mRNA_Ecto-sp13_S_contig15623.4174.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15623.4174.1
Unique NamemRNA_Ecto-sp13_S_contig15623.4174.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15623.4174.1 vs. uniprot
Match: A0A6H5L6Z7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Z7_9PHAE)

HSP 1 Score: 439 bits (1128), Expect = 4.890e-142
Identity = 239/255 (93.73%), Postives = 244/255 (95.69%), Query Frame = 1 
Query:    1 SLNVGMQRPGLASVPTLLLALGLALAATPTAGDLRAGWGGLRASLAANMLLAVRAIAAKMALDDYGLDEVSALFSGAKMTAGLQCLILLVVEVPRAAGGLSPRLLPHLWGVGVMEIEHQQPEGPVVSGEGAGIGVGDAGDWGEGRERARLACLLLVNGVFLYGHLLVLFALLSRLSATMFVISSGYVRAALVFVLLLALRGSTAGPRIVGMSLATLAVSAHFYRAYVRGRATSSLLNSADNADGPPRDADDGGEA 765
            SLNVGMQRPGLASVPTLLLALGLALAATPTAGDLRAGWGGLRASLAAN+LLAVRAIAAKMALDDYGLDE+SALFSGA MTAGLQ LILLVVEVPRAA GLSPRLLPHLWGVGVMEI+ QQP GPV+SGEGAGIGVGDAGDWGEGRERARLACLLL NGVFLYGHLLVLFALLSRLSATMF ISSGYV AALVFVLLLALRGS AGPR+VGMSLATLAVSAHFYRAYVRGRATSSLLNSADNADG P DADDGGEA
Sbjct:  436 SLNVGMQRPGLASVPTLLLALGLALAATPTAGDLRAGWGGLRASLAANILLAVRAIAAKMALDDYGLDEISALFSGATMTAGLQSLILLVVEVPRAAAGLSPRLLPHLWGVGVMEIDRQQPGGPVLSGEGAGIGVGDAGDWGEGRERARLACLLLANGVFLYGHLLVLFALLSRLSATMFAISSGYVHAALVFVLLLALRGSAAGPRMVGMSLATLAVSAHFYRAYVRGRATSSLLNSADNADGLPCDADDGGEA 690
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BLAST of mRNA_Ecto-sp13_S_contig15623.4174.1 vs. uniprot
Match: D7G6G9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6G9_ECTSI)

HSP 1 Score: 412 bits (1059), Expect = 3.290e-134
Identity = 226/255 (88.63%), Postives = 230/255 (90.20%), Query Frame = 1 
Query:    1 SLNVGMQRPGLASVPTLLLALGLALAATPTAGDLRAGWGGLRASLAANMLLAVRAIAAKMALDDYGLDEVSALFSGAKMTAGLQCLILLVVEVPRAAGGLSPRLLPHLWGVGVMEIEHQQPEGPVVSGEGAGIGVGDAGDWGEGRERARLACLLLVNGVFLYGHLLVLFALLSRLSATMFVISSGYVRAALVFVLLLALRGSTAGPRIVGMSLATLAVSAHFYRAYVRGRATSSLLNSADNADGPPRDADDGGEA 765
            SLNVGMQRPGLASVPTLLLALGLALAATPTAGDLRAGWGGLRASLAANMLLAVRAIAAKMALDDYGLDE+SALFSGAKMTAGLQCLILLVVEVPRAA GLSPRLLPHLWGVGVMEI+ QQP GPVVSGEGAGIGVG+AGDWGEGRERARLACLLL NGVFLYGHLLVLFALLSRLSATMF IS                RGS AGPRIVGMSLATLAVSAHFYRAYVRGRATSSLLNS DNA+G P DADDGGEA
Sbjct:  466 SLNVGMQRPGLASVPTLLLALGLALAATPTAGDLRAGWGGLRASLAANMLLAVRAIAAKMALDDYGLDEISALFSGAKMTAGLQCLILLVVEVPRAAAGLSPRLLPHLWGVGVMEIDQQQPGGPVVSGEGAGIGVGEAGDWGEGRERARLACLLLANGVFLYGHLLVLFALLSRLSATMFAIS----------------RGSAAGPRIVGMSLATLAVSAHFYRAYVRGRATSSLLNSGDNAEGLPCDADDGGEA 704
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15623.4174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6Z7_9PHAE4.890e-14293.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6G9_ECTSI3.290e-13488.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15623contigEcto-sp13_S_contig15623:3..3120 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size915
Hectar predicted targeting categorysignal peptide
Exons5
Cds size900
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15623.4174.1prot_Ecto-sp13_S_contig15623.4174.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15623 3..3105 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462827.973322-CDS-Ecto-sp13_S_contig15623:2..2281681462827.973322-CDS-Ecto-sp13_S_contig15623:2..228Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15623 3..228 -
1681462827.9841383-CDS-Ecto-sp13_S_contig15623:762..9001681462827.9841383-CDS-Ecto-sp13_S_contig15623:762..900Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15623 763..900 -
1681462827.9944236-CDS-Ecto-sp13_S_contig15623:1864..21631681462827.9944236-CDS-Ecto-sp13_S_contig15623:1864..2163Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15623 1865..2163 -
1681462828.0042434-CDS-Ecto-sp13_S_contig15623:2548..26231681462828.0042434-CDS-Ecto-sp13_S_contig15623:2548..2623Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15623 2549..2623 -
1681462828.0175626-CDS-Ecto-sp13_S_contig15623:2943..31051681462828.0175626-CDS-Ecto-sp13_S_contig15623:2943..3105Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15623 2944..3105 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462828.0300078-UTR-Ecto-sp13_S_contig15623:3105..31201681462828.0300078-UTR-Ecto-sp13_S_contig15623:3105..3120Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15623 3106..3120 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15623.4174.1

>prot_Ecto-sp13_S_contig15623.4174.1 ID=prot_Ecto-sp13_S_contig15623.4174.1|Name=mRNA_Ecto-sp13_S_contig15623.4174.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=300bp
MQRPGLASVPTLLLALGLALAATPTAGDLRAGWGGLRASLAANMLLAVRA
IAAKMALDDYGLDEVSALFSGAKMTAGLQCLILLVVEVPRAAGGLSPRLL
PHLWGVGVMEIEHQQPEGPVVSGEGAGIGVGDAGDWGEGRERARLACLLL
VNGVFLYGHLLVLFALLSRLSATMFVISSGYVRAALVFVLLLALRGSTAG
PRIVGMSLATLAVSAHFYRAYVRGRATSSLLNSADNADGPPRDADDGGEA
GGDATVAAGGGQEPISFAPPSPPPHRRRLPRLLRRDNDTSPAAAAPLSNS
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mRNA from alignment at Ecto-sp13_S_contig15623:3..3120-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15623.4174.1 ID=mRNA_Ecto-sp13_S_contig15623.4174.1|Name=mRNA_Ecto-sp13_S_contig15623.4174.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3118bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15623:3..3120- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCCTAAACGTGGGCATGCAGCGGCCGGGATTGGCATCGGTGCCCACCCT
GCTGCTAGCTCTTGGCCTCGCGCTAGCGGCTACCCCGACAGCGGGGGACC
TTAGGGCCGGGTGGGGGGGGCTCCGCGCGAGCCTGGCGGCCAACATGCTC
CTCGCCGTTCGCGCCATCGCAGCAAAGGTACCCCTCTTTTCTTCTGCTAC
ATACGACAAGATGACTAGATTCTTCTACAGGATGCACCACGAATTAAGAA
GGTTAACTTGCCTCGCTGTGCCCCAGGCTCGTTCTGATTTCGCCCGTTGG
GTAAAACAACATCGGTCATCAATGTTAGGTTGTGATCTGCGTGAGCATTA
TGGAAGATTGATCCCTCGCGTCGCCCCACTTGGGTTTGTTTCTCGCGCTT
GGTCCCCCCCCCTCGCCGTTCCCTCTCCGCCCCTTTGCCCATCGTTTGCG
TTCCCACTCATTCATTGCCAATGGGGTGACATTCGGGGTGCTCTCAGATG
GCGCTTGATGACTACGGCCTTGATGAGGTATCGGCGCTCTTTTCGGGGGC
TAAGATGACCGCGGGTCTCCAGGTGAGGGATGTCCTTCAAAGCGCGGGAC
CCCCCCCCCCCCCCCCCCCCTTCTCTCGGGTCGAATGGAAACCCCTCTCT
AGCAAGGAGGTGAACCCATTATCTAAAGAAAGGTTTGCCCTCTTTTTCTC
GCTTGCTGGTGCGTTGCCCCACCAGAGCGAACTGTGCGCGCAGGCTCTTT
GCCGTCGGAGATGACGGTGGCACGAAACGAAGACACGTCTCTACGAAACC
CTCCTCCTGTCCGTCGTGACCCACCCCTGCCGATACGTCAAACGTACACC
GAGAAGTGTAGACAGGCACCAGCAATGACACTACGAAAAACCGCAATAAA
TAATCCCGCCATCCCCTTAGACCCCTCCCCGCGGTACCCCCCCCCCCCGC
CTCTCAGTGCTTGATTTTGTTAGTAGTGGAAGTGCCTCGTGCTGCCGGCG
GCCTTTCTCCTCGCCTGCTGCCTCACCTTTGGGGGGTGGGAGTCATGGAA
ATAGAACACCAACAGCCTGAGGGGCCCGTCGTGTCCGGCGAGGGGGCAGG
GATAGGGGTCGGGGATGCAGGCGACTGGGGGGAGGGGAGGGAGAGGGCGC
GGCTAGCGTGCCTGCTGCTGGTGAACGGGGTGTTCCTGTACGGGCACCTG
CTGGTGCTGTTCGCTCTACTGTCGAGGCTCTCGGCCACCATGTTCGTGAT
CTCTAGGTGCGGTCTTTACCTGTTGAACATACGAATAGAAATCACAGCAA
GGCTGTGTGCCCGTCAGAGATAGAGATTGTACCACGGCGGTCGAAGGGAA
GGGCGTGTGTTGAAGTCTCAACGGTGACTGGAGGGGAAACTTGGTTGTCC
GAAAGTGACGACGGCAACCTAGGGTCGTCCTCTCCACGCGGGCGCTGATG
GTGTAGGTGTCATCGTGAGAAATGTGGTGTGCTCTGGTATTCTCTGTCTG
TTCGCCTGCCTGTCTCTGTGCAGACCGTTTTAGGTGCGGAGAACATTCTG
TACCGACTCAAAATAAAGTTTTTCCACGACCGCCTTCCAGATGTTATGCT
GATTCTATGCCGGGACTTTTTTGTCGACTTTTTTTTCGAGGAGCGTCTTC
CTTTCATCCAACATTTCTTCGAGGAGCGTCTTCCTTCGTTTTCTCAATCT
AGGCAGCGTTGGATGCCAGCCATCAGTCAAGCTCCCCCCCATTGCAGTGT
TCGCCCTAGCCTTAACCCTAGACACTTGTGTGTTAAAGTATACATCGACA
TGTCCCCCCTCACAGCAGTGGGTTGTGCCGTCGCCCGGTCTGTTTGTCGT
CCTACTCAGCGGGCCGGTGGGACGCATCTTGCACCGTTCGTGGGAGTTCT
AACCCAAGCTGCTTTGTGCCCAAGCTCTACTCGCGATTTGTCTACTCTCC
TCGTGCTCCCACCACCACCACGACGCATATTTTGTTTTGCGGCTTTGTGC
CCTCGCTGTTCCCCACACAATGGTCTACTCTCCGAATGACCCTCCTACTC
AATGGTCTGGCGACTACGGCATGCGTCTACATCAGAGTACCCCCCCGCCC
GTATTTATTTATGCCGCCTTGTGTCCTCGCTGTTCACCACACGATGGTCT
GCTGCCCGAATGTCTCGGCCACCCCCTCATTTCCACCCCACACGACCTGT
CGCTGTCGCTCCCTTTGCAGTGGGTACGTGCGCGCTGCTCTGGTGTTTGT
GCTGCTGCTGGCCCTCAGAGGCTCCACCGCTGGCCCTCGCATCGTGGGCA
TGTCTCTCGCCACGCTCGCCGTCTCGGCTCATTTCTACCGGGCCTACGTC
CGAGGGAGGTGAGGAGAGAAGACTGTCTTGGTTGAACCTTGTGTTGTGCT
TCTTCAAAATATGTCGCACACGGGCTTTGTTTGTTCGCACGTGCTTTTGA
ACAGAGTGGTGCTGACGAGGTGTGTATTTTTGCTGTGTGGTCGTATAGGA
ATGAATGCATCCCGACTACAGGAAGGCTGGTGTCCTCCTCCTGGCATGGA
GCGGTGTGTAGGGCGTGAGGTAGACCCAGTGTGCTTGCTGCATGTGTTGT
GAGGGAACGAAAATCGGCGATATGTGACGATCCGATGTCGTGCCACCTTC
CTCGATTTCTTTCATTACGCCGTTGTTGGCTTCTGTCCTCGAGTCGACTC
GCGCGTTCTTGGGGCAAGGTGCTTAGTGGTGTCGATGTAGCCTGATTGTG
CGGATACATTTCAAGTACACCGCAAAAAGGTAGTTGACCACACAGCCATG
TAGCCTGTTACTGGTGCATATCAATCACAACGCAGAAAAGGTGAATGAAC
CACACAGTCGACCCACCCATCGGAAACCGTTTGTTCTCGCAGGGCGACGT
CCTCCCTCCTGAACTCGGCGGACAACGCCGACGGCCCCCCGCGCGATGCC
GATGACGGCGGCGAGGCCGGGGGCGACGCAACCGTCGCCGCCGGCGGCGG
ACAGGAACCCATCTCCTTCGCGCCCCCGTCCCCTCCCCCCCACCGCCGCA
GGCTGCCCCGGCTCCTTCGCCGCGATAACGACACGTCACCGGCAGCGGCG
GCTCCGCTTTCTAATTCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15623:3..3120-

>mRNA_Ecto-sp13_S_contig15623.4174.1 ID=mRNA_Ecto-sp13_S_contig15623.4174.1|Name=mRNA_Ecto-sp13_S_contig15623.4174.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=900bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15623:3..3120- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGCGGCCGGGATTGGCATCGGTGCCCACCCTGCTGCTAGCTCTTGG
CCTCGCGCTAGCGGCTACCCCGACAGCGGGGGACCTTAGGGCCGGGTGGG
GGGGGCTCCGCGCGAGCCTGGCGGCCAACATGCTCCTCGCCGTTCGCGCC
ATCGCAGCAAAGATGGCGCTTGATGACTACGGCCTTGATGAGGTATCGGC
GCTCTTTTCGGGGGCTAAGATGACCGCGGGTCTCCAGTGCTTGATTTTGT
TAGTAGTGGAAGTGCCTCGTGCTGCCGGCGGCCTTTCTCCTCGCCTGCTG
CCTCACCTTTGGGGGGTGGGAGTCATGGAAATAGAACACCAACAGCCTGA
GGGGCCCGTCGTGTCCGGCGAGGGGGCAGGGATAGGGGTCGGGGATGCAG
GCGACTGGGGGGAGGGGAGGGAGAGGGCGCGGCTAGCGTGCCTGCTGCTG
GTGAACGGGGTGTTCCTGTACGGGCACCTGCTGGTGCTGTTCGCTCTACT
GTCGAGGCTCTCGGCCACCATGTTCGTGATCTCTAGTGGGTACGTGCGCG
CTGCTCTGGTGTTTGTGCTGCTGCTGGCCCTCAGAGGCTCCACCGCTGGC
CCTCGCATCGTGGGCATGTCTCTCGCCACGCTCGCCGTCTCGGCTCATTT
CTACCGGGCCTACGTCCGAGGGAGGGCGACGTCCTCCCTCCTGAACTCGG
CGGACAACGCCGACGGCCCCCCGCGCGATGCCGATGACGGCGGCGAGGCC
GGGGGCGACGCAACCGTCGCCGCCGGCGGCGGACAGGAACCCATCTCCTT
CGCGCCCCCGTCCCCTCCCCCCCACCGCCGCAGGCTGCCCCGGCTCCTTC
GCCGCGATAACGACACGTCACCGGCAGCGGCGGCTCCGCTTTCTAATTCC
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