mRNA_Ecto-sp13_S_contig15634.4180.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15634.4180.1
Unique NamemRNA_Ecto-sp13_S_contig15634.4180.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15634.4180.1 vs. uniprot
Match: D8LIN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIN3_ECTSI)

HSP 1 Score: 363 bits (932), Expect = 1.270e-122
Identity = 255/313 (81.47%), Postives = 261/313 (83.39%), Query Frame = 1 
Query:    1 GGKSPKHASSPRSSGTKGAALALETNESEIVLDRLGKEIVTLLQAGGSKKDAVRRRLRMGINEVTKFLESKAAXXXXXXXXXXXXXRGGSINRQGIPKASGKCESAQAGXXXXXXX--SLVATAPPHTPPAIVLICRDVRPARLVEHVHALVALTATPYLVLSEPSSSLGGVFGCKTMAALAICPARNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR--GTRAATREGEGEEKNVEGREGCSGGGEXXXXXXXXXXXXXXXXXXXXXGQGRRGGGGEGTVSDDRVAVDEDVDSFVDFLRRKVRAPSS 927
            GGKSPKHASSP SSGTKGAALALETNES+IVLDRLGKEIVTLLQAGGSKKDA RRRLRMGINEVTKFLESKAA             RG SINRQGI KASGKC+SAQAG         SLVA APPHTPPAIVLICRDVRPARLVEHVHALV LTATP+LVLSEPSSSLGGVFGCKTMAALAICPAR P           XXXXXXXXXXXXXXXXXXXXXXR  G  AAT EGEGEEK+VEGREGCSGGG XXXXXXXXXXXXX  XXXXXX +GRR GGGE TVSDDRVAVDEDVDSFV+FLRRKVR PSS
Sbjct:   18 GGKSPKHASSPGSSGTKGAALALETNESKIVLDRLGKEIVTLLQAGGSKKDAARRRLRMGINEVTKFLESKAAAAAAPPKTPSSASRGSSINRQGISKASGKCDSAQAGAGAEVGARASLVAPAPPHTPPAIVLICRDVRPARLVEHVHALVVLTATPFLVLSEPSSSLGGVFGCKTMAALAICPARTPRPAQTSSISPPXXXXXXXXXXXXXXXXXXXXXXRARGATAATGEGEGEEKDVEGREGCSGGGXXXXXXXXXXXXXXRGXXXXXXXEGRRDGGGEVTVSDDRVAVDEDVDSFVEFLRRKVRTPSS 330
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BLAST of mRNA_Ecto-sp13_S_contig15634.4180.1 vs. uniprot
Match: W7TQK6_9STRA (Ribosomal protein L7Ae/L8/Nhp2 family n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQK6_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.200e-5
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:  385 AIVLICRDVRPARLVEHVHALVALTATPYLVLSEPSSSLGGVFGCKTMAAL 537
            +++LICRDVRPARLVEHV  L A+   P+ +L + +S+LG   G K +AAL
Sbjct:  198 SLILICRDVRPARLVEHVAVLAAVRDVPFFLLPKATSALGQALGLKCIAAL 248
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15634.4180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIN3_ECTSI1.270e-12281.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7TQK6_9STRA1.200e-552.94Ribosomal protein L7Ae/L8/Nhp2 family n=1 Tax=Nann... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15634contigEcto-sp13_S_contig15634:486..2323 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size930
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog description50S ribosomal protein L30e-like
Ec32 orthologEc-11_004520.1
Cds size930
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462828.4081419-CDS-Ecto-sp13_S_contig15634:485..9551681462828.4081419-CDS-Ecto-sp13_S_contig15634:485..955Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15634 486..955 -
1681462828.421319-CDS-Ecto-sp13_S_contig15634:1444..17681681462828.421319-CDS-Ecto-sp13_S_contig15634:1444..1768Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15634 1445..1768 -
1681462828.4326248-CDS-Ecto-sp13_S_contig15634:2187..23231681462828.4326248-CDS-Ecto-sp13_S_contig15634:2187..2323Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15634 2188..2323 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15634.4180.1prot_Ecto-sp13_S_contig15634.4180.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15634 486..2323 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15634.4180.1

>prot_Ecto-sp13_S_contig15634.4180.1 ID=prot_Ecto-sp13_S_contig15634.4180.1|Name=mRNA_Ecto-sp13_S_contig15634.4180.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=310bp
GGKSPKHASSPRSSGTKGAALALETNESEIVLDRLGKEIVTLLQAGGSKK
DAVRRRLRMGINEVTKFLESKAAAAAAPPKTPSSSSRGGSINRQGIPKAS
GKCESAQAGAGAGAGASLVATAPPHTPPAIVLICRDVRPARLVEHVHALV
ALTATPYLVLSEPSSSLGGVFGCKTMAALAICPARNPPPPQTSSISPPPS
SSTGTPGQERGEEEEHKPPPRGTRAATREGEGEEKNVEGREGCSGGGEEE
GEGREDCSGGGGEEEEGREGQGRRGGGGEGTVSDDRVAVDEDVDSFVDFL
RRKVRAPSS*
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mRNA from alignment at Ecto-sp13_S_contig15634:486..2323-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15634.4180.1 ID=mRNA_Ecto-sp13_S_contig15634.4180.1|Name=mRNA_Ecto-sp13_S_contig15634.4180.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1838bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15634:486..2323- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGGCAAGTCGCCTAAGCACGCCTCTTCACCACGGTCTTCGGGGACAAA
GGGCGCCGCCCTCGCCTTGGAGACAAACGAGAGCGAGATCGTTCTAGACA
GGCTGGGGAAGGAGATAGTCACCCTGCTCCAAGCAGGTACCCGTCGTTGA
TGCTTCTTATTGTGGGCTAGGCCGCATTAGAACAGGAGTTTGACGGATAG
GGATATTTCGGGGATGAGACCACCGGGCTTGATACCCGTATACAACCCTC
CTACTGTTTCTACCATACATTAGTACCGCTTTAGCACAAGGGTGGACAAC
CGTAGCTCGAGGTGCGTCATAATGACCAGGTGCGGCTGGGACGATGCTCG
TGTGCGCGTCGAGTTGGTGTCGTACCTCTGTTCCCAGTTAACCGAAAGCT
GGAGACTTAAGTAAGGGCCAAGCAGCAAAAGAAGACATACGCATACAAAG
AAACCGTGGAGGCTGCTGTCTTGACTTGAGCAGATAACCTAATCTACCCC
AACCGAGTCTTTCATCATCGACCCCCCCCCCCCCCCATCTTGCCCCTCCT
GACAGGGGGCTCCAAGAAAGACGCGGTCAGGCGGCGTCTCAGGATGGGCA
TCAACGAGGTCACCAAATTCCTGGAGTCCAAAGCCGCCGCCGCCGCTGCT
CCTCCGAAGACTCCCTCCTCTAGCTCACGCGGAGGCTCGATCAACCGGCA
AGGCATCCCGAAAGCGTCCGGGAAGTGCGAGAGCGCGCAGGCCGGGGCGG
GGGCAGGGGCAGGGGCAAGTCTTGTCGCAACCGCGCCTCCTCACACCCCA
CCTGCGATCGTGCTCATCTGCAGGGATGTGAGGCCCGCGAGGCTGGTGGA
GCACGTCCACGCCTTGGTTGCTCTAACCGGTGAGCCTGTTGCTCACTTGT
ACTTTTGGTTCTTGGTCTAAACGTTTGTCTAGTTTTTTCTCTGCGATGAT
GCACAGGAAAGAGAACTCACGTCCGCTCGGAATAGAGGTCCCAAGAAGGC
ACCGTGGTCGGTAGCCCACGGTTTTGATCACCTTTGTTCTTTTTAAACCA
TGCAGCTGTCTCCTGCGCACGCGCGCACAAGGTTGCGTTGGTTTGTATCC
GCCTTGTGCCCAGGTCTGTCTTGTCTCTCTCTCTACCTCGCTCTCTCTTG
CGGCAGAAACGCCTCGCCCGTTGCCGCTCGTTTGCGGTGCATCTCCAAAG
GGCGTTTGTTTTTCAACAGGGCACACAACACGCGTATGCACGACGCACAA
CTTCTCTTGATGCTCTTCTCCCGCCGGCGACCGTTTTCGTGTCCCGTCGT
TCGCCCTCTCTCTCGCGCCTGTGTGCTCTCTCGCTCCTGATCTTTCGACC
TGACCGATTACCATCCAGCGACTCCTTACCTAGTTTTATCGGAGCCAAGC
AGCAGCCTCGGGGGGGTGTTCGGCTGCAAGACCATGGCAGCTCTAGCCAT
CTGCCCCGCCCGAAACCCTCCGCCGCCGCAGACTTCATCTATTTCGCCGC
CGCCTAGCTCTTCCACGGGAACCCCCGGGCAGGAGAGGGGCGAAGAAGAA
GAACACAAGCCCCCCCCAAGAGGAACTAGAGCGGCGACGCGCGAGGGAGA
GGGAGAGGAGAAAAATGTGGAGGGGAGAGAGGGCTGTAGTGGGGGAGGGG
AAGAAGAGGGAGAGGGGAGGGAGGACTGCAGTGGGGGGGGGGGAGAGGAG
GAAGAGGGGAGGGAGGGACAAGGGCGGCGGGGCGGGGGGGGAGAGGGAAC
AGTGTCGGACGACCGGGTCGCTGTGGACGAGGACGTGGACTCCTTCGTTG
ACTTTCTCAGAAGAAAAGTTCGAGCCCCATCTTCGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15634:486..2323-

>mRNA_Ecto-sp13_S_contig15634.4180.1 ID=mRNA_Ecto-sp13_S_contig15634.4180.1|Name=mRNA_Ecto-sp13_S_contig15634.4180.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=930bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15634:486..2323- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGGCAAGTCGCCTAAGCACGCCTCTTCACCACGGTCTTCGGGGACAAA
GGGCGCCGCCCTCGCCTTGGAGACAAACGAGAGCGAGATCGTTCTAGACA
GGCTGGGGAAGGAGATAGTCACCCTGCTCCAAGCAGGGGGCTCCAAGAAA
GACGCGGTCAGGCGGCGTCTCAGGATGGGCATCAACGAGGTCACCAAATT
CCTGGAGTCCAAAGCCGCCGCCGCCGCTGCTCCTCCGAAGACTCCCTCCT
CTAGCTCACGCGGAGGCTCGATCAACCGGCAAGGCATCCCGAAAGCGTCC
GGGAAGTGCGAGAGCGCGCAGGCCGGGGCGGGGGCAGGGGCAGGGGCAAG
TCTTGTCGCAACCGCGCCTCCTCACACCCCACCTGCGATCGTGCTCATCT
GCAGGGATGTGAGGCCCGCGAGGCTGGTGGAGCACGTCCACGCCTTGGTT
GCTCTAACCGCGACTCCTTACCTAGTTTTATCGGAGCCAAGCAGCAGCCT
CGGGGGGGTGTTCGGCTGCAAGACCATGGCAGCTCTAGCCATCTGCCCCG
CCCGAAACCCTCCGCCGCCGCAGACTTCATCTATTTCGCCGCCGCCTAGC
TCTTCCACGGGAACCCCCGGGCAGGAGAGGGGCGAAGAAGAAGAACACAA
GCCCCCCCCAAGAGGAACTAGAGCGGCGACGCGCGAGGGAGAGGGAGAGG
AGAAAAATGTGGAGGGGAGAGAGGGCTGTAGTGGGGGAGGGGAAGAAGAG
GGAGAGGGGAGGGAGGACTGCAGTGGGGGGGGGGGAGAGGAGGAAGAGGG
GAGGGAGGGACAAGGGCGGCGGGGCGGGGGGGGAGAGGGAACAGTGTCGG
ACGACCGGGTCGCTGTGGACGAGGACGTGGACTCCTTCGTTGACTTTCTC
AGAAGAAAAGTTCGAGCCCCATCTTCGTAG
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