mRNA_Ecto-sp13_S_contig15591.4158.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15591.4158.1
Unique NamemRNA_Ecto-sp13_S_contig15591.4158.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15591.4158.1 vs. uniprot
Match: D7FTU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU0_ECTSI)

HSP 1 Score: 585 bits (1507), Expect = 4.440e-206
Identity = 315/372 (84.68%), Postives = 330/372 (88.71%), Query Frame = 1
Query:  436 MTFVYPVGIPFALGWWLFRHRVDLRADEVGRRANSRITPAADLWGPYRPERYYYEVIECFRRIALTGFAVFIYPDSSAQIAIVLLLAVVFMVVSEILSPFARPVEMWLYRAGHYVVFASMYLALLLRVDVSDERNQSQGVFAVVVVVAHACMVVVVLAQGLLIFMGWEGKTEKNERQTVFPAPAEGRASVAADWSFIGSQGGLRGNEKGG---RXXXXXXXXXGSGGEEVSTHNPLYAESNNDGXXXXXXXFGHPRRRHAGAGREDNGQGRVSVGGNAENADNGREV-----APPAAKESFFPVSPSGPRRQMPEQRATYMPDSSASVVSRRSNPTCETHEGHELNVSEDFSVVLSEANPAGAAGADGFVTI 1527
            MTFVYPVGIPFALGWWLFRHRVDLRADEVGRR+NSRITPAADLWGPYRPERYYYEVIECFRRIALTGFAVFIYPDSSAQIAIVLLLAVVFMVVSEILSPFARPVEMWLYRAGHYVVFASMYLALLLRVDVSDE +QSQGVFAVVVVVAHACMV+VVL QGLLIFMGWEGKT+KNERQTVFPAPAE RAS+A DWSF+GSQGGL GNEK G    XXXXXX   G GGEEVSTHNPLYAESNNDG       FG+PRRRHAGAGREDNG   VS GG+AENAD G EV     A PAAKESFFPVSPSGPRRQMPEQ+AT+MP SSA+VV+RRSNPT    EGHELNVSED+SVVLS+A+ AG A ADGF TI
Sbjct:    1 MTFVYPVGIPFALGWWLFRHRVDLRADEVGRRSNSRITPAADLWGPYRPERYYYEVIECFRRIALTGFAVFIYPDSSAQIAIVLLLAVVFMVVSEILSPFARPVEMWLYRAGHYVVFASMYLALLLRVDVSDEGDQSQGVFAVVVVVAHACMVLVVLGQGLLIFMGWEGKTDKNERQTVFPAPAESRASLATDWSFLGSQGGLLGNEKDGGXXXXXXXXXYGEGRGGEEVSTHNPLYAESNNDGGGRDGGGFGYPRRRHAGAGREDNGHAGVSAGGDAENADEGEEVKGEEVAAPAAKESFFPVSPSGPRRQMPEQQATFMPGSSAAVVARRSNPTGGAQEGHELNVSEDYSVVLSDADFAGTAAADGFSTI 372          
BLAST of mRNA_Ecto-sp13_S_contig15591.4158.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI)

HSP 1 Score: 343 bits (879), Expect = 9.180e-101
Identity = 166/231 (71.86%), Postives = 197/231 (85.28%), Query Frame = 1
Query:  250 IQNRHLSVALLLVFVVYPTVSHTILDTFVCDTLDDGQSYLRADYSLDCDSPIHQRFKIYAALMTFVYPVGIPFALGWWLFRHRVDLRADEVGRRANSRITPAADLWGPYRPERYYYEVIECFRRIALTGFAVFIYPDSSAQIAIVLLLAVVFMVVSEILSPFARPVEMWLYRAGHYVVFASMYLALLLRVDVSDERNQSQGVFAVVVVVAHACMVVVVLAQGLLIFMGWEG 942
            +Q RHLSV L ++FV+Y  VS+TI +TFVCDTLDDG SYLRADYSL CD+P+H  +++YA L   VYPVGIP   GWWLF++R +L+ ++  R + + + PAADLW PY+P  YYYEV+ECFRRIALTGFAVFIYPDSSAQ+AIVLLLA VFMVVSEILSPFARPVEMWLYRAGHYVVFASMYLALLLRVDVSDER+QSQ VF+ V+V+AH  M +VV+AQGLLIF+GW+G
Sbjct:  812 VQRRHLSVTLFVMFVIYAAVSYTIFETFVCDTLDDGNSYLRADYSLTCDTPLHTAYRVYAGLAVLVYPVGIPCVFGWWLFKNRHELKQED--RESQAELRPAADLWEPYKPSAYYYEVVECFRRIALTGFAVFIYPDSSAQVAIVLLLAAVFMVVSEILSPFARPVEMWLYRAGHYVVFASMYLALLLRVDVSDERDQSQEVFSGVIVIAHVAMFLVVVAQGLLIFVGWDG 1040          
BLAST of mRNA_Ecto-sp13_S_contig15591.4158.1 vs. uniprot
Match: A0A6H5L324_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L324_9PHAE)

HSP 1 Score: 340 bits (871), Expect = 1.060e-99
Identity = 165/231 (71.43%), Postives = 195/231 (84.42%), Query Frame = 1
Query:  250 IQNRHLSVALLLVFVVYPTVSHTILDTFVCDTLDDGQSYLRADYSLDCDSPIHQRFKIYAALMTFVYPVGIPFALGWWLFRHRVDLRADEVGRRANSRITPAADLWGPYRPERYYYEVIECFRRIALTGFAVFIYPDSSAQIAIVLLLAVVFMVVSEILSPFARPVEMWLYRAGHYVVFASMYLALLLRVDVSDERNQSQGVFAVVVVVAHACMVVVVLAQGLLIFMGWEG 942
            +Q RHLSV L ++FV+Y  VS+TI +TFVCDTLDDG SYLRADYSL CD+P+H  +++YA L   VYPVGIP   GWWLF++R +L+ ++  R   + + PAADLW PY+P  YYYEV+ECFRRIALTGFAVFIYPDSSAQ+AIVLLLA VFMVVSEILSPFARPVEMWLYRAGHYVVFASMYLALLLRVDVSDER+QSQ VF+ V+V+AH  M +VV+ QGLLIF+GW+G
Sbjct:  793 VQRRHLSVTLFVMFVIYAAVSYTIFETFVCDTLDDGNSYLRADYSLTCDTPLHTAYRVYAGLAVLVYPVGIPCIFGWWLFKNRHELKQED--REGQAELRPAADLWEPYKPSAYYYEVVECFRRIALTGFAVFIYPDSSAQVAIVLLLAAVFMVVSEILSPFARPVEMWLYRAGHYVVFASMYLALLLRVDVSDERDQSQEVFSGVIVMAHVAMFLVVVVQGLLIFVGWDG 1021          
BLAST of mRNA_Ecto-sp13_S_contig15591.4158.1 vs. uniprot
Match: D7FTU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU5_ECTSI)

HSP 1 Score: 339 bits (870), Expect = 1.260e-99
Identity = 172/265 (64.91%), Postives = 205/265 (77.36%), Query Frame = 1
Query:  247 VIQNRHLSVALLLVFVVYPTVSHTILDTFVCDTLDDGQSYLRADYSLDCDSPIHQRFKIYAALMTFVYPVGIPFALGWWLFRHRVDLRADEVGRRANSRITPAADLWGPYRPERYYYEVIECFRRIALTGFAVFIYPDSSAQIAIVLLLAVVFMVVSEILSPFARPVEMWLYRAGHYVVFASMYLALLLRVDVSDERNQSQGVFAVVVVVAHACMVVVVLAQGLLIFMGWEGKTEKNERQTVFPAPAEGRASVAADWSFIGSQGG 1041
            V+++RHLSVAL ++FV+Y TVS+TI +TFVCD LDDG SYLR+DYSL CD+  H  +++YA LM  VYPVGIP   GWWLF+HR +L+ +  GR   + + PAADLW PY+P  YYYEV+ECFRRIALTGFAVFIYPDSSAQ+AIVLLLA+VFMVVSE LSPFARPVEMWLYR GHYVVFASMYLALLLRVDVSDERNQSQ VF+ V+V+AHA M++VV+ QGLLIF GW    E             G  +   D +F+  +GG
Sbjct:  805 VVKHRHLSVALFIMFVIYATVSYTIFETFVCDPLDDGNSYLRSDYSLTCDTETHTAYRVYAGLMILVYPVGIPCVFGWWLFKHRHELKQE--GRERRAVLKPAADLWEPYKPSTYYYEVVECFRRIALTGFAVFIYPDSSAQVAIVLLLAIVFMVVSEFLSPFARPVEMWLYRTGHYVVFASMYLALLLRVDVSDERNQSQEVFSGVLVIAHAAMLLVVVLQGLLIFAGWGDLVE-----------TPGALANLDDTAFVSKRGG 1056          
BLAST of mRNA_Ecto-sp13_S_contig15591.4158.1 vs. uniprot
Match: A0A6H5L0E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0E1_9PHAE)

HSP 1 Score: 316 bits (810), Expect = 3.190e-93
Identity = 164/269 (60.97%), Postives = 194/269 (72.12%), Query Frame = 1
Query:  247 VIQNRHLSVALLLVFVVYPTVSHTILDTFVCDTLDDGQSYLRADYSLDCDSPIHQRFKIYAALMTFVYPVGIPFALGWWLFRHRVDLRADEVGRRANSRITPAADLWGPYRPERYYYE---------------------------------------VIECFRRIALTGFAVFIYPDSSAQIAIVLLLAVVFMVVSEILSPFARPVEMWLYRAGHYVVFASMYLALLLRVDVSDERNQSQGVFAVVVVVAHACMVVVVLAQGLLIFMGW 936
            V+++RHLSVAL ++FV+Y TVS+TI +TFVCD LDDG SYLRADYSL C++  H  +++YA LM  VYPVGIP   GWWLF+HR +L+ +  GR   + + PAADLW PY+P  YYYE                                       V+ECFRRIALTGFAVFIYPDSSAQ+AIVLLLA+VFMVVSE LSPFARP+EMWLYR GHYVVFASMYLALLLRVDVSDE NQSQ VF+ V+V+AHA M++VV+ QGLLIF GW
Sbjct:   11 VVKHRHLSVALFVMFVIYATVSYTIFETFVCDPLDDGISYLRADYSLTCETETHTAYRVYAGLMILVYPVGIPCVFGWWLFKHRHELKQE--GRERRAALKPAADLWEPYKPSTYYYEAAQPPPYLDKLPRRLSSQCLPCPPASADMPPSATPTLEKVVECFRRIALTGFAVFIYPDSSAQVAIVLLLAIVFMVVSEFLSPFARPIEMWLYRTGHYVVFASMYLALLLRVDVSDENNQSQEVFSGVLVIAHAAMLLVVVLQGLLIFAGW 277          
BLAST of mRNA_Ecto-sp13_S_contig15591.4158.1 vs. uniprot
Match: A0A6H5KHA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHA3_9PHAE)

HSP 1 Score: 237 bits (605), Expect = 3.770e-69
Identity = 118/223 (52.91%), Postives = 153/223 (68.61%), Query Frame = 1
Query:  256 NRHLSVALLLVFVVYPTVSHTILDTFVCDTLDDGQSYLRADYSLDCDSPIHQRFKIYAALMTFVYPVGIPFALGWWLFRHRVDLRADEVGRRAN-SRITPAADLWGPYRPERYYYEVIECFRRIALTGFAVFIYPDSSAQIAIVLLLAVVFMVVSEILSPFARPVEMWLYRAGHYVVFASMYLALLLRVDVSDERNQSQGVFAVVVVVAHACMVVVVLAQGLL 921
            ++HLS+AL +VF +Y +VS TI  TF+C+TLDD   YLRADYSL C +  H   ++YA LM  VYP+GIP    WWL  +R DL  D  G       + P  DLW PY+P RY+YE++EC RRI LTG AVF++P ++AQ+AI +  A   +VV E+L+PF  P++ WLYR+G  VVF SMYLALLL+VD SDE ++SQ VFA V+V AH  MV+ VL   LL
Sbjct:  138 DKHLSIALFIVFAIYSSVSFTIFQTFMCETLDDEVEYLRADYSLTCSTSTHTIMEVYAGLMVLVYPIGIPAVFAWWLASNRKDLVQDRSGGTTTPENLRPMKDLWEPYKPRRYFYELVECGRRIVLTGLAVFLFPGTAAQVAIEVAFAAGLLVVFEVLAPFVDPMDAWLYRSGALVVFFSMYLALLLKVDASDENSESQQVFAAVLVAAHVSMVLAVLLSSLL 360          
BLAST of mRNA_Ecto-sp13_S_contig15591.4158.1 vs. uniprot
Match: D7FPF7_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF7_ECTSI)

HSP 1 Score: 236 bits (601), Expect = 1.350e-68
Identity = 121/239 (50.63%), Postives = 164/239 (68.62%), Query Frame = 1
Query:  235 AVVTVIQNRHLSVALLLVFVVYPTVSHTILDTFVCDTLDDGQSYLRADYSLDCDSPIHQRFKIYAALMTFVYPVGIPFALGWWLFRHRVDL-RADEVG-----RRANSRITPAADLWGPYRPERYYYEVIECFRRIALTGFAVFIYPDSSAQIAIVLLLAVVFMVVSEILSPFARPVEMWLYRAGHYVVFASMYLALLLRVDVSDERNQSQGVFAVVVVVAHACMVVVVLAQGLLIFMG 933
            A +   +++HLS+AL ++FVVY +VS  I  TFVC+TLDDG  YLRADYSL C +  H   K+YA LM FVYP GIP     WL  +R DL + D  G      ++   + P  DLW PY+P RYY+EV+EC RRIALTG AVFIYP S+AQ+A+ ++ A  F+ +S++LSPFA P++ WLYR+G +V+F SM+L LLL+VD SDE +QSQ +FA +++ AH  MV+ +  Q +L   G
Sbjct:  151 AGIQTAKHKHLSIALFIMFVVYSSVSFNIFQTFVCETLDDGVEYLRADYSLVCSTDTHTAMKVYAGLMIFVYPFGIPAFFTLWLVSNRHDLVKVDANGGSTATAKSLGNLQPMRDLWAPYKPRRYYFEVVECGRRIALTGLAVFIYPGSAAQVALEVVFAAFFIGISDVLSPFADPLDAWLYRSGAWVIFISMFLTLLLKVDASDEDSQSQELFAKLLISAHVGMVLAIAVQAVLSVKG 389          
BLAST of mRNA_Ecto-sp13_S_contig15591.4158.1 vs. uniprot
Match: A0A6H5JSF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF5_9PHAE)

HSP 1 Score: 246 bits (629), Expect = 3.110e-68
Identity = 125/241 (51.87%), Postives = 170/241 (70.54%), Query Frame = 1
Query:  226 EEEAVVTVIQNRHLSVALLLVFVVYPTVSHTILDTFVCDTLDDGQSYLRADYSLDCDSPIHQRFKIYAALMTFVYPVGIPFALGWWLFRHRVDLRADEVGRRANSRITPAADLWGPYRPERYYYEVIECFRRIALTGFAVFIYPDSSAQIAIVLLLAVVFMVVSEILSPFARPVEMWLYRAGHYVVFASMYLALLLRVDVSDERNQSQGVFAVVVVVAHACMVVVVLAQGLLIFMGWEGKT 948
            + EA V  ++N+HLS AL ++F +Y +VS T+  TFVCDTLDDG SYLRADYSL CD+P +  F+ YAA+M  VYP+GIP    W L  +R DL+  +  R AN  + P  DLW  Y+P RYYYE+IE  RRI LTG AVF+ P SSAQ+A+VLLLAVVF+ +SE LSPF + ++M LYR G+ VV AS+Y+ALLL+V+VS+E +++   F VV+++A+ CM + ++ Q  L+   W   T
Sbjct:  796 DSEAAVRAVKNKHLSAALFVMFFIYSSVSFTVFQTFVCDTLDDGVSYLRADYSLTCDTPRYGAFRGYAAVMVCVYPIGIPATFAWLLGSNRQDLQKADRDRLAN--LQPLGDLWEAYKPSRYYYEIIEYVRRIVLTGVAVFVLPGSSAQMAVVLLLAVVFLFISESLSPFTKKIDMALYRWGNGVVLASIYVALLLKVNVSEEGSETLSAFVVVLILANVCMAITLVVQSFLLVREWRSST 1034          
BLAST of mRNA_Ecto-sp13_S_contig15591.4158.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE)

HSP 1 Score: 245 bits (626), Expect = 1.360e-67
Identity = 126/231 (54.55%), Postives = 160/231 (69.26%), Query Frame = 1
Query:  253 QNRHLSVALLLVFVVYPTVSHTILDTFVCDTLDDGQSYLRADYSLDCDSPIHQRFKIYAALMTFVYPVGIPFALGWWLFRHRVDLRADEVGRRAN--------SRITPAADLWGPYRPERYYYEVIECFRRIALTGFAVFIYPDSSAQIAIVLLLAVVFMVVSEILSPFARPVEMWLYRAGHYVVFASMYLALLLRVDVSDERNQSQGVFAVVVVVAHACMVVVVLAQGLL 921
            +++HLS+AL + FVVY +VS  I  TFVC+TLDDG +YLRADYSL C + +H     YA LM  VYPVGIP    WWL  +R DL   +VG   N          + P  DLW  Y+P RYY+EV+EC RRIALTG A F+ PDS+AQ+AI ++LA +FM VS++LSPFA P + WLYR G +++F SMYLALLL+VD SDE +QSQ  FA V++ AH  MV+VVL Q +L
Sbjct:  833 KSKHLSIALFISFVVYSSVSFNIFQTFVCETLDDGVTYLRADYSLTCSTGVHTAMMAYAGLMILVYPVGIPTVYSWWLLSNRHDLV--KVGTSGNCLGGAPRLDHLQPMRDLWSSYKPRRYYFEVLECGRRIALTGLAAFLLPDSAAQVAIEVVLAAIFMAVSDVLSPFADPFDGWLYRTGAWIIFFSMYLALLLKVDASDEDSQSQAAFAKVLIAAHVGMVLVVLVQAVL 1061          
BLAST of mRNA_Ecto-sp13_S_contig15591.4158.1 vs. uniprot
Match: D7FUB5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB5_ECTSI)

HSP 1 Score: 232 bits (592), Expect = 1.390e-67
Identity = 128/259 (49.42%), Postives = 166/259 (64.09%), Query Frame = 1
Query:  256 NRHLSVALLLVFVVYPTVSHTILDTFVCDTLDDGQSYLRADYSLDCDSPIHQRFKIYAALMTFVYPVGIPFALGWWLFRHRVDL-RADEVGRRANSRITPAADLWGPYRPERYYYEVIECFRRIALTGFAVFIYPDSSAQIAIVLLLAVVFMVVSEILSPFARPVEMWLYRAGHYVVFASMYLALLLRVDVSDERNQSQGVFAVVVVVAHACMVVVVLAQGLLIF--MGWEGKTEKNERQTVFPAPAEGRASVAADWSF 1023
            ++HLS+AL +VF  Y +VS TI  TF+C+TLDD   YLRADYSL C +  H   ++YA LM  VYP+GIP    WWL  +R DL R    G      + P  DLW PY+P RY+YE++EC RRI LTG AVF++P ++AQ+AI +  A   +VV E+L+PF  PV+  LYR+G  VVF SMYLALLL+VD SDE ++SQ VFA V+V AH  MV+ VL + LL    +G E   +K E + V P     R+S  A   F
Sbjct:  116 DKHLSIALFIVFATYSSVSFTIFQTFMCETLDDEVEYLRADYSLTCSTSTHTIMEVYAGLMVLVYPIGIPAVFAWWLASNRKDLVRERSSGTATPENLRPMKDLWEPYKPRRYFYELVECGRRIGLTGLAVFLFPGTAAQVAIEVAFAAGLLVVFEVLAPFVDPVDAGLYRSGALVVFYSMYLALLLKVDASDESSESQQVFAAVLVAAHVSMVLAVLLRSLLSAKKVGIEAMRKKVEIRDV-PVANNTRSSWRASEIF 373          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15591.4158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTU0_ECTSI4.440e-20684.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTT9_ECTSI9.180e-10171.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L324_9PHAE1.060e-9971.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTU5_ECTSI1.260e-9964.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0E1_9PHAE3.190e-9360.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHA3_9PHAE3.770e-6952.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPF7_ECTSI1.350e-6850.63Probable extracellular nuclease (ISS) n=1 Tax=Ecto... [more]
A0A6H5JSF5_9PHAE3.110e-6851.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWI3_9PHAE1.360e-6754.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUB5_ECTSI1.390e-6749.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15591contigEcto-sp13_S_contig15591:3..3606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score346.3
Seed ortholog evalue2.5e-92
Seed eggNOG ortholog2880.D7FTT9
Model size1530
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs2BFIX@1,2S176@2759
Cds size1530
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462826.6702042-CDS-Ecto-sp13_S_contig15591:2..3931681462826.6702042-CDS-Ecto-sp13_S_contig15591:2..393Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15591 3..393 +
1681462826.683739-CDS-Ecto-sp13_S_contig15591:1454..16631681462826.683739-CDS-Ecto-sp13_S_contig15591:1454..1663Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15591 1455..1663 +
1681462826.6919746-CDS-Ecto-sp13_S_contig15591:2246..24981681462826.6919746-CDS-Ecto-sp13_S_contig15591:2246..2498Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15591 2247..2498 +
1681462826.704692-CDS-Ecto-sp13_S_contig15591:2928..36061681462826.704692-CDS-Ecto-sp13_S_contig15591:2928..3606Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15591 2929..3606 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15591.4158.1prot_Ecto-sp13_S_contig15591.4158.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15591 3..3606 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15591.4158.1

>prot_Ecto-sp13_S_contig15591.4158.1 ID=prot_Ecto-sp13_S_contig15591.4158.1|Name=mRNA_Ecto-sp13_S_contig15591.4158.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=510bp
GVLSCTYLLALRRNNHHSRNSPGVSSFFVAAEASLASERDAPHSPVLHTQ
QQQQQQQQQQQQQQQQQQLPAGPSPEEEAVVTVIQNRHLSVALLLVFVVY
PTVSHTILDTFVCDTLDDGQSYLRADYSLDCDSPIHQRFKIYAALMTFVY
PVGIPFALGWWLFRHRVDLRADEVGRRANSRITPAADLWGPYRPERYYYE
VIECFRRIALTGFAVFIYPDSSAQIAIVLLLAVVFMVVSEILSPFARPVE
MWLYRAGHYVVFASMYLALLLRVDVSDERNQSQGVFAVVVVVAHACMVVV
VLAQGLLIFMGWEGKTEKNERQTVFPAPAEGRASVAADWSFIGSQGGLRG
NEKGGRNGGGDDNGEGSGGEEVSTHNPLYAESNNDGGGRGGGGFGHPRRR
HAGAGREDNGQGRVSVGGNAENADNGREVAPPAAKESFFPVSPSGPRRQM
PEQRATYMPDSSASVVSRRSNPTCETHEGHELNVSEDFSVVLSEANPAGA
AGADGFVTI*
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mRNA from alignment at Ecto-sp13_S_contig15591:3..3606+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15591.4158.1 ID=mRNA_Ecto-sp13_S_contig15591.4158.1|Name=mRNA_Ecto-sp13_S_contig15591.4158.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3604bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15591:3..3606+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGTCCTCAGCTGCACGTACCTCCTGGCCCTTCGGCGCAACAACCACCA CAGCCGCAACAGCCCCGGCGTTTCCTCTTTCTTCGTCGCAGCGGAGGCGT CGTTGGCGAGTGAGCGGGATGCACCTCACTCGCCAGTTCTACACACACAG CAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAACAACAGCAACAACAGCA ACAACTTCCAGCCGGCCCTTCGCCGGAAGAAGAAGCCGTCGTAACGGTCA TCCAGAACCGGCACCTCTCTGTGGCCCTGCTGCTGGTGTTCGTGGTCTAC CCTACGGTCTCCCACACCATCCTCGACACCTTCGTCTGCGACACCCTGGA CGACGGACAGTCGTACCTACGGGCCGACTACAGCCTGGACTGTGAGTATT GTTGCGTTTTGAAGCCACCCAAGCTTGTCATGCTCTCTGTCACTCCCACC GCACGTGTTGTCTTTCGACTCTAGAGCACCCGGCGGAGAGGTGGCACCTT CCCCCTACGCTGAGTTTCAAGACTGCGCCAACACAAAAATGGCGGTTTTC AACACGTCTAAGAGAGTCCTTTCCGTAGAATTGTCGGGCTATTTCCGCAC CCCCTTGGCTGTGGAGCAATGGAGCTTCCGAAGTCGACCTAGGGCGGGTG CCATCTCTCCGCCTCGGTCGGTACGCGGTTCTCCCCCTTTTGTGCCTGAG AAGTCCGCATGTTTGTGTCGTCGACCCTGTTGCGAATGAATCTCGCGGTA GCGGTGTCCCCGGCAGAGGAATAGTAAACCTCGGCATCTGGTTTAGCCCC CAGCGAAGATGACTCCCACGACGAACTGGACTAAACATTCCTTCGGGTAC GCGTCCAGGAGAGTCGTGGGTGCAAGCGTGTCCTATTTTCTTTGGTATCG TTTTTTTGGGGTACGGCGGCTACGACGAAGCTTGCGACCCCGCATCGCAC TCAACATATATATCTCTCTATCTCTCTCTACCTTTGTCTCTCTCTATCTC TCTCTCAAAACCAAACCTGTCTTTATTATCCTGAGAGAAGCATACCTTCC CCCTCACGGGTTCAACAGATGATGGCGTTAAGAGAATGTTCTGCTTTTAA ACCGCGCTGAGACTGGCACATTTTCACTAATCAGCCGATTGGCGCGGTCG ATGCTAGTAGTCCCCTTCGGGAGACAGCTGGCTTGCCTCCTGGGGGCGAC GCAAGAGGACATGGTCAACGGAGAAGTGTTCTGTGTTGTGGTTTTGGATA CTAACATTTTCCAGTTTTGGGGATGCAACATCAAAACTGCACACGCACAC ACTTCTCCCCCCCCCCCCTCAATTTCTTTCCGGCTGTCGGTGTGGTGGTA CGCTTGCGGGCCGGCCAATACACGCATGCCGCCACCACCGTCACCGCCGT CACCGCCGCCACCACCGTCACCGCCGTCACCGCCGTCACCGCCGTGTGGC AGGCGACTCACCTATCCACCAACGCTTCAAGATCTACGCCGCGCTGATGA CCTTCGTTTACCCCGTGGGGATACCGTTCGCGCTCGGCTGGTGGCTGTTC CGCCACCGGGTGGACCTGCGCGCGGACGAAGTCGGAAGGAGGGCCAATTC CCGGATCACCCCGGCCGCTGACCTGTGGGGGCCGTACAGGCCGGAGAGGT ATTACTACGAGGTGAGTATGCTCTCGAGTCTGTTGCCGTAGAATTCGTGA GGTTTGGTTGCATTTTGGCACCTGCTTTGCCATGACGCAGAAGTGCATCA GTGTCAGCAAAGGGAGGGGCAGCGAGCTTGGCCGGTGGTGGCTTCTTCCC TGTAGCTACAGGCACCGTGTGGTTGTATGCTGCAGGACAACGCTTGTGGG GAACGCGCGGGCTTCACTTGTGTCCCGCCGCGCGCTTGTTGACGAGATAG GTTCCGCACTTCAGGGACGCACTTGCGCAACTTGTAGGCTTTTCTCCGGT CGCTACACGACACATCCCGAGCGCCATGCCTGTGGCGGAGACAGTGTCCT TTCCTTGATGTTCGGTCGGGCTGCATCCTCGAGCAACTCCTGCAAACTCA CTTCCCCGTCGCTTCCTACGGTTACCCATGTTCCTTTCTCCTCCGACTCT CGATGTGTGTGTGTGTCTGTCTGTCTGTCTATTTGTCTCTCTCTCTCTCT GTCTCTCTCTCTCTGTCTCTGTATATCTCTCTCTTTGTTTCTCTGTCTTT TTCGCTCTCTATCTATCTGACCCTCCCCCCCTTCAAACCACAAGGTGATC GAGTGCTTCCGGCGTATCGCCCTCACCGGGTTCGCGGTCTTCATCTACCC GGACAGCTCCGCACAGATCGCGATCGTTCTGCTCCTCGCGGTCGTCTTCA TGGTGGTGTCCGAGATCCTGTCGCCCTTCGCCCGGCCCGTCGAGATGTGG CTCTACCGCGCCGGACACTACGTGGTGTTCGCCAGCATGTATCTCGCCTT GCTGCTGCGGGTGGATGTCTCCGACGAGCGAAACCAGAGCCAAGGGGTGA GAGACATTTCGTCCAAAGCTTCAGAGGCTCATGCGTGCATTTCTCGGGCA GCCAAGCAAGGGATGGAGCGAGTCTCTTATCTTGCCTGATATTATAACTG CCCGCTGCTGCATGTGTGCTTTGCGCTACTGTGCCGTTTTTCGGCGTTTC GGGCCGGCCACCTTGTCTCCCACAGGCACACAGGGGCGAGATTACATGAC CCATCATTTCTCGTCGGGTGCACACCGCCCGATGTCCTTTTCCCACCACA ATAGATCCGTGTACCCAATGGTGTCCTCTTTCGCCACCCTCGTTTTGGCG ATATCTCCATAGTGATCGGCGAGTCTTTGTTTCGTGTATCGTGTTTTGTG GCAAATAGCTTCAACGTTGCAACACAAATCAAAGAGAGAAATAACCGCAT ATGCTGCGCGGGCATGGAAAACACAGGTGTTCGCCGTCGTAGTTGTGGTT GCCCACGCTTGCATGGTGGTCGTGGTTCTCGCCCAAGGGCTGCTCATCTT CATGGGCTGGGAGGGAAAGACCGAGAAAAACGAGCGGCAGACGGTATTTC CCGCGCCTGCCGAGGGCCGCGCCAGCGTGGCCGCCGATTGGTCCTTCATC GGAAGCCAAGGCGGTCTCCGCGGGAACGAAAAGGGCGGCCGCAACGGCGG CGGCGACGATAACGGCGAGGGGAGTGGAGGGGAGGAAGTGAGCACACACA ACCCGCTCTATGCCGAGAGCAACAACGACGGTGGTGGCCGCGGTGGAGGC GGTTTCGGACACCCCCGGCGGAGACATGCGGGGGCAGGGAGGGAAGATAA CGGTCAGGGGCGAGTGTCAGTAGGGGGAAACGCCGAAAACGCAGACAACG GGAGGGAGGTGGCGCCGCCAGCAGCCAAGGAGAGCTTCTTTCCAGTTTCG CCATCGGGGCCACGGCGCCAGATGCCCGAGCAGCGAGCGACGTACATGCC GGACTCGTCTGCATCGGTGGTATCGAGGAGGTCGAACCCAACGTGTGAGA CTCACGAGGGGCACGAGTTGAACGTGTCCGAAGATTTTTCGGTGGTCCTT TCAGAAGCTAATCCCGCCGGAGCCGCTGGCGCGGACGGCTTTGTTACCAT TTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15591:3..3606+

>mRNA_Ecto-sp13_S_contig15591.4158.1 ID=mRNA_Ecto-sp13_S_contig15591.4158.1|Name=mRNA_Ecto-sp13_S_contig15591.4158.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1530bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15591:3..3606+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGTCCTCAGCTGCACGTACCTCCTGGCCCTTCGGCGCAACAACCACCA
CAGCCGCAACAGCCCCGGCGTTTCCTCTTTCTTCGTCGCAGCGGAGGCGT
CGTTGGCGAGTGAGCGGGATGCACCTCACTCGCCAGTTCTACACACACAG
CAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAACAACAGCAACAACAGCA
ACAACTTCCAGCCGGCCCTTCGCCGGAAGAAGAAGCCGTCGTAACGGTCA
TCCAGAACCGGCACCTCTCTGTGGCCCTGCTGCTGGTGTTCGTGGTCTAC
CCTACGGTCTCCCACACCATCCTCGACACCTTCGTCTGCGACACCCTGGA
CGACGGACAGTCGTACCTACGGGCCGACTACAGCCTGGACTGCGACTCAC
CTATCCACCAACGCTTCAAGATCTACGCCGCGCTGATGACCTTCGTTTAC
CCCGTGGGGATACCGTTCGCGCTCGGCTGGTGGCTGTTCCGCCACCGGGT
GGACCTGCGCGCGGACGAAGTCGGAAGGAGGGCCAATTCCCGGATCACCC
CGGCCGCTGACCTGTGGGGGCCGTACAGGCCGGAGAGGTATTACTACGAG
GTGATCGAGTGCTTCCGGCGTATCGCCCTCACCGGGTTCGCGGTCTTCAT
CTACCCGGACAGCTCCGCACAGATCGCGATCGTTCTGCTCCTCGCGGTCG
TCTTCATGGTGGTGTCCGAGATCCTGTCGCCCTTCGCCCGGCCCGTCGAG
ATGTGGCTCTACCGCGCCGGACACTACGTGGTGTTCGCCAGCATGTATCT
CGCCTTGCTGCTGCGGGTGGATGTCTCCGACGAGCGAAACCAGAGCCAAG
GGGTGTTCGCCGTCGTAGTTGTGGTTGCCCACGCTTGCATGGTGGTCGTG
GTTCTCGCCCAAGGGCTGCTCATCTTCATGGGCTGGGAGGGAAAGACCGA
GAAAAACGAGCGGCAGACGGTATTTCCCGCGCCTGCCGAGGGCCGCGCCA
GCGTGGCCGCCGATTGGTCCTTCATCGGAAGCCAAGGCGGTCTCCGCGGG
AACGAAAAGGGCGGCCGCAACGGCGGCGGCGACGATAACGGCGAGGGGAG
TGGAGGGGAGGAAGTGAGCACACACAACCCGCTCTATGCCGAGAGCAACA
ACGACGGTGGTGGCCGCGGTGGAGGCGGTTTCGGACACCCCCGGCGGAGA
CATGCGGGGGCAGGGAGGGAAGATAACGGTCAGGGGCGAGTGTCAGTAGG
GGGAAACGCCGAAAACGCAGACAACGGGAGGGAGGTGGCGCCGCCAGCAG
CCAAGGAGAGCTTCTTTCCAGTTTCGCCATCGGGGCCACGGCGCCAGATG
CCCGAGCAGCGAGCGACGTACATGCCGGACTCGTCTGCATCGGTGGTATC
GAGGAGGTCGAACCCAACGTGTGAGACTCACGAGGGGCACGAGTTGAACG
TGTCCGAAGATTTTTCGGTGGTCCTTTCAGAAGCTAATCCCGCCGGAGCC
GCTGGCGCGGACGGCTTTGTTACCATTTAG
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