mRNA_Ecto-sp13_S_contig1555.4130.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1555.4130.1 vs. uniprot
Match: D7G0I7_ECTSI (PhyA2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0I7_ECTSI) HSP 1 Score: 590 bits (1520), Expect = 1.340e-205 Identity = 276/279 (98.92%), Postives = 277/279 (99.28%), Query Frame = 2
Query: 665 QDMPRDEFTAEAFFKGFTEGWTAAGGDATVGSCPVPEPHFEEVEYLIDQGSKPRGDAGQCRLGSEQEVQGVVGKVDEWTRLLRSKLQKLNDVLGCCDRSLCPADHPEDQPCTLMDMPHVWDEEHWYVTFTGPVYAGKYFSEWFLLNYLNGMDVAWGELSEEDVMDLAAFVTEYRHFEFDLLAARPFGSALLMHVVAALDQMETGENLDAVAHTPDVKLVYYAAHDTNLLYLAELLDLKWVSKGWQPNHTPPGGELVFEAYMVDGELNVAAFFDIATPGQ 1501
+DMPRDEFTAEAFFKGFTEGWTAAGGDA VGSCPVPEPHFEEVEYLIDQGSKPRGDAGQCRLGSEQEVQGVVGKVDEWTRLLRSKLQKLNDVLGCCDRSLCPADHPEDQPCTLMDMPHVWDEEHWYVTFTGPVYAGKYFSEWFLLNYLNGMDVAWGELSEEDVMDLAAFVTEYRHFEFDLLAARPFGSALLMHVVAALDQMETGENLDAVAHTPDVKLVYYAAHDTNLLYLAELLDLKWVSKGWQPNHTPPGGELVFEAYMVDGELNVAAFFDIATP Q
Sbjct: 121 EDMPRDEFTAEAFFKGFTEGWTAAGGDAAVGSCPVPEPHFEEVEYLIDQGSKPRGDAGQCRLGSEQEVQGVVGKVDEWTRLLRSKLQKLNDVLGCCDRSLCPADHPEDQPCTLMDMPHVWDEEHWYVTFTGPVYAGKYFSEWFLLNYLNGMDVAWGELSEEDVMDLAAFVTEYRHFEFDLLAARPFGSALLMHVVAALDQMETGENLDAVAHTPDVKLVYYAAHDTNLLYLAELLDLKWVSKGWQPNHTPPGGELVFEAYMVDGELNVAAFFDIATPSQ 399
BLAST of mRNA_Ecto-sp13_S_contig1555.4130.1 vs. uniprot
Match: A0A6H5K0D8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0D8_9PHAE) HSP 1 Score: 447 bits (1149), Expect = 6.640e-154 Identity = 218/277 (78.70%), Postives = 221/277 (79.78%), Query Frame = 2
Query: 671 MPRDEFTAEAFFKGFTEGWTAAGGDATVGSCPVPEPHFEEVEYLIDQGSKPRGDAGQCRLGSEQEVQGVVGKVDEWTRLLRSKLQKLNDVLGCCDRSLCPADHPEDQPCTLMDMPHVWDEEHWYVTFTGPVYAGKYFSEWFLLNYLNGMDVAWGELSEEDVMDLAAFVTEYRHFEFDLLAARPFGSALLMHVVAALDQMETGENLDAVAHTPDVKLVYYAAHDTNLLYLAELLDLKWVSKGWQPNHTPPGGELVFEAYMVDGELNVAAFFDIATPGQ 1501
MPRDEFTAEAFFKGFTEGWTAAGGD TVGSCPVPEPHFE VEYLIDQGSKPRGDAGQCRLGSEQEVQGVVGKVDEWTRLLRSKLQKLNDVLGCCDRSLCPADHPEDQPCTLMDMPHVWDEEHWYVTFTGPVYAGKYFSEWFLLNYLNGMDVAWGEL + ARP VKLVYYAAHDTNLLYLAELLDLKWVS+GWQPNHTPPGGELVFEAYM+DGELNVAAFFDIATP Q
Sbjct: 1 MPRDEFTAEAFFKGFTEGWTAAGGDTTVGSCPVPEPHFEGVEYLIDQGSKPRGDAGQCRLGSEQEVQGVVGKVDEWTRLLRSKLQKLNDVLGCCDRSLCPADHPEDQPCTLMDMPHVWDEEHWYVTFTGPVYAGKYFSEWFLLNYLNGMDVAWGELRWGRIRQ-----------------ARP---------------------------ARRVKLVYYAAHDTNLLYLAELLDLKWVSEGWQPNHTPPGGELVFEAYMLDGELNVAAFFDIATPSQ 233
BLAST of mRNA_Ecto-sp13_S_contig1555.4130.1 vs. uniprot
Match: R1DX28_EMIHU (Uncharacterized protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DX28_EMIHU) HSP 1 Score: 336 bits (861), Expect = 4.830e-107 Identity = 168/286 (58.74%), Postives = 204/286 (71.33%), Query Frame = 2
Query: 665 QDMPRDEFTAEAFFKGFTEGWTAAGGDATVGSCPVPEPHFEEVEYLIDQGSKPRGDAGQCRLGSEQEVQGVVG-KVDEWTRLLRSKLQKLNDVLGCCDRSLCPADHPEDQPCTLMDMPHVWDEEHWYVTFTGPVYAGKYFSEWFLLNYLNGMDVAWGELSEEDVMDLAAFVTEYRHFEFDLLAARPFGSALLMHVVAALDQMETGENLDAVAHTPDVKLVYYAAHDTNLLYLAELLDLKWVSKGWQPNHTPPGGELVFEAYMVDGELN------VAAFFDIATPGQ 1501
++MPRDE TAEAFFKG C +P H E VEYLIDQGSKPRG+ GQC LG++ +V+G VG VD + RL + L KL+++LGCC +SLCPA + C+L D+P WD HWY TF+GP+YAGKYF+EW L LNGMD AWG+LS E+VM+L+AFVT+YR FEFDLLAARPFGSALL H+ A+L Q E+G+ A+AH P +LVYYAAHDTNLLYLAELL LKW+S G+QPNHTPPGG LVFEA+ N +A +FDI TP Q
Sbjct: 104 ENMPRDEKTAEAFFKGL--------------GCALPPLHSEGVEYLIDQGSKPRGENGQCALGTQAQVEGRVGGSVDGYLRLYKPLLAKLSELLGCCAKSLCPAGM---ESCSLEDLPGSWDPAHWYTTFSGPIYAGKYFAEWIELTMLNGMDFAWGKLSVEEVMELSAFVTQYRAFEFDLLAARPFGSALLSHIAASLTQWESGQREPALAHDPSPRLVYYAAHDTNLLYLAELLGLKWLSHGYQPNHTPPGGALVFEAFGPANPANPLDEWQIALYFDIQTPLQ 372
BLAST of mRNA_Ecto-sp13_S_contig1555.4130.1 vs. uniprot
Match: R1FLM4_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FLM4_EMIHU) HSP 1 Score: 334 bits (857), Expect = 1.450e-105 Identity = 167/286 (58.39%), Postives = 203/286 (70.98%), Query Frame = 2
Query: 665 QDMPRDEFTAEAFFKGFTEGWTAAGGDATVGSCPVPEPHFEEVEYLIDQGSKPRGDAGQCRLGSEQEVQGVVG-KVDEWTRLLRSKLQKLNDVLGCCDRSLCPADHPEDQPCTLMDMPHVWDEEHWYVTFTGPVYAGKYFSEWFLLNYLNGMDVAWGELSEEDVMDLAAFVTEYRHFEFDLLAARPFGSALLMHVVAALDQMETGENLDAVAHTPDVKLVYYAAHDTNLLYLAELLDLKWVSKGWQPNHTPPGGELVFEAYMVDGELN------VAAFFDIATPGQ 1501
++MPRDE TAEAFFKG C +P H E VEYLIDQGSKPRG+ GQC LG++ +V+G VG VD + RL + L KL+++LGCC +SLCPA + C+L D+P WD HWY TF+GP+YAGKYF+EW L LNGMD AWG+LS E+VM+ +AFVT+YR FEFDLLAARPFGSALL H+ A+L Q E+G+ A+AH P +LVYYAAHDTNLLYLAELL LKW+S G+QPNHTPPGG LVFEA+ N +A +FDI TP Q
Sbjct: 109 ENMPRDEKTAEAFFKGL--------------GCALPPLHSEGVEYLIDQGSKPRGENGQCALGTQAQVEGRVGGSVDGYLRLYKPLLAKLSELLGCCAKSLCPAGM---ESCSLEDLPGSWDPAHWYTTFSGPIYAGKYFAEWIELTMLNGMDFAWGKLSVEEVMEFSAFVTQYRAFEFDLLAARPFGSALLSHIAASLTQWESGQREPALAHDPSPRLVYYAAHDTNLLYLAELLGLKWLSHGYQPNHTPPGGALVFEAFGPANPANPLDEWQIALYFDIQTPLQ 377
BLAST of mRNA_Ecto-sp13_S_contig1555.4130.1 vs. uniprot
Match: A0A7S3SNZ1_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3SNZ1_EMIHU) HSP 1 Score: 325 bits (834), Expect = 5.590e-104 Identity = 164/280 (58.57%), Postives = 198/280 (70.71%), Query Frame = 2
Query: 683 EFTAEAFFKGFTEGWTAAGGDATVGSCPVPEPHFEEVEYLIDQGSKPRGDAGQCRLGSEQEVQGVVG-KVDEWTRLLRSKLQKLNDVLGCCDRSLCPADHPEDQPCTLMDMPHVWDEEHWYVTFTGPVYAGKYFSEWFLLNYLNGMDVAWGELSEEDVMDLAAFVTEYRHFEFDLLAARPFGSALLMHVVAALDQMETGENLDAVAHTPDVKLVYYAAHDTNLLYLAELLDLKWVSKGWQPNHTPPGGELVFEAYMVDGELN------VAAFFDIATPGQ 1501
E TAEAFFKG C +P H E VEYLIDQGSKPRG+ GQC LG++ +V+G VG VD + RL + L KL+++LGCC +SLCPA + C+L D+P WD HWY TF+GP+YAGKYF+EW L LNGMD AWG+LS E+VM+L+AFVT+YR FEFDLLAARPFGSALL H+ A+L Q E+G+ A+AH P +LVYYAAHDTNLLYLAELL LKW+S G+QPNHTPPGG LVFEA+ N +A +FDI TP Q
Sbjct: 1 EKTAEAFFKGL--------------GCALPPLHSEGVEYLIDQGSKPRGENGQCALGTQAQVEGRVGGSVDGYLRLYKPLLAKLSELLGCCAKSLCPAGM---ESCSLEDLPGSWDPAHWYTTFSGPIYAGKYFAEWIELTMLNGMDFAWGKLSVEEVMELSAFVTQYRAFEFDLLAARPFGSALLSHIAASLTQWESGQREPALAHDPSPRLVYYAAHDTNLLYLAELLGLKWLSHGYQPNHTPPGGALVFEAFGPANPANPLDEWQIALYFDIQTPLQ 263
BLAST of mRNA_Ecto-sp13_S_contig1555.4130.1 vs. uniprot
Match: A0A7S0ECG0_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0ECG0_9EUKA) HSP 1 Score: 323 bits (828), Expect = 3.480e-101 Identity = 164/298 (55.03%), Postives = 202/298 (67.79%), Query Frame = 2
Query: 632 LPVCPSISCHLQD-MPRDEFTAEAFFKGFTEGWTAAGGDATVGSCPVPEPHFEEVEYLIDQGSKPRGDAGQCRLGSEQEVQGVVG-KVDEWTRLLRSKLQKLNDVLGCCDRSLCPADHPEDQPCTLMDMPHVWDEEHWYVTFTGPVYAGKYFSEWFLLNYLNGMDVAWGELSEEDVMDLAAFVTEYRHFEFDLLAARPFGSALLMHVVAALDQMETGENLDAVAHTPDVKLVYYAAHDTNLLYLAELLDLKWVSKGWQPNHTPPGGELVFEAYMVD------GELNVAAFFDIATPGQ 1501
+P C + ++ MPRD TAEAFFKG +G P H E EYLIDQGS PRGD G+C LG++ +V+G VG VDE+ RL +++KL+++LGCCD SLC P C+L D+P +D++HWY TF+GP+YAGKYF+EW L LNGMD AWG+L+ E+VM+L+AFVT+YR FEFD+LAARPFGSALL HV A L Q G AV H +LVYYAAHDTNLLYLAELL+LKW++KGWQPNHTPPGG LV EA GE +A FFD+ TP Q
Sbjct: 109 VPGCRGAYVYCEEKMPRDAKTAEAFFKG-------------MGCETTPALHSEGAEYLIDQGSTPRGDQGECALGTQAQVEGRVGGSVDEYLRLYMPRIRKLSELLGCCDASLCGK--PAGSSCSLEDLPSAFDQKHWYTTFSGPMYAGKYFAEWIELTMLNGMDFAWGKLTVEEVMELSAFVTQYRAFEFDMLAARPFGSALLAHVGATLQQWAGGAAQPAVTHAASERLVYYAAHDTNLLYLAELLELKWLAKGWQPNHTPPGGMLVVEALAPTNDANPTGEWQLAVFFDVQTPQQ 391
BLAST of mRNA_Ecto-sp13_S_contig1555.4130.1 vs. uniprot
Match: A0A7S0J047_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J047_9EUKA) HSP 1 Score: 142 bits (359), Expect = 3.890e-37 Identity = 69/121 (57.02%), Postives = 82/121 (67.77%), Query Frame = 2
Query: 923 QKLNDVLGCCDRSLCPADHPEDQPCTLMDMPHVWDE--EHWYVTFTGPVYAGKYFSEWFLLNYLNGMDVAWGELSEEDVMDLAAFVTEYRHFEFDLLAARPFGSALLMHVVAALDQMETGE 1279
+KL D LGCC LC D PC L + WD +HWY TF GP+YAGKYF+EWF L LNGM+ A+G L+ +VM+L AFVT YR FEFD LAARPFGS LLMH++A L Q +GE
Sbjct: 6 RKLGDALGCCAPELCDGIDGGDGPCALERLRTEWDPNPKHWYTTFLGPLYAGKYFAEWFELTMLNGMEYAFGSLTPAEVMELTAFVTAYRAFEFDALAARPFGSTLLMHILATLRQWASGE 126
BLAST of mRNA_Ecto-sp13_S_contig1555.4130.1 vs. uniprot
Match: A0A1V9YF74_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YF74_9STRA) HSP 1 Score: 130 bits (327), Expect = 4.300e-29 Identity = 92/310 (29.68%), Postives = 136/310 (43.87%), Query Frame = 2
Query: 638 VCPSISCHLQDMPRDEFTAEAFFKGFTEGWTAAGGDATVGSCPVPEPHFEEVEYLIDQGSKPRGDAGQCRLGSEQEVQGVVGKV--DEWTRLLRSKLQKLNDVLGCCDRSLCPADHPED-----QPCTLMDMPHVWDEEHWYVTFTGPVYAGKYFSEWFLLNYLNGMDVAWGELSEEDVMDLAAFVTEYRHFEFDLLAARPFGSALLMHVVAALDQMETGENLDA-------VAHTPDVKLVYYAAHDTNLLYLAELLDLKWVSKGWQPNHTPPGGELVFEAYMVDG--------ELNVAAFFDIATPGQ 1501
C + D RD TA+AF GF +C +P L +QG P C S+ G+VG V D R L ++Q+LNDV+ CC +C A C L +P W + +Y ++ +Y SEWFLL LN M + + + ED+++L A + + A FGS LL+H+VA++D+ T + + H + +YYA HD NLLYL LL ++W + W N PG L+FE + +G + V A+F A+P Q
Sbjct: 105 TCTKTFAYADDNERDIDTAQAFLDGFLPP-----------ACAGVKPDTTGARLLFEQGQDP---TAICPATSQTLYHGIVGNVTADNIIRHLAPEIQELNDVVDCCKPEVCTATSARSLLAQASTCNLFTVPSTWSGK-FYEPWSDAFSEAQYLSEWFLLQSLNNMTLPPSK-TLEDMIELGAVHNAHIQLITNQFNAENFGSTLLVHLVASMDEAITQRPVPIAPGTGPHLLHDIASRFLYYAGHDINLLYLKNLLRMEWDTNNWNANQPNPGSMLLFEVHADEGKETSTSVEDFFVQAYFVAASPKQ 398
BLAST of mRNA_Ecto-sp13_S_contig1555.4130.1 vs. uniprot
Match: A0A329SVH3_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SVH3_9STRA) HSP 1 Score: 129 bits (324), Expect = 2.070e-28 Identity = 89/296 (30.07%), Postives = 136/296 (45.95%), Query Frame = 2
Query: 638 VCPSISCHLQDMPRDEFTAEAFFKGFTEGWTAAGGDATVGSCPVPEPHFEEVEYLIDQGSKPRGDAGQCRLGSEQEVQGVVGKVDEWTRL--LRSKLQKLNDVLGCCDRSLCPADHPEDQP-----------CTLMDMPHVWDEEHWYVTFTGPVYAGKYFSEWFLLNYLNGMDVAWGELSEEDVMDLAAFVTEYRHFEFDLLAARPFGSALLMHVVAALDQMETGENLDA-------VAHTPDVKLVYYAAHDTNLLYLAELLDLKWVSKGWQPNHTPPGGELVFEAYMVDGELN 1465
C + + RD TA AF G C P +E + L +QG P D C + S+ +G+ G D L +R ++ ++ND+L CC S+C D D+P C L +P W+ +Y+ + + YFSEW LL LN M + +LS E ++ LA + + + + FG+ LL H+ A+ +Q + L + P+ +L+YYAAHD NLLY+ LL L+W +KGW+P+ PGG LVFE + + N
Sbjct: 121 ACEETFAYADNNQRDNLTAVAFLSGLYP------------LCKELVPITKETQLLFEQGQDPTAD---CPVCSKAVYEGITGSNDTSFVLQEIREEVAEVNDLLQCCAASVCSID---DEPANSDLIESSATCDLFGIPTQWNGA-FYLPWKDTLSNADYFSEWLLLQSLNNMSLP-SQLSFEKILSLAKIHETHMDLITNEVNSANFGATLLAHLTASFEQNIMQKPLPVAKGEGPHLLQGPENRLLYYAAHDINLLYVRNLLRLQWYTKGWRPHQPVPGGMLVFELHATPTKGN 396
BLAST of mRNA_Ecto-sp13_S_contig1555.4130.1 vs. uniprot
Match: A0A081AR47_PHYPR (Uncharacterized protein n=1 Tax=Phytophthora parasitica P1976 TaxID=1317066 RepID=A0A081AR47_PHYPR) HSP 1 Score: 126 bits (317), Expect = 4.530e-28 Identity = 87/294 (29.59%), Postives = 132/294 (44.90%), Query Frame = 2
Query: 638 VCPSISCHLQDMPRDEFTAEAFFKGFTEGWTAAGGDATVGSCPVPEPHFEEVEYLIDQGSKPRGDAGQCRLGSEQEVQGVVGKVDEWTRLLRSKLQK----LNDVLGCCDRSLCPADHP-------EDQPCTLMDMPHVWDEEHWYVTFTGPVYAGKYFSEWFLLNYLNGMDVAWGELSEEDVMDLAAFVTEYRHFEFDLLAARPFGSALLMHVVAALDQMETGENLDA-------VAHTPDVKLVYYAAHDTNLLYLAELLDLKWVSKGWQPNHTPPGGELVFEAYMVDGELN 1465
C + + RD TA AF G C P +E + L +QG P C + S +G+ G D TR + ++Q+ +N++L CC S+C D E C L +P W+ +Y+ + + YFSEW LL LN M + +LS E ++ LA + + + + FG+ LL H+ A+ +Q + L + P+ +L+YYAAHD NLLY+ LL L+W +KGW P+ PGG LVFE + + N
Sbjct: 96 ACEETFAYADNNQRDNLTALAFLNGLYP------------LCTELVPITKETQSLFEQGQDP---TANCPVCSRAVYEGITGSND--TRFVLQEIQEEVAEVNELLQCCAASVCSTDEEPEKSDSTESATCDLFGIPTQWNGA-FYLPWKDTLSNADYFSEWLLLQSLNNMSLP-SQLSFEKILSLARIHETHMDLITNEVNSANFGATLLAHLTASFEQNIMQKPLPVAKGEGPHLLQGPENRLLYYAAHDINLLYVRNLLRLQWHTKGWHPHQPVPGGMLVFELHATPTKSN 370 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1555.4130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1555.4130.1 >prot_Ecto-sp13_S_contig1555.4130.1 ID=prot_Ecto-sp13_S_contig1555.4130.1|Name=mRNA_Ecto-sp13_S_contig1555.4130.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=277bp MPRDEFTAEAFFKGFTEGWTAAGGDATVGSCPVPEPHFEEVEYLIDQGSKback to top mRNA from alignment at Ecto-sp13_S_contig1555:10900..16659+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1555.4130.1 ID=mRNA_Ecto-sp13_S_contig1555.4130.1|Name=mRNA_Ecto-sp13_S_contig1555.4130.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5760bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1555:10900..16659+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1555:10900..16659+ >mRNA_Ecto-sp13_S_contig1555.4130.1 ID=mRNA_Ecto-sp13_S_contig1555.4130.1|Name=mRNA_Ecto-sp13_S_contig1555.4130.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=831bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1555:10900..16659+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |