mRNA_Ecto-sp13_S_contig15548.4126.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15548.4126.1
Unique NamemRNA_Ecto-sp13_S_contig15548.4126.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15548.4126.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 450 bits (1157), Expect = 2.200e-142
Identity = 247/371 (66.58%), Postives = 282/371 (76.01%), Query Frame = 3
Query:  279 IVSSQFHLEHQAHRPMQHIAKKLKDDHVIPLEELEKWADDIEKMTLSGVLPFTMYRCIADSIRPRKLGTLGVQKVRSMSDKISRGHGHRGRRS*SRC*SRKGTNDGEVG-------TQHHHVLRSIMLASPKQIILARTNGGVVIQDNTCLTNRCVDVKLSLFMGVNSENKTVIFAQGFLSNEQNSLFDFANRFLLEICGGHPKHPIVCTTCCPLPH---VIINDAGAAMTSPIAELMPHAKHLYCSWHISKNLKRKCGGKTFADVVKRYTAESFATSMKAFERTWNQLKEVVKGTPCEGYINGYLYEG--HW----HAATMILGMRASQRVEASFSAIKNGSAVRKHSTFCAVKKRVDTVAEDLAVASRM 1343
            +   + +LEH A   MQH+AKK KDD V+PLEELEKWADDI+ MTL GV PFTMYRCI ++I+PRKLGT GV+KVR+MSDK+SRG      R  S+  + +   D E G       +  +HVLRSIM ASP+QI+LART GG+VIQDNTCL NR  D KL LF+GV+SENKT IFAQG LSNEQ S FDFANRFLLEI GG   H ++ T   P PH   VII DA AAMTS +AELMPH KHLY SWHISKNLKRKCGG+ FADV++RYTA SFATSMKAFER WN LKEVV+GTPCE YINGYL++   HW    H  TM LGM ASQRVE SFS IKNG AVRK+STF AV+KRV+TVAEDLA+ASRM
Sbjct:  721 VRGKKVNLEHHADCEMQHVAKKHKDDSVVPLEELEKWADDIKSMTLGGVRPFTMYRCIGENIKPRKLGTRGVRKVRNMSDKVSRG------RWASKTDALELVADLERGPATVKWESDANHVLRSIMWASPEQIMLARTYGGIVIQDNTCLINR-YDFKLCLFVGVDSENKTGIFAQGLLSNEQISSFDFANRFLLEIRGGTQSHHLLPTP--PTPHPPQVIITDADAAMTSSVAELMPHTKHLYSSWHISKNLKRKCGGEVFADVIRRYTAASFATSMKAFERIWNNLKEVVEGTPCEEYINGYLFDQRKHWARCCHPTTMTLGMTASQRVEGSFSVIKNGGAVRKNSTFGAVRKRVETVAEDLALASRM 1082          
BLAST of mRNA_Ecto-sp13_S_contig15548.4126.1 vs. uniprot
Match: D7FLF6_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF6_ECTSI)

HSP 1 Score: 264 bits (675), Expect = 2.110e-78
Identity = 152/318 (47.80%), Postives = 200/318 (62.89%), Query Frame = 3
Query:  438 MYRCIADSIRPRKLGTLGVQKVRSMSDKISRGHGHRGRRS*SR----C*SRKGTNDGEVGTQHHHVLRSIMLASPKQIILARTNGGVVIQDNTCLTNRCVDVKLSLFMGVNSENKTVIFAQGFLSNEQNSLFDFANRFLLEICGGHPKHPIVCTTCCPLPHVIINDAGAAMTSPIAELMP--HAKHLYCSWHISKNLKRKC----GGKTFADVVKRYTAESFATSMKAFERTWNQLKEVVKGTPCEGYINGYLYEG--HW----HAATMILGMRASQRVEASFSAIKNGSAVRKHSTFCAVKKRVDTVAEDLAVASRM 1343
            MYRCIA+SI+P+KLG  G +KVR+MS K++   G     S           +G    +      ++LRSIM ASP+QI+LART GGVVIQDNTCLTNR  + KL LF+GV+SENKT +FAQGF SNE    FDFAN+F L+ICGGHPK             VII D+ AAM   I  + P  H  HL CSWHI KN+K+KC      +  AD+++R+T  S ATS++AF+  W  ++++VKGT CE YI  +LYE   HW    H   M L M +SQRVE +FS +K G  +R++STF  V+ + + +A +L +AS M
Sbjct:    1 MYRCIAESIKPQKLGPRGARKVRNMSRKVT---GELWASSGDALELVAELERGNETVKWELDAENILRSIMWASPEQILLARTYGGVVIQDNTCLTNR-YNNKLCLFVGVDSENKTQVFAQGFFSNESTEAFDFANKFFLDICGGHPK-------------VIITDSDAAMKESIRGVFPPPHTTHLLCSWHICKNIKKKCLSILKSEKCADLLRRWTRASLATSIEAFDGVWTDVEDLVKGTDCEEYILKFLYERRKHWARCFHPTVMTLDMTSSQRVEGTFSVLKKGRVLRRNSTFRQVRAKCEQIAGELRLASTM 301          
BLAST of mRNA_Ecto-sp13_S_contig15548.4126.1 vs. uniprot
Match: A0A6H5JEJ0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ0_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 3.610e-42
Identity = 121/382 (31.68%), Postives = 183/382 (47.91%), Query Frame = 3
Query:  360 VIPLEELE-KWADDIEKMTLSGVLPFTMYRCIADSIRPRKLGTLGVQKVR--------SMSDKISRGHGHRGRRS*SRC*SRKGTNDGEVGTQHHHVLRSIMLASPKQIILARTNGGVVIQDNTCLTNRCVDV--------KLS---------------------------LFMGVNSENKTVIFAQGFLSNEQNSLFDFANRFLLEICGGHPKHPIVCTTCCPLPHVIINDAGAAMTSPIAELMPHAK-HLYCSWHISKNLKRKCG---GKTFADVVKRYTAESFATSMKAFERTWNQLKEVVKGTPCEGYINGYLYEGHWH------AATMILGMRASQRVEASFSAIKNGSAVRKHSTFCAVKKRVDTVAEDLAVASRM 1343
            ++P E+LE ++  DI + TL+G+  F MYR I++ ++P +LG  G QKV+           D +S      G      C  +  T DG       H L+ +  ++ +Q + AR  GG+V+QDNT LTNR + +        K+S                           LF+GV+SENKTV+FAQGF S++ +  + +A +    ICGG P+             VII DA A MT  +   +P    HLYC WH+ KN+++ C    GK  +   +   A +FA + +A    W+++   VKG+ CE Y+ G+L   H H        TM L M A+QRVE  FS +K G  V +  +   VK  ++       +AS +
Sbjct:    1 MVPGEDLEARFKGDIRRWTLAGLKQFDMYRLISELVKPLQLGEPGRQKVQRECWSTPTDALDLVSELKDMAG------CYVKYDT-DGL------HRLKHVFWSTGQQQVFARQWGGIVLQDNTALTNRVLVLIRLIFATGKMSDEHPVRLRFIQPRAFASRSCRYGMHFMLFIGVDSENKTVVFAQGFFSDQSSDTYQWALKHYCTICGGQPE-------------VIITDADAGMTHAVETFLPSTTVHLYCLWHVMKNVRKNCARALGKKASRFYRLLHAAAFAATEEACSDAWSEIFRHVKGSDCEEYVTGHLLRHHRHWSRCFFPTTMTLNMTATQRVEGMFSVLKKGRIVNRRCSLVRVKAELEKRIAGFTLASNL 356          
BLAST of mRNA_Ecto-sp13_S_contig15548.4126.1 vs. uniprot
Match: A0A6H5KG54_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG54_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.310e-14
Identity = 71/279 (25.45%), Postives = 112/279 (40.14%), Query Frame = 3
Query:  624 LRSIMLASPKQIILARTNGGVVIQDNTCLTNRCVDVKLSLFMGVNSENKTVIFAQGFLSNEQNSLFDFANRFLLEICGGHPKHPIVCTTCCPLPHVIINDAGAAMTSPIAELMPHAKHLYCSWHISKNLKRKCGG---------------------------------------KTFADVVKRYTAESFATS------------MKAFERTWNQLKEVVKGTPCEGYI-NGYLYEGHW----HAATMILGMRASQRVEASFSAIKNGSAVRKHSTFCAV 1292
            L ++  A+  Q   A   GG +  D T   NR     + LF+GV+ EN++ I  QG L +E    F++         GG  + P           VI+ DA  AMTS +  +    +HL+C WH++KNL +KC G                                          +D +  Y  +++                +AF  +  Q++++  GT CE Y+ N +  +  W       T+ LGM A+QRVE  FS  K    +++ S  CA+
Sbjct:  289 LVNVFWATADQQERAARFGGCIQMDTTVFANR-YGCPVLLFVGVDDENRSCILGQGLLRSECAETFEWFLTQYESAAGGWERRP----------KVILTDADVAMTSAVPSVWKGTQHLFCLWHVNKNLVKKCAGALSDHDRTRMLRSFRSAAYAVNAEVRFEASSPAPGTLFRSKLSDCLGSYLIQTWPNMALPVATRHRCAYFQAFASSRGQMEQISTGTKCEEYVDNLFKNKSKWAFYCRTTTLALGMAATQRVEGLFSVAKRMGVIKQLS-LCAL 555          
BLAST of mRNA_Ecto-sp13_S_contig15548.4126.1 vs. uniprot
Match: A0A015IP45_RHIIW (Uncharacterized protein n=1 Tax=Rhizophagus irregularis (strain DAOM 197198w) TaxID=1432141 RepID=A0A015IP45_RHIIW)

HSP 1 Score: 73.6 bits (179), Expect = 3.050e-10
Identity = 64/245 (26.12%), Postives = 116/245 (47.35%), Query Frame = 3
Query:  606 TQHHHVLRSIMLASPKQIILARTNGGVVIQDNTCLTNRCVDVKLSLFMGVNSENKTVIFAQGFLSNEQNSLFDFANRFLLEICGGHPKHPIVCTTCCPLPHVIINDAGAAMTSPIAELMPHAKHLYCSWHISKN----LKRKCGGKTFADVVKRYTAESFATSMKAFERTWNQLKEVVKGTP-CEGYINGYLYEGH--WHAATMIL----GMRASQRVEASFSAIKNGSAVRKHSTFCAVKKRVD 1307
            T   + L  I   SP Q+ L R    +V+ DNTC TN+  ++ LS+FM  ++  +    A   + +E +S + +  + L++                 +P     D+   + + +A++ P+  H YC +HI +N    LK K G + F++  K + A   A  ++ FE+ W   K ++K  P C+ Y+   LY     W  A M      G++++Q VE+  + IK   ++   ST C V++ ++
Sbjct:   78 TGSENRLSGIFWMSPSQLELYRRFSDIVLNDNTCKTNK-YNMYLSVFMIKDNYGRFRNVANALIEDELSSTYTWILQCLVKATDNI------------IPKSFWTDSEPGLINAVAQVFPNTPHFYCMFHIWQNIIKHLKSKLG-ENFSNFSKAFYACRNALCIEIFEQRW---KFMIKSFPNCKRYMTRTLYNNRISWAKAYMPFQFNGGIQSTQSVESFNNIIKR--SLNSTSTLCEVEEAIN 303          
BLAST of mRNA_Ecto-sp13_S_contig15548.4126.1 vs. uniprot
Match: A0A0K9Q4I4_ZOSMR (Protein FAR1-RELATED SEQUENCE n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9Q4I4_ZOSMR)

HSP 1 Score: 73.6 bits (179), Expect = 3.280e-10
Identity = 62/225 (27.56%), Postives = 96/225 (42.67%), Query Frame = 3
Query:  624 LRSIMLASPKQIILARTNGGVVIQDNTCLTNRCVDVKLSLFMGVNSENKTVIFAQGFLSNEQNSLFDFANRFLLEICGGHPKHPIVCTTCCPLPHVIINDAGAAMTSPIAELMPHAKHLYCSWHISKNLKRKCGGK-TFADVVKRY-----TAE----------SFATSMKAFERTWNQLKEVVKGTPCEGYINGYLYEGHWHAATMILGMRASQRVEASFSAIK 1250
            L+ +  A PK I   +  G  +  D T  TN+   + + +F GVN+  +TV+FA GFLSNE    F +      +  G +PK              II D  AAM + I+   P   H  C WHI+  +  K G      D ++R+     T+E          S+AT  K  E  W +    ++ + C  Y+  + + G          M+++QR E   S +K
Sbjct:  287 LKQLFWADPKCIEEYKQYGEAITFDTTYNTNK-YKLIIGIFCGVNNHMRTVLFANGFLSNESTESFIWLFSEFKKCMGNYPK-------------TIITDQDAAMKTAISSEFPTTFHRLCKWHITHKMCDKVGTVYRNKDEMERFNKILNTSENINEFEKNWSSWATDNKLTENKWLKDMYTIRESWCPIYMTNHFFGG----------MQSTQRSEGMNSLVK 487          
BLAST of mRNA_Ecto-sp13_S_contig15548.4126.1 vs. uniprot
Match: UPI000901D02A (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI000901D02A)

HSP 1 Score: 70.5 bits (171), Expect = 2.220e-9
Identity = 58/210 (27.62%), Postives = 95/210 (45.24%), Query Frame = 3
Query:  678 GGVVIQDNTCLTNRCVDVKLSLFMGVNSENKTVIFAQGFLSNEQNSLFDFA-NRFLLEICGGHPKHPIVCTTCCPLPHVIINDAGAAMTSPIAELMPHAKHLYCSWHIS----KNLKRKCGGKTFADVVKRYTAESFATSMKAFERTWNQLKEVVKGTPCEGYINGYLYEGHW---HAATMILG-MRASQRVEASFSAIKNGSAVRKHST 1280
            G +++ D T  TN+  D+    F+G+N  NK V+F  GF+ NE+   F +  N FL  + G   KHP+           I+ D  A+M   I E+ P+++   C+WHI     KN+K+      F D+    T   +  ++  F   W+ + E       +   + Y+ +  W   H+     G + +SQR E +  +I      R HST
Sbjct:  265 GDLLVHDTTYRTNK-YDMICGPFVGMNHNNKNVMFGIGFILNEKTVSFIWLFNTFLKSMSG---KHPVT----------IMTDQSASMAKAIREVFPNSRQRLCTWHIGENSKKNIKKLRAMDGFTDLFN--TVLKYTYTIAGFNYYWSSMVEKYNCAEVKWIQDLYVIKDLWCPAHSKDYFSGGILSSQRSETTNKSISR----RLHST 454          
BLAST of mRNA_Ecto-sp13_S_contig15548.4126.1 vs. uniprot
Match: UPI00053FFEC4 (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FFEC4)

HSP 1 Score: 66.6 bits (161), Expect = 1.760e-8
Identity = 37/113 (32.74%), Postives = 59/113 (52.21%), Query Frame = 3
Query:  678 GGVVIQDNTCLTNRCVDVKLSLFMGVNSENKTVIFAQGFLSNEQNSLFDFANRFLLEICGGHPKHPIVCTTCCPLPHVIINDAGAAMTSPIAELMPHAKHLYCSWHISKNLKR 1016
            G +++ D T  TN+  D+    F+G+N  NK V+F  GF+ NE+   F +     L+  GG  KHP+           I+ D  A+M   I E+ P+++   C+WHI +N K+
Sbjct:  178 GDLLVHDTTYRTNK-YDMICGPFVGMNHNNKNVMFGIGFILNEKAVSFIWLFNTFLKSMGG--KHPVT----------IMTDQSASMAKAIREVFPNSRQRLCTWHIGENSKK 277          
BLAST of mRNA_Ecto-sp13_S_contig15548.4126.1 vs. uniprot
Match: A0A6H5JP13_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP13_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 4.040e-8
Identity = 52/193 (26.94%), Postives = 80/193 (41.45%), Query Frame = 3
Query:  909 VIINDAGAAMTSPIAELMPHAKHLYCSWHISKNLKRKCGG---------------------------------------KTFADVVKRYTAESFATS------------MKAFERTWNQLKEVVKGTPCEGYI-NGYLYEGHW----HAATMILGMRASQRVEASFSAIKNGSAVRKHSTFCA---VKKRVDT 1310
            VI+ DA  AMTS +A +    +HL+C WH++KNL +KC G                                          +D +  Y  +++                +AF  +  Q++++  GT CE Y+ N +  +  W       T+ LGM A+QRVE  FS  K  + V K  + CA   V +RV+T
Sbjct:   11 VILTDADVAMTSAVASVWKGTQHLFCLWHVNKNLVKKCAGALSDHDRTRMLRSFRSAAYAVNAEVRFEASSPAPGTLFRSKLSDCLGSYLIQTWPNMALPVATRHRCAYFQAFASSRGQMEQISAGTKCEEYVDNLFKNKSKWAFYCRTTTLALGMAATQRVEGLFSVAKR-TGVIKQLSLCALWDVLRRVET 202          
BLAST of mRNA_Ecto-sp13_S_contig15548.4126.1 vs. uniprot
Match: A0A6A3CN33_HIBSY (Protein FAR1-RELATED SEQUENCE n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3CN33_HIBSY)

HSP 1 Score: 66.2 bits (160), Expect = 5.040e-8
Identity = 36/133 (27.07%), Postives = 62/133 (46.62%), Query Frame = 3
Query:  681 GVVIQDNTCLTNRCVDVKLSLFMGVNSENKTVIFAQGFLSNEQNSLFDFANRFLLEICGGHPKHPIVCTTCCPLPHVIINDAGAAMTSPIAELMPHAKHLYCSWHISKNLKRKCGGKTFADVVKRYTAESFAT 1079
            G VI  +T   +    + +   +GVN+ + T++FA   +++E +  F++  +  LE      K PI           ++ D   AM   I  ++P+AKH+ CSWH+S+N +   G   F     RY    + T
Sbjct:  185 GDVIAFDTTYKDNMYGLPIMPIVGVNNHHNTIVFATTIIADEMSQSFEWVLKNFLEAMMN--KSPIS----------VVTDGDRAMQRAIKSVIPYAKHILCSWHLSRNAQANIGDPKFTAAFSRYMTSKWTT 305          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15548.4126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K454_9PHAE2.200e-14266.58SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FLF6_ECTSI2.110e-7847.80Putative far-red impaired response protein n=1 Tax... [more]
A0A6H5JEJ0_9PHAE3.610e-4231.68SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KG54_9PHAE1.310e-1425.45SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A015IP45_RHIIW3.050e-1026.12Uncharacterized protein n=1 Tax=Rhizophagus irregu... [more]
A0A0K9Q4I4_ZOSMR3.280e-1027.56Protein FAR1-RELATED SEQUENCE n=1 Tax=Zostera mari... [more]
UPI000901D02A2.220e-927.62protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Beta ... [more]
UPI00053FFEC41.760e-832.74protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Beta ... [more]
A0A6H5JP13_9PHAE4.040e-826.94SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6A3CN33_HIBSY5.040e-827.07Protein FAR1-RELATED SEQUENCE n=1 Tax=Hibiscus syr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15548contigEcto-sp13_S_contig15548:1965..4040 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score233.8
Seed ortholog evalue8.3e-59
Seed eggNOG ortholog2880.D7FLF6
Model size1343
Hectar predicted targeting categoryother localisation
Exons6
EggNOG OGs2CMGX@1,2QQB8@2759
Cds size708
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15548.4126.1prot_Ecto-sp13_S_contig15548.4126.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15548 2817..4040 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462824.3383348-UTR-Ecto-sp13_S_contig15548:1964..24641681462824.3383348-UTR-Ecto-sp13_S_contig15548:1964..2464Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15548 1965..2464 +
1681462824.3501282-UTR-Ecto-sp13_S_contig15548:2681..28161681462824.3501282-UTR-Ecto-sp13_S_contig15548:2681..2816Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15548 2682..2816 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462824.3587086-CDS-Ecto-sp13_S_contig15548:2816..29031681462824.3587086-CDS-Ecto-sp13_S_contig15548:2816..2903Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15548 2817..2903 +
1681462824.367357-CDS-Ecto-sp13_S_contig15548:3001..31481681462824.367357-CDS-Ecto-sp13_S_contig15548:3001..3148Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15548 3002..3148 +
1681462824.3771327-CDS-Ecto-sp13_S_contig15548:3336..35551681462824.3771327-CDS-Ecto-sp13_S_contig15548:3336..3555Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15548 3337..3555 +
1681462824.386963-CDS-Ecto-sp13_S_contig15548:3656..37431681462824.386963-CDS-Ecto-sp13_S_contig15548:3656..3743Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15548 3657..3743 +
1681462824.3968983-CDS-Ecto-sp13_S_contig15548:3872..40401681462824.3968983-CDS-Ecto-sp13_S_contig15548:3872..4040Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15548 3873..4040 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15548.4126.1

>prot_Ecto-sp13_S_contig15548.4126.1 ID=prot_Ecto-sp13_S_contig15548.4126.1|Name=mRNA_Ecto-sp13_S_contig15548.4126.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=236bp
MLASPKQIILARTNGGVVIQDNTCLTNRCVDVKLSLFMGVNSENKTVIFA
QGFLSNEQNSLFDFANRFLLEICGGHPKHPIVCTTCCPLPHVIINDAGAA
MTSPIAELMPHAKHLYCSWHISKNLKRKCGGKTFADVVKRYTAESFATSM
KAFERTWNQLKEVVKGTPCEGYINGYLYEGHWHAATMILGMRASQRVEAS
FSAIKNGSAVRKHSTFCAVKKRVDTVAEDLAVASRM
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mRNA from alignment at Ecto-sp13_S_contig15548:1965..4040+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15548.4126.1 ID=mRNA_Ecto-sp13_S_contig15548.4126.1|Name=mRNA_Ecto-sp13_S_contig15548.4126.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2076bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15548:1965..4040+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCAACGATCCAAACGGTAACGGCTTCGATCAACCTGCAACCGCGTTACT ATAGTCATCTTTGGTGCCAAGACATTCTCGTCGATTGCTTTGCCAAGGCC TTTCCTCGAAGTAGGCGCCAAACAAGAAGTGAAAAAACAGACTCAACGGT CATCCGGAGTCGGTGTCATTTCTTGGTCGGATATGATAGTATCAAAGTAC CATCGAGGTGCGTTATTGTCAAAACCAAGTGGAGCGTGCAACGGTAAAAT CTACAATGTGTTTTGTGACGGCAACCTCATCGTGTCTTCCCAGTTTCACC TTGAACACCAAGCTCACCGTCCGATGCAACATATTGCGAAGAAGCTCAAG GATGATCATGTAATACCGCTCGAAGAACTGGAAAAATGGGCGGATGACAT TGAAAAGATGACCTTAAGCGGTGTCCTACCTTTCACGATGTACCGCTGCA TCGCGGACAGCATAAGGCCCCGGAAGCTCGGCACGCTTGGTGTGCAAAAG GTGAATTTATGGTTGTGGAGACGGTGAACGGATTCGTTCCTCTGTGTCCT CGCCTGCTTGTGGTTTAAGTTGCCGGCGTGGTGTGATCAAAACGTAATGA TTGAAAGTTTCCATCCAATTCCGTTCCTCGTGAATGCCACGATATTGGCA CGTCTCGAGGCCTCCTATGTCCCCCCCGAACGTGCTCCATCTTTCGATAC TGTGCTTCACGTGTCAGGTGAGAAGCATGTCGGACAAGATATCACGGGGC CATGGGCATCGAGGGCGGCGGTCTTGATCTCGTTGCTGATCTAGAAAGGG AACAAACGACGGTGAAGTGGGAACCCAACACCACCACGTCTTGCGGTCCA TTATGTTGGCGTCGCCAAAACAAATCATTCTCGCTAGGACGAACGGTGGT GTTGTCATCCAGGACAACACGTGTCTTACTAACAGGTGCGTTGATCAGTG AGAGTGCTTGAAATGTCGAGAATCACCTCAGCGTTCGGCATTTGGCGGGA TTCACATGTTGACAGCACTTGTTGCCAACTGATGCAGGTCGACGTCAAGC TGAGTTTATTCATGGGTGTCAACTCGGAGAACAAGACAGTTATCTTCGCG CAAGGCTTCCTGAGCAACGAGCAGAATTCATTGTTCGATTTCGCAAACAG ATTTCTCCTCGAAATATGCGGTGGGCATCCAAAGGTGAGCTGTTCAGGTC TTGACTAGCAGTTCTCTCCGTAAAAAAAGCGTTGTAGCTGCGTTGTAGTT GAAATGCGCAACCGAATTGAATGCTGCATTTTATCTCGCCTTGGGGGACT TTCCGTGAAGATATTTCGCGTTGTAGTTGGAAGGTGCAACCGAACATCAC CTCGCGTGTTTTCTCGCCTTAGCATCCCATTGTCTGCACTACCTGCTGCC CCCTCCCCCACGTCATCATCAATGACGCCGGCGCTGCCATGACGAGTCCG ATCGCAGAACTAATGCCGCACGCCAAGCATTTGTACTGCTCGTGGCACAT CTCCAAGAACTTGAAGAGAAAGTGCGGGGGAAAGACATTTGCCGATGTAG TTAAGCGGTATACAGCGGAATCATTCGCAACGTCGATGAAGGTGGGTCAC AAACGTTGCCGTCCTCGCATCGGCCTTGGTATAACCTTGTGCCGAGTTTC CGCCTTGAGACTTACGTGGTACATTACCGACCCCGTCCTCAGGCATTCGA ACGCACATGGAATCAACTGAAGGAGGTTGTGAAGGGCACACCCTGCGAGG GGTACATCAACGGCTACCTATACGAGGGAGTGGACGGCTCCTTAAATATA CGGTGTGGGCGACCTTGTACAACTGCGGGCGAATGCGGTATGGTCGAGCC ACGTTCATTTTTCCTTCCGGCAACCCCCGATACCCCACGTTTCTCCAGTC AACGCCAGCACTGGCACGCTGCGACCATGATACTGGGCATGAGAGCCTCG CAGCGTGTGGAAGCCAGTTTCAGCGCTATTAAGAACGGCTCCGCCGTCAG GAAGCACTCCACCTTTTGCGCTGTGAAGAAGAGGGTGGATACTGTTGCTG AAGATCTCGCGGTGGCGTCGAGAATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15548:1965..4040+

>mRNA_Ecto-sp13_S_contig15548.4126.1 ID=mRNA_Ecto-sp13_S_contig15548.4126.1|Name=mRNA_Ecto-sp13_S_contig15548.4126.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=708bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15548:1965..4040+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTGGCGTCGCCAAAACAAATCATTCTCGCTAGGACGAACGGTGGTGT
TGTCATCCAGGACAACACGTGTCTTACTAACAGGTGCGTCGACGTCAAGC
TGAGTTTATTCATGGGTGTCAACTCGGAGAACAAGACAGTTATCTTCGCG
CAAGGCTTCCTGAGCAACGAGCAGAATTCATTGTTCGATTTCGCAAACAG
ATTTCTCCTCGAAATATGCGGTGGGCATCCAAAGCATCCCATTGTCTGCA
CTACCTGCTGCCCCCTCCCCCACGTCATCATCAATGACGCCGGCGCTGCC
ATGACGAGTCCGATCGCAGAACTAATGCCGCACGCCAAGCATTTGTACTG
CTCGTGGCACATCTCCAAGAACTTGAAGAGAAAGTGCGGGGGAAAGACAT
TTGCCGATGTAGTTAAGCGGTATACAGCGGAATCATTCGCAACGTCGATG
AAGGCATTCGAACGCACATGGAATCAACTGAAGGAGGTTGTGAAGGGCAC
ACCCTGCGAGGGGTACATCAACGGCTACCTATACGAGGGACACTGGCACG
CTGCGACCATGATACTGGGCATGAGAGCCTCGCAGCGTGTGGAAGCCAGT
TTCAGCGCTATTAAGAACGGCTCCGCCGTCAGGAAGCACTCCACCTTTTG
CGCTGTGAAGAAGAGGGTGGATACTGTTGCTGAAGATCTCGCGGTGGCGT
CGAGAATG
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