKAIVFSQFLPVLNIVGD
KFLRELGGFPEEGWQRRGEKCVAEFWGKNRREGELERFRTDPECFVLLLG
KRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIM
KDTMEQELRSYVNSDDKTRNAASTASPGSRWGSLSPTNGSLNGHTAHSSS
PVRGAGAAGGVDGRFPANGGVGGSTSTPPRKKPREKSPWEGRGRKRPRSG
GSGKRVAGGGGLSASSRQEHAKVHFLLTSLRSSKAAAAQGSDGGGKDKEK
QRGGEEEEEEEDGEGDAGTLSSARQGNGKGKGKGKGKGKKAVRRGVTFAE
DVVVVQDKAAAAAVEDPRCRGEAAAGGGGASAASPDRFVGWSP*
back to top

mRNA from alignment at Ecto-sp13_S_contig15669:463..3885+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15669.4193.1 ID=mRNA_Ecto-sp13_S_contig15669.4193.1|Name=mRNA_Ecto-sp13_S_contig15669.4193.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3423bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15669:463..3885+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACAGCAAAGCGTTCTACGCAATTGAGCAGCTGAAGGGTATTCGGGA CCAGACCAAGTCGTCGAACAGGCGACGGTACGCAGGAGAGGAACACTCAG GAGCACGCATCTTATTCTTAGGATGATAATTTTTTTCTATCGCCGCATGT GCCGCCTGTAAGCGGGCCTTCTTTACTCGTACCACGCCTGCTTTCTTGGG AGAAAACACGCCTGGTTGCTGTTTCAATGGATAGGCATCGACCACGACAG ACACATCTATGACTGCCGATTCATGACAAGTGTTTTTTCATTCGCGAGCA GGGGAGACTATCGTCCGTTGAAGGCCATCGTGTTCTCGCAGTTTCTTCCG GTTCTCAATGTGAGTCCGGCCGAGTTATTTGGCGTTGACACGTTGCATTA GAGAGGAAACAAGTGTCGCGAGAGATCGACCGAACGATACGCACAGGTTT GAAAGAAGTTCGTTGGTGAAATTGATCCAAAAAATAAGGTGCTGTGCACG TACGCCCATCGCACACAACAACAATGAAGCCCACAGCGGGCGGGGCTGGG ATCCTGATCCGCCTTCAACTACTTCAGAGGAAGTGGTCGGTCGAACCTAT ATCTATCGCACTTGCGTGCAGCTCTGGGATCTGTGTGCTCCCCCTATCCA CCAGGATGTAGTCCGTGCCTGACAACGACGCCAAATATCCACATATGTAT CCAACGAGAAATGGCAATACCCGTGTAGCGCGCTCACACACTGGTTGCTT AATTTCGGCACTAAGCTGTTATATCGTAATCCGCACCTGCCTGCAGATCG TGGGAGACAAGTTTCTCCGAGAGTTGGGCGGTTTTCCCGAAGAAGGCTGG CAGAGAAGAGGAGAGAAATGCGTCGCTGAGTTCTGGGGCAAGAACAGGCG AGAGGGTGTTTGTTGGTGTTATCCTTATCCTTGGCAACCACCAAGTATTT TTTTCCCATGCAAGCTAGCTTAATACGAGTATTGCAGGCGCGCGCATGCA GCGATAAGAAATCCTTTACCAAAGGTAAAAAAGCTTCGCGAGCGAGTACC GAGGATGACACAAGATACCGCACCCCCTGGATCGAGTTTGAAGGCTCGAT TACTCCACGACGAAGAGGATGAATGAATGAAACGATACGTTTTCGGAAAG TCTCTCGATTAGAGAGGTTCAACGGCACCCTTGTCGGCGCTGCCACTCTT TCTGCTGTGGAGAAATCGAGATTGGAAATCGGTCCATGGGATGTGACATC TGCTGTCACCTACTTGCACGGTATTGTGGTACCGAGCAAGCCTGCAAGAC GAATGAACTCAAGCCCTTTAGTCGTCTTTGGTAAAGCGTCTTTGGGCTCT AGGTAGTAAATGTGCCATGTGGACCGGAGAGTTACATATGCCCTTAACGG ATCCCCCACGCGCGGCCTCCCCAGGTTGTAGTGGGAAGGCCGAGCCACCA ACCCCGCTTAGAGATACGTAAAAAGTATTGAGCGTTGAGGAGTCAACAGA GGCCCTTCAGATGGAAGGGGTAACCATGATCATCTCGAGCTCCTTGATTC CGCCTATAGGGGGTATGGTCCGGTCGCTTGCACCGTATCGGATGCAAGAA AACGTGTTGTCTCTGTACGTCTTTTGTGTGGGCACAAAGACGTACCTAGC GCGCCACCTGCCTAGGAACTTGATGATACCTTCTCGGAAATTGAGGGTTC AAATTCTACGATATACAAAAACTTGTACCCTATCCACACTTGAATCCATG TTCGCGGTTGATTGGTTTCCCCAGTTTTCAAACGAGGAACGAGGCTTGCT CAAAATTGTTTTTGTAGAGTTTCTCAAGCGGTGGCACGTGCGGTGCTGCT GTCAACTGAAGTTTATTTTTGAGACGTCCACGCCCGAAGACTGGAATTTT TTTGGAAAGTAGTGGCAGGCTCAATGGAAGCATAGCTCTGTTTTATTTGT TCTTGAACGTTCTTCGTTGGAAGGGCGACTGGAGTGGCTTTTTTATTTTC CTGGATTAGTCTTTCTTGGGACCTGAAAAAGTACACATGGTGCTTCTGTC GGTAAAATACACCAAAACGAATATGTATTGATGCGCGATGGAATCGCACG CATCATGTTGTATGATCCATGTACTGATCCTTCGCGATTGTTTCCCTTCG TCTCTTTGCCTCCCTTTTCGTGTAAAACCAGGGCCAAGGAACTCGAGAGG TTCCGCACCGACCCCGAGTGCTTCGTGTTGCTGCTGGGTAAAAGGGGGGC CCACGGCCTTGACCTCAGCTTCGTGACGCACATGTTCTTGATGGACCAGA TCTGGGACCGTTCTTTGGAAACACAGGTGAGGAGGAAAGGGGCCCACTGA CGGTACAGTCGGTTACGGGTGGGTGTGCACGTGTCGGGAGAGCGCACGCC CTGTTTCTTTTATTTATTTTTTCTTTGCCATCCCGTTTTTGCACCCCCTT CATATGTTTTTTTCCAGTGTCATCCCATTTTTTTGGACGTCAGTCTTCAC ACCGTTGCATGCACGTTTAGTTGTGGCCCAGCGTGTGTGCTTCGGCCGGA TAAAGTAACATCGGCCTTTGACGGCTTCTTCGCCATCGCCCTTGTCCCCG TTGCTGCTCACCACATTCGTATTCCAAGGTTGTTGCTCGTGCTAACCGCA TGGGTGCTAAAGGCTCGGTGTCGGTGGTGCAGCTCATCATGAAGGACACG ATGGAGCAAGAGCTCCGTTCCTACGTCAACAGCGACGACAAGACTCGGAA CGCCGCCTCCACCGCTTCCCCGGGGTCTCGCTGGGGTTCGCTTTCTCCGA CAAACGGTAGCCTCAACGGTCACACCGCTCATTCTTCTTCCCCTGTGCGT GGGGCGGGTGCCGCGGGCGGCGTTGATGGCCGTTTTCCAGCCAATGGAGG GGTGGGCGGATCAACCTCTACCCCTCCGAGAAAAAAGCCTCGTGAAAAGA GCCCGTGGGAGGGGAGAGGAAGGAAACGTCCCCGGTCCGGCGGCAGCGGC AAGAGGGTTGCCGGCGGTGGCGGGTTGTCGGCGTCGTCACGTCAAGAGCA CGCCAAGGTGCACTTCTTGTTGACAAGCTTGAGGTCGTCGAAGGCGGCCG CTGCTCAGGGGAGTGACGGTGGTGGGAAGGACAAGGAGAAGCAAAGGGGC GGCGAGGAGGAAGAGGAAGAGGAGGACGGCGAGGGAGACGCGGGTACGTT ATCATCGGCACGCCAAGGGAACGGTAAGGGGAAAGGTAAGGGCAAGGGCA AGGGCAAAAAGGCCGTCAGGAGAGGGGTAACTTTCGCCGAAGACGTCGTG GTTGTCCAAGACAAGGCTGCTGCCGCTGCCGTGGAGGACCCGCGGTGCCG GGGAGAGGCGGCGGCAGGAGGCGGAGGAGCGAGCGCCGCAAGCCCCGACC GCTTCGTCGGCTGGTCTCCCTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15669:463..3885+

>mRNA_Ecto-sp13_S_contig15669.4193.1 ID=mRNA_Ecto-sp13_S_contig15669.4193.1|Name=mRNA_Ecto-sp13_S_contig15669.4193.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1182bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15669:463..3885+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACAGCAAAGCGTTCTACGCAATTGAGCAGCTGAAGGGTATTCGGGA
CCAGACCAAGTCGTCGAACAGGCGACGCAGGGGAGACTATCGTCCGTTGA
AGGCCATCGTGTTCTCGCAGTTTCTTCCGGTTCTCAATATCGTGGGAGAC
AAGTTTCTCCGAGAGTTGGGCGGTTTTCCCGAAGAAGGCTGGCAGAGAAG
AGGAGAGAAATGCGTCGCTGAGTTCTGGGGCAAGAACAGGCGAGAGGGTG
AACTCGAGAGGTTCCGCACCGACCCCGAGTGCTTCGTGTTGCTGCTGGGT
AAAAGGGGGGCCCACGGCCTTGACCTCAGCTTCGTGACGCACATGTTCTT
GATGGACCAGATCTGGGACCGTTCTTTGGAAACACAGGTTGTTGCTCGTG
CTAACCGCATGGGTGCTAAAGGCTCGGTGTCGGTGGTGCAGCTCATCATG
AAGGACACGATGGAGCAAGAGCTCCGTTCCTACGTCAACAGCGACGACAA
GACTCGGAACGCCGCCTCCACCGCTTCCCCGGGGTCTCGCTGGGGTTCGC
TTTCTCCGACAAACGGTAGCCTCAACGGTCACACCGCTCATTCTTCTTCC
CCTGTGCGTGGGGCGGGTGCCGCGGGCGGCGTTGATGGCCGTTTTCCAGC
CAATGGAGGGGTGGGCGGATCAACCTCTACCCCTCCGAGAAAAAAGCCTC
GTGAAAAGAGCCCGTGGGAGGGGAGAGGAAGGAAACGTCCCCGGTCCGGC
GGCAGCGGCAAGAGGGTTGCCGGCGGTGGCGGGTTGTCGGCGTCGTCACG
TCAAGAGCACGCCAAGGTGCACTTCTTGTTGACAAGCTTGAGGTCGTCGA
AGGCGGCCGCTGCTCAGGGGAGTGACGGTGGTGGGAAGGACAAGGAGAAG
CAAAGGGGCGGCGAGGAGGAAGAGGAAGAGGAGGACGGCGAGGGAGACGC
GGGTACGTTATCATCGGCACGCCAAGGGAACGGTAAGGGGAAAGGTAAGG
GCAAGGGCAAGGGCAAAAAGGCCGTCAGGAGAGGGGTAACTTTCGCCGAA
GACGTCGTGGTTGTCCAAGACAAGGCTGCTGCCGCTGCCGTGGAGGACCC
GCGGTGCCGGGGAGAGGCGGCGGCAGGAGGCGGAGGAGCGAGCGCCGCAA
GCCCCGACCGCTTCGTCGGCTGGTCTCCCTAG
back to top