mRNA_Ecto-sp13_S_contig15543.4125.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig15543.4125.1 vs. uniprot
Match: D7G0Y7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y7_ECTSI) HSP 1 Score: 210 bits (535), Expect = 5.940e-59 Identity = 103/138 (74.64%), Postives = 112/138 (81.16%), Query Frame = 2
Query: 8 RKRMPWNAEFVGDTEGPLSYWGDDMVLEVTETGGVVVSIAGEVVIEMANPHKAKKGGWFRNHLRKLNPIRKVRETYGRHRHGRRKGSSSSDPPDSVHDXXXXXIVGTGYSLHVVEKGFEVRLEGEFVWG*YTDPL*RP 421
RKRM WNAE D++GPL YWGD VL+VTETG VVVSIAGE+VIEMANP KAKKGGWFRNH+RK NPIRKV + + RH H RRKGSS+SDP DSVHD IV T YSLHVVEKGFEVRLEGEFVWG YTD + RP
Sbjct: 530 RKRMKWNAEVAVDSDGPLPYWGDGTVLKVTETGDVVVSIAGEIVIEMANPRKAKKGGWFRNHVRKHNPIRKVGDAFRRHLHSRRKGSSNSDPSDSVHDTDT--IVSTDYSLHVVEKGFEVRLEGEFVWGWYTDSIGRP 665
BLAST of mRNA_Ecto-sp13_S_contig15543.4125.1 vs. uniprot
Match: D8LLQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ3_ECTSI) HSP 1 Score: 102 bits (255), Expect = 2.930e-20 Identity = 57/118 (48.31%), Postives = 71/118 (60.17%), Query Frame = 2
Query: 56 PLSYWGDDMVLEVTETGGVVVSIAGEVVIEMANPHKAKKGGWFRNHLRKLNPIRKVRETYGRHRHGR-RKGSSSSDPPDSVHDXXXXXIVGTGYSLHVVEKGFEVRLEGEFVWG*YTD 406
P Y+GDD+VL+VT+TG VVV++ G +V+E NP +GGW LRK NP+ + RHR R R GS S+ D IV GYSLHV EKGFEV+L+G FVWG D
Sbjct: 1567 PQRYFGDDIVLQVTKTGDVVVTVGGRIVVEKRNP-SGGQGGWLEKQLRKANPLATLGRIIRRHRLRRERNGSGGSNGVDG--------IVSFGYSLHVAEKGFEVQLDGVFVWGWDVD 1675
BLAST of mRNA_Ecto-sp13_S_contig15543.4125.1 vs. uniprot
Match: D8LLQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ0_ECTSI) HSP 1 Score: 98.2 bits (243), Expect = 1.050e-18 Identity = 57/127 (44.88%), Postives = 73/127 (57.48%), Query Frame = 2
Query: 56 PLSYWGDDMVLEVTETGGVVVSIAGEVVIEMANPHKAK---------KGGWFRNHLRKLNPIRKVRETYGRHRHGRR-KGSSSSDPPDSVHDXXXXXIVGTGYSLHVVEKGFEVRLEGEFVWG*YTD 406
P Y+GDD+VL+VT+TG VVV+I G++V+E NP + + +G W LRK N + + RHR R +G S+ D IV GYSLHVVEKGFEV+LEG FVWG Y D
Sbjct: 1566 PQRYFGDDIVLQVTKTGDVVVTIGGQIVMEKRNPLRRQAENLDQSGGRGNWVEKQLRKANSLATLGRIIRRHRLRRENEGGVDSNGADE--------IVSFGYSLHVVEKGFEVKLEGVFVWGWYLD 1684
BLAST of mRNA_Ecto-sp13_S_contig15543.4125.1 vs. uniprot
Match: D8LN98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN98_ECTSI) HSP 1 Score: 88.6 bits (218), Expect = 1.330e-15 Identity = 54/127 (42.52%), Postives = 72/127 (56.69%), Query Frame = 2
Query: 41 GDTEGPLSYWGDDMVLEVTETGGVVVSIAGEVVIEMANP--HKAKK-------GGWFRNHLRKLNPIRKVRETYGRHRHGRRKGSSSSDPPDSVHDXXXXXIVGTGYSLHVVEKGFEVRLEGEFVWG 394
G + P +Y+GDD+VL+VT+TG VVV++ G +V+E NP +A+K G W L K NP+ + R R RR+G SS V GYSLHVV+KGFEV+L+G FVWG
Sbjct: 568 GPSIPPPTYFGDDIVLQVTKTGDVVVTVGGRIVVEKRNPFARQAEKLDPSGGRGNWLERQLWKANPLATLGRII-RRRRLRREGKSSGG------SNGIDENVSFGYSLHVVQKGFEVQLDGVFVWG 687
BLAST of mRNA_Ecto-sp13_S_contig15543.4125.1 vs. uniprot
Match: D8LLS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLS3_ECTSI) HSP 1 Score: 85.5 bits (210), Expect = 1.780e-14 Identity = 49/121 (40.50%), Postives = 70/121 (57.85%), Query Frame = 2
Query: 56 PLSYWGDDMVLEVTETGGVVVSIAGEVVIEMANPHKAKKGGWFRNHLRKLNPIRKVRETYGR-HRHGRRKGSSSSDPP----DSVHDXXXXXIVGTGYSLHVVEKGFEVRLEGEFVWG*YT 403
P YWGDD+VL+VT+ G V+V++ VV++ NP++ K GW + L P +KV+ + R R G+R + + ++ D + T YSLHVVE GF+VRLEG FVWG Y
Sbjct: 1383 PEGYWGDDVVLKVTDMGDVLVTVGDRVVVQKRNPNR--KVGWVKK-LGNSRPAKKVKGIFRRLGRRGKRDKNDNXXXXXTRENNARDDDKGAVRSTLYSLHVVENGFQVRLEGVFVWGWYV 1500
BLAST of mRNA_Ecto-sp13_S_contig15543.4125.1 vs. uniprot
Match: D7G9F6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9F6_ECTSI) HSP 1 Score: 83.6 bits (205), Expect = 3.530e-14 Identity = 49/128 (38.28%), Postives = 68/128 (53.12%), Query Frame = 2
Query: 65 YWGD--------DMVLEVTETGGVVVSIAGEVVIEMANPH-KAKKGGWFRNHLRKLNPIRKVRETYGR-HRHGRRKGSSS----SDPPDSVHDXXXXXIVGTGYSLHVVEKGFEVRLEGEFVWG*YTD 406
YWGD D+ L+VT TG V+V++ VV++ NP KK W + + K P++K+++ +GR R G+ G + SD V T YSLHVVE G EVRLEG F+WG Y +
Sbjct: 289 YWGDEARRXXXXDVALKVTNTGDVLVTVGDLVVVQKRNPMWTKKKESWLQRKVAKSKPVKKIKDVFGRLGRRGKGNGKTDNKARSDXXXXXXGNGDGAPVSTMYSLHVVENGLEVRLEGVFMWGWYAE 416
BLAST of mRNA_Ecto-sp13_S_contig15543.4125.1 vs. uniprot
Match: D8LLQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ5_ECTSI) HSP 1 Score: 80.5 bits (197), Expect = 8.240e-13 Identity = 51/126 (40.48%), Postives = 73/126 (57.94%), Query Frame = 2
Query: 56 PLSYWGDDMVLEVTETGGVVVSIAGEVVIEMANPHKAKKGGWFRNHLRKLNPIRKVRETYGR-HRHGRRKGSSSSDPPDSVHDXXXXX---------IVGTGYSLHVVEKGFEVRLEGEFVWG*YT 403
P YWGDD+VL+VT+ G V+V++ VV++ NP++ K GW + L P +KV+ + R R G+R + + ++ + XXX + T YSLHVVE GF+VRLEG FVWG Y
Sbjct: 1548 PEGYWGDDVVLKVTDMGDVLVAVGDRVVVQKRNPNR--KVGWVKK-LGNSRPAKKVKGIFRRLGRRGKRDKNDIDNDSNTRENNAXXXXXXXDNKGAVRSTLYSLHVVENGFQVRLEGVFVWGWYV 1670
BLAST of mRNA_Ecto-sp13_S_contig15543.4125.1 vs. uniprot
Match: A0A6H5L8D9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D9_9PHAE) HSP 1 Score: 73.9 bits (180), Expect = 1.160e-10 Identity = 48/124 (38.71%), Postives = 65/124 (52.42%), Query Frame = 2
Query: 56 PLSYWGDDMVLEVTETGGVVVSIAGEVVIEMANPHKAKKGGWFRNHLRKLNPIRKVRETYGRHRH-GRRKGSSSSDPP----------DSVHDXXXXXIVGTGYSLHVVEKGFEVRLEGEFVWG 394
P YWGDD+VL+VT+ G V+V++ VV++ NP++ K GW ++KL R + G R GRR SD D+ + + T YSLHVVE G E+RL G FVWG
Sbjct: 1509 PERYWGDDVVLKVTDMGDVLVTVGDRVVVQKLNPNR--KVGW----VKKLGESRPAKMIKGIFRSLGRRGKRDKSDNXXXXXXXXXTRDNKNRDDKGAVRSTLYSLHVVENGVEIRLGGVFVWG 1626
BLAST of mRNA_Ecto-sp13_S_contig15543.4125.1 vs. uniprot
Match: A0A6H5JJM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJM2_9PHAE) HSP 1 Score: 69.3 bits (168), Expect = 2.950e-9 Identity = 52/149 (34.90%), Postives = 66/149 (44.30%), Query Frame = 2
Query: 56 PLSYWGDDMVLEVTETGGV----------------------------VVSIAGEVVIEMANPHK---------AKKGGWFRNHLRKLNPIRKVRETYGRHRHGR-RKGSSSSDPPDSVHDXXXXXIVGTGYSLHVVEKGFEVRLEGEFV 388
P Y+GD +VL+VT+ G V VV+I G++V+E NP + ++G W L K NP+ V RHR R R S+SS+ D IV YSLHVVEKGFEV LE FV
Sbjct: 541 PQRYFGDVIVLQVTKAGDVAAELYDAHTATLEILAYLSAMLPPPSVEVVTIGGQIVMEKGNPFRRQTEKLDPSGERGNWLEKQLNKANPLSTVGRIIRRHRLRRERNDSASSNGADE--------IVSLAYSLHVVEKGFEVELESVFV 681 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15543.4125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig15543.4125.1 >prot_Ecto-sp13_S_contig15543.4125.1 ID=prot_Ecto-sp13_S_contig15543.4125.1|Name=mRNA_Ecto-sp13_S_contig15543.4125.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=127bp MPWNAEFVGDTEGPLSYWGDDMVLEVTETGGVVVSIAGEVVIEMANPHKAback to top mRNA from alignment at Ecto-sp13_S_contig15543:763..2659- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig15543.4125.1 ID=mRNA_Ecto-sp13_S_contig15543.4125.1|Name=mRNA_Ecto-sp13_S_contig15543.4125.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1897bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15543:763..2659- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15543:763..2659- >mRNA_Ecto-sp13_S_contig15543.4125.1 ID=mRNA_Ecto-sp13_S_contig15543.4125.1|Name=mRNA_Ecto-sp13_S_contig15543.4125.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15543:763..2659- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |