prot_Ecto-sp13_S_contig15634.4180.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig15634.4180.1
Unique Nameprot_Ecto-sp13_S_contig15634.4180.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length310
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15634.4180.1 vs. uniprot
Match: D8LIN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIN3_ECTSI)

HSP 1 Score: 363 bits (932), Expect = 1.270e-122
Identity = 255/313 (81.47%), Postives = 261/313 (83.39%), Query Frame = 0 
Query:    1 GGKSPKHASSPRSSGTKGAALALETNESEIVLDRLGKEIVTLLQAGGSKKDAVRRRLRMGINEVTKFLESKAAXXXXXXXXXXXXXRGGSINRQGIPKASGKCESAQAGXXXXXXX--SLVATAPPHTPPAIVLICRDVRPARLVEHVHALVALTATPYLVLSEPSSSLGGVFGCKTMAALAICPARNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR--GTRAATREGEGEEKNVEGREGCSGGGEXXXXXXXXXXXXXXXXXXXXXGQGRRGGGGEGTVSDDRVAVDEDVDSFVDFLRRKVRAPSS 309
            GGKSPKHASSP SSGTKGAALALETNES+IVLDRLGKEIVTLLQAGGSKKDA RRRLRMGINEVTKFLESKAA             RG SINRQGI KASGKC+SAQAG         SLVA APPHTPPAIVLICRDVRPARLVEHVHALV LTATP+LVLSEPSSSLGGVFGCKTMAALAICPAR P           XXXXXXXXXXXXXXXXXXXXXXR  G  AAT EGEGEEK+VEGREGCSGGG XXXXXXXXXXXXX  XXXXXX +GRR GGGE TVSDDRVAVDEDVDSFV+FLRRKVR PSS
Sbjct:   18 GGKSPKHASSPGSSGTKGAALALETNESKIVLDRLGKEIVTLLQAGGSKKDAARRRLRMGINEVTKFLESKAAAAAAPPKTPSSASRGSSINRQGISKASGKCDSAQAGAGAEVGARASLVAPAPPHTPPAIVLICRDVRPARLVEHVHALVVLTATPFLVLSEPSSSLGGVFGCKTMAALAICPARTPRPAQTSSISPPXXXXXXXXXXXXXXXXXXXXXXRARGATAATGEGEGEEKDVEGREGCSGGGXXXXXXXXXXXXXXRGXXXXXXXEGRRDGGGEVTVSDDRVAVDEDVDSFVEFLRRKVRTPSS 330
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BLAST of mRNA_Ecto-sp13_S_contig15634.4180.1 vs. uniprot
Match: W7TQK6_9STRA (Ribosomal protein L7Ae/L8/Nhp2 family n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQK6_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.200e-5
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 0 
Query:  129 AIVLICRDVRPARLVEHVHALVALTATPYLVLSEPSSSLGGVFGCKTMAAL 179
            +++LICRDVRPARLVEHV  L A+   P+ +L + +S+LG   G K +AAL
Sbjct:  198 SLILICRDVRPARLVEHVAVLAAVRDVPFFLLPKATSALGQALGLKCIAAL 248
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15634.4180.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIN3_ECTSI1.270e-12281.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7TQK6_9STRA1.200e-552.94Ribosomal protein L7Ae/L8/Nhp2 family n=1 Tax=Nann... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR02906450S ribosomal protein L30e-likeSUPERFAMILY55315L30e-likecoord: 129..181

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15634contigEcto-sp13_S_contig15634:486..2323 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15634.4180.1mRNA_Ecto-sp13_S_contig15634.4180.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig15634 486..2323 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig15634.4180.1 ID=prot_Ecto-sp13_S_contig15634.4180.1|Name=mRNA_Ecto-sp13_S_contig15634.4180.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=310bp
GGKSPKHASSPRSSGTKGAALALETNESEIVLDRLGKEIVTLLQAGGSKK
DAVRRRLRMGINEVTKFLESKAAAAAAPPKTPSSSSRGGSINRQGIPKAS
GKCESAQAGAGAGAGASLVATAPPHTPPAIVLICRDVRPARLVEHVHALV
ALTATPYLVLSEPSSSLGGVFGCKTMAALAICPARNPPPPQTSSISPPPS
SSTGTPGQERGEEEEHKPPPRGTRAATREGEGEEKNVEGREGCSGGGEEE
GEGREDCSGGGGEEEEGREGQGRRGGGGEGTVSDDRVAVDEDVDSFVDFL
RRKVRAPSS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029064L30e-like