mRNA_Ecto-sp13_S_contig15548.4126.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig15548.4126.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE) HSP 1 Score: 450 bits (1157), Expect = 2.200e-142 Identity = 247/371 (66.58%), Postives = 282/371 (76.01%), Query Frame = 3
Query: 279 IVSSQFHLEHQAHRPMQHIAKKLKDDHVIPLEELEKWADDIEKMTLSGVLPFTMYRCIADSIRPRKLGTLGVQKVRSMSDKISRGHGHRGRRS*SRC*SRKGTNDGEVG-------TQHHHVLRSIMLASPKQIILARTNGGVVIQDNTCLTNRCVDVKLSLFMGVNSENKTVIFAQGFLSNEQNSLFDFANRFLLEICGGHPKHPIVCTTCCPLPH---VIINDAGAAMTSPIAELMPHAKHLYCSWHISKNLKRKCGGKTFADVVKRYTAESFATSMKAFERTWNQLKEVVKGTPCEGYINGYLYEG--HW----HAATMILGMRASQRVEASFSAIKNGSAVRKHSTFCAVKKRVDTVAEDLAVASRM 1343
+ + +LEH A MQH+AKK KDD V+PLEELEKWADDI+ MTL GV PFTMYRCI ++I+PRKLGT GV+KVR+MSDK+SRG R S+ + + D E G + +HVLRSIM ASP+QI+LART GG+VIQDNTCL NR D KL LF+GV+SENKT IFAQG LSNEQ S FDFANRFLLEI GG H ++ T P PH VII DA AAMTS +AELMPH KHLY SWHISKNLKRKCGG+ FADV++RYTA SFATSMKAFER WN LKEVV+GTPCE YINGYL++ HW H TM LGM ASQRVE SFS IKNG AVRK+STF AV+KRV+TVAEDLA+ASRM
Sbjct: 721 VRGKKVNLEHHADCEMQHVAKKHKDDSVVPLEELEKWADDIKSMTLGGVRPFTMYRCIGENIKPRKLGTRGVRKVRNMSDKVSRG------RWASKTDALELVADLERGPATVKWESDANHVLRSIMWASPEQIMLARTYGGIVIQDNTCLINR-YDFKLCLFVGVDSENKTGIFAQGLLSNEQISSFDFANRFLLEIRGGTQSHHLLPTP--PTPHPPQVIITDADAAMTSSVAELMPHTKHLYSSWHISKNLKRKCGGEVFADVIRRYTAASFATSMKAFERIWNNLKEVVEGTPCEEYINGYLFDQRKHWARCCHPTTMTLGMTASQRVEGSFSVIKNGGAVRKNSTFGAVRKRVETVAEDLALASRM 1082
BLAST of mRNA_Ecto-sp13_S_contig15548.4126.1 vs. uniprot
Match: D7FLF6_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF6_ECTSI) HSP 1 Score: 264 bits (675), Expect = 2.110e-78 Identity = 152/318 (47.80%), Postives = 200/318 (62.89%), Query Frame = 3
Query: 438 MYRCIADSIRPRKLGTLGVQKVRSMSDKISRGHGHRGRRS*SR----C*SRKGTNDGEVGTQHHHVLRSIMLASPKQIILARTNGGVVIQDNTCLTNRCVDVKLSLFMGVNSENKTVIFAQGFLSNEQNSLFDFANRFLLEICGGHPKHPIVCTTCCPLPHVIINDAGAAMTSPIAELMP--HAKHLYCSWHISKNLKRKC----GGKTFADVVKRYTAESFATSMKAFERTWNQLKEVVKGTPCEGYINGYLYEG--HW----HAATMILGMRASQRVEASFSAIKNGSAVRKHSTFCAVKKRVDTVAEDLAVASRM 1343
MYRCIA+SI+P+KLG G +KVR+MS K++ G S +G + ++LRSIM ASP+QI+LART GGVVIQDNTCLTNR + KL LF+GV+SENKT +FAQGF SNE FDFAN+F L+ICGGHPK VII D+ AAM I + P H HL CSWHI KN+K+KC + AD+++R+T S ATS++AF+ W ++++VKGT CE YI +LYE HW H M L M +SQRVE +FS +K G +R++STF V+ + + +A +L +AS M
Sbjct: 1 MYRCIAESIKPQKLGPRGARKVRNMSRKVT---GELWASSGDALELVAELERGNETVKWELDAENILRSIMWASPEQILLARTYGGVVIQDNTCLTNR-YNNKLCLFVGVDSENKTQVFAQGFFSNESTEAFDFANKFFLDICGGHPK-------------VIITDSDAAMKESIRGVFPPPHTTHLLCSWHICKNIKKKCLSILKSEKCADLLRRWTRASLATSIEAFDGVWTDVEDLVKGTDCEEYILKFLYERRKHWARCFHPTVMTLDMTSSQRVEGTFSVLKKGRVLRRNSTFRQVRAKCEQIAGELRLASTM 301
BLAST of mRNA_Ecto-sp13_S_contig15548.4126.1 vs. uniprot
Match: A0A6H5JEJ0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ0_9PHAE) HSP 1 Score: 168 bits (426), Expect = 3.610e-42 Identity = 121/382 (31.68%), Postives = 183/382 (47.91%), Query Frame = 3
Query: 360 VIPLEELE-KWADDIEKMTLSGVLPFTMYRCIADSIRPRKLGTLGVQKVR--------SMSDKISRGHGHRGRRS*SRC*SRKGTNDGEVGTQHHHVLRSIMLASPKQIILARTNGGVVIQDNTCLTNRCVDV--------KLS---------------------------LFMGVNSENKTVIFAQGFLSNEQNSLFDFANRFLLEICGGHPKHPIVCTTCCPLPHVIINDAGAAMTSPIAELMPHAK-HLYCSWHISKNLKRKCG---GKTFADVVKRYTAESFATSMKAFERTWNQLKEVVKGTPCEGYINGYLYEGHWH------AATMILGMRASQRVEASFSAIKNGSAVRKHSTFCAVKKRVDTVAEDLAVASRM 1343
++P E+LE ++ DI + TL+G+ F MYR I++ ++P +LG G QKV+ D +S G C + T DG H L+ + ++ +Q + AR GG+V+QDNT LTNR + + K+S LF+GV+SENKTV+FAQGF S++ + + +A + ICGG P+ VII DA A MT + +P HLYC WH+ KN+++ C GK + + A +FA + +A W+++ VKG+ CE Y+ G+L H H TM L M A+QRVE FS +K G V + + VK ++ +AS +
Sbjct: 1 MVPGEDLEARFKGDIRRWTLAGLKQFDMYRLISELVKPLQLGEPGRQKVQRECWSTPTDALDLVSELKDMAG------CYVKYDT-DGL------HRLKHVFWSTGQQQVFARQWGGIVLQDNTALTNRVLVLIRLIFATGKMSDEHPVRLRFIQPRAFASRSCRYGMHFMLFIGVDSENKTVVFAQGFFSDQSSDTYQWALKHYCTICGGQPE-------------VIITDADAGMTHAVETFLPSTTVHLYCLWHVMKNVRKNCARALGKKASRFYRLLHAAAFAATEEACSDAWSEIFRHVKGSDCEEYVTGHLLRHHRHWSRCFFPTTMTLNMTATQRVEGMFSVLKKGRIVNRRCSLVRVKAELEKRIAGFTLASNL 356
BLAST of mRNA_Ecto-sp13_S_contig15548.4126.1 vs. uniprot
Match: A0A6H5KG54_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG54_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 1.310e-14 Identity = 71/279 (25.45%), Postives = 112/279 (40.14%), Query Frame = 3
Query: 624 LRSIMLASPKQIILARTNGGVVIQDNTCLTNRCVDVKLSLFMGVNSENKTVIFAQGFLSNEQNSLFDFANRFLLEICGGHPKHPIVCTTCCPLPHVIINDAGAAMTSPIAELMPHAKHLYCSWHISKNLKRKCGG---------------------------------------KTFADVVKRYTAESFATS------------MKAFERTWNQLKEVVKGTPCEGYI-NGYLYEGHW----HAATMILGMRASQRVEASFSAIKNGSAVRKHSTFCAV 1292
L ++ A+ Q A GG + D T NR + LF+GV+ EN++ I QG L +E F++ GG + P VI+ DA AMTS + + +HL+C WH++KNL +KC G +D + Y +++ +AF + Q++++ GT CE Y+ N + + W T+ LGM A+QRVE FS K +++ S CA+
Sbjct: 289 LVNVFWATADQQERAARFGGCIQMDTTVFANR-YGCPVLLFVGVDDENRSCILGQGLLRSECAETFEWFLTQYESAAGGWERRP----------KVILTDADVAMTSAVPSVWKGTQHLFCLWHVNKNLVKKCAGALSDHDRTRMLRSFRSAAYAVNAEVRFEASSPAPGTLFRSKLSDCLGSYLIQTWPNMALPVATRHRCAYFQAFASSRGQMEQISTGTKCEEYVDNLFKNKSKWAFYCRTTTLALGMAATQRVEGLFSVAKRMGVIKQLS-LCAL 555
BLAST of mRNA_Ecto-sp13_S_contig15548.4126.1 vs. uniprot
Match: A0A015IP45_RHIIW (Uncharacterized protein n=1 Tax=Rhizophagus irregularis (strain DAOM 197198w) TaxID=1432141 RepID=A0A015IP45_RHIIW) HSP 1 Score: 73.6 bits (179), Expect = 3.050e-10 Identity = 64/245 (26.12%), Postives = 116/245 (47.35%), Query Frame = 3
Query: 606 TQHHHVLRSIMLASPKQIILARTNGGVVIQDNTCLTNRCVDVKLSLFMGVNSENKTVIFAQGFLSNEQNSLFDFANRFLLEICGGHPKHPIVCTTCCPLPHVIINDAGAAMTSPIAELMPHAKHLYCSWHISKN----LKRKCGGKTFADVVKRYTAESFATSMKAFERTWNQLKEVVKGTP-CEGYINGYLYEGH--WHAATMIL----GMRASQRVEASFSAIKNGSAVRKHSTFCAVKKRVD 1307
T + L I SP Q+ L R +V+ DNTC TN+ ++ LS+FM ++ + A + +E +S + + + L++ +P D+ + + +A++ P+ H YC +HI +N LK K G + F++ K + A A ++ FE+ W K ++K P C+ Y+ LY W A M G++++Q VE+ + IK ++ ST C V++ ++
Sbjct: 78 TGSENRLSGIFWMSPSQLELYRRFSDIVLNDNTCKTNK-YNMYLSVFMIKDNYGRFRNVANALIEDELSSTYTWILQCLVKATDNI------------IPKSFWTDSEPGLINAVAQVFPNTPHFYCMFHIWQNIIKHLKSKLG-ENFSNFSKAFYACRNALCIEIFEQRW---KFMIKSFPNCKRYMTRTLYNNRISWAKAYMPFQFNGGIQSTQSVESFNNIIKR--SLNSTSTLCEVEEAIN 303
BLAST of mRNA_Ecto-sp13_S_contig15548.4126.1 vs. uniprot
Match: A0A0K9Q4I4_ZOSMR (Protein FAR1-RELATED SEQUENCE n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9Q4I4_ZOSMR) HSP 1 Score: 73.6 bits (179), Expect = 3.280e-10 Identity = 62/225 (27.56%), Postives = 96/225 (42.67%), Query Frame = 3
Query: 624 LRSIMLASPKQIILARTNGGVVIQDNTCLTNRCVDVKLSLFMGVNSENKTVIFAQGFLSNEQNSLFDFANRFLLEICGGHPKHPIVCTTCCPLPHVIINDAGAAMTSPIAELMPHAKHLYCSWHISKNLKRKCGGK-TFADVVKRY-----TAE----------SFATSMKAFERTWNQLKEVVKGTPCEGYINGYLYEGHWHAATMILGMRASQRVEASFSAIK 1250
L+ + A PK I + G + D T TN+ + + +F GVN+ +TV+FA GFLSNE F + + G +PK II D AAM + I+ P H C WHI+ + K G D ++R+ T+E S+AT K E W + ++ + C Y+ + + G M+++QR E S +K
Sbjct: 287 LKQLFWADPKCIEEYKQYGEAITFDTTYNTNK-YKLIIGIFCGVNNHMRTVLFANGFLSNESTESFIWLFSEFKKCMGNYPK-------------TIITDQDAAMKTAISSEFPTTFHRLCKWHITHKMCDKVGTVYRNKDEMERFNKILNTSENINEFEKNWSSWATDNKLTENKWLKDMYTIRESWCPIYMTNHFFGG----------MQSTQRSEGMNSLVK 487
BLAST of mRNA_Ecto-sp13_S_contig15548.4126.1 vs. uniprot
Match: UPI000901D02A (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI000901D02A) HSP 1 Score: 70.5 bits (171), Expect = 2.220e-9 Identity = 58/210 (27.62%), Postives = 95/210 (45.24%), Query Frame = 3
Query: 678 GGVVIQDNTCLTNRCVDVKLSLFMGVNSENKTVIFAQGFLSNEQNSLFDFA-NRFLLEICGGHPKHPIVCTTCCPLPHVIINDAGAAMTSPIAELMPHAKHLYCSWHIS----KNLKRKCGGKTFADVVKRYTAESFATSMKAFERTWNQLKEVVKGTPCEGYINGYLYEGHW---HAATMILG-MRASQRVEASFSAIKNGSAVRKHST 1280
G +++ D T TN+ D+ F+G+N NK V+F GF+ NE+ F + N FL + G KHP+ I+ D A+M I E+ P+++ C+WHI KN+K+ F D+ T + ++ F W+ + E + + Y+ + W H+ G + +SQR E + +I R HST
Sbjct: 265 GDLLVHDTTYRTNK-YDMICGPFVGMNHNNKNVMFGIGFILNEKTVSFIWLFNTFLKSMSG---KHPVT----------IMTDQSASMAKAIREVFPNSRQRLCTWHIGENSKKNIKKLRAMDGFTDLFN--TVLKYTYTIAGFNYYWSSMVEKYNCAEVKWIQDLYVIKDLWCPAHSKDYFSGGILSSQRSETTNKSISR----RLHST 454
BLAST of mRNA_Ecto-sp13_S_contig15548.4126.1 vs. uniprot
Match: UPI00053FFEC4 (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FFEC4) HSP 1 Score: 66.6 bits (161), Expect = 1.760e-8 Identity = 37/113 (32.74%), Postives = 59/113 (52.21%), Query Frame = 3
Query: 678 GGVVIQDNTCLTNRCVDVKLSLFMGVNSENKTVIFAQGFLSNEQNSLFDFANRFLLEICGGHPKHPIVCTTCCPLPHVIINDAGAAMTSPIAELMPHAKHLYCSWHISKNLKR 1016
G +++ D T TN+ D+ F+G+N NK V+F GF+ NE+ F + L+ GG KHP+ I+ D A+M I E+ P+++ C+WHI +N K+
Sbjct: 178 GDLLVHDTTYRTNK-YDMICGPFVGMNHNNKNVMFGIGFILNEKAVSFIWLFNTFLKSMGG--KHPVT----------IMTDQSASMAKAIREVFPNSRQRLCTWHIGENSKK 277
BLAST of mRNA_Ecto-sp13_S_contig15548.4126.1 vs. uniprot
Match: A0A6H5JP13_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP13_9PHAE) HSP 1 Score: 67.0 bits (162), Expect = 4.040e-8 Identity = 52/193 (26.94%), Postives = 80/193 (41.45%), Query Frame = 3
Query: 909 VIINDAGAAMTSPIAELMPHAKHLYCSWHISKNLKRKCGG---------------------------------------KTFADVVKRYTAESFATS------------MKAFERTWNQLKEVVKGTPCEGYI-NGYLYEGHW----HAATMILGMRASQRVEASFSAIKNGSAVRKHSTFCA---VKKRVDT 1310
VI+ DA AMTS +A + +HL+C WH++KNL +KC G +D + Y +++ +AF + Q++++ GT CE Y+ N + + W T+ LGM A+QRVE FS K + V K + CA V +RV+T
Sbjct: 11 VILTDADVAMTSAVASVWKGTQHLFCLWHVNKNLVKKCAGALSDHDRTRMLRSFRSAAYAVNAEVRFEASSPAPGTLFRSKLSDCLGSYLIQTWPNMALPVATRHRCAYFQAFASSRGQMEQISAGTKCEEYVDNLFKNKSKWAFYCRTTTLALGMAATQRVEGLFSVAKR-TGVIKQLSLCALWDVLRRVET 202
BLAST of mRNA_Ecto-sp13_S_contig15548.4126.1 vs. uniprot
Match: A0A6A3CN33_HIBSY (Protein FAR1-RELATED SEQUENCE n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3CN33_HIBSY) HSP 1 Score: 66.2 bits (160), Expect = 5.040e-8 Identity = 36/133 (27.07%), Postives = 62/133 (46.62%), Query Frame = 3
Query: 681 GVVIQDNTCLTNRCVDVKLSLFMGVNSENKTVIFAQGFLSNEQNSLFDFANRFLLEICGGHPKHPIVCTTCCPLPHVIINDAGAAMTSPIAELMPHAKHLYCSWHISKNLKRKCGGKTFADVVKRYTAESFAT 1079
G VI +T + + + +GVN+ + T++FA +++E + F++ + LE K PI ++ D AM I ++P+AKH+ CSWH+S+N + G F RY + T
Sbjct: 185 GDVIAFDTTYKDNMYGLPIMPIVGVNNHHNTIVFATTIIADEMSQSFEWVLKNFLEAMMN--KSPIS----------VVTDGDRAMQRAIKSVIPYAKHILCSWHLSRNAQANIGDPKFTAAFSRYMTSKWTT 305 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15548.4126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig15548.4126.1 >prot_Ecto-sp13_S_contig15548.4126.1 ID=prot_Ecto-sp13_S_contig15548.4126.1|Name=mRNA_Ecto-sp13_S_contig15548.4126.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=236bp MLASPKQIILARTNGGVVIQDNTCLTNRCVDVKLSLFMGVNSENKTVIFAback to top mRNA from alignment at Ecto-sp13_S_contig15548:1965..4040+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig15548.4126.1 ID=mRNA_Ecto-sp13_S_contig15548.4126.1|Name=mRNA_Ecto-sp13_S_contig15548.4126.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2076bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15548:1965..4040+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15548:1965..4040+ >mRNA_Ecto-sp13_S_contig15548.4126.1 ID=mRNA_Ecto-sp13_S_contig15548.4126.1|Name=mRNA_Ecto-sp13_S_contig15548.4126.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=708bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15548:1965..4040+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |