mRNA_Ecto-sp13_S_contig15543.4125.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15543.4125.1
Unique NamemRNA_Ecto-sp13_S_contig15543.4125.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15543.4125.1 vs. uniprot
Match: D7G0Y7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y7_ECTSI)

HSP 1 Score: 210 bits (535), Expect = 5.940e-59
Identity = 103/138 (74.64%), Postives = 112/138 (81.16%), Query Frame = 2
Query:    8 RKRMPWNAEFVGDTEGPLSYWGDDMVLEVTETGGVVVSIAGEVVIEMANPHKAKKGGWFRNHLRKLNPIRKVRETYGRHRHGRRKGSSSSDPPDSVHDXXXXXIVGTGYSLHVVEKGFEVRLEGEFVWG*YTDPL*RP 421
            RKRM WNAE   D++GPL YWGD  VL+VTETG VVVSIAGE+VIEMANP KAKKGGWFRNH+RK NPIRKV + + RH H RRKGSS+SDP DSVHD     IV T YSLHVVEKGFEVRLEGEFVWG YTD + RP
Sbjct:  530 RKRMKWNAEVAVDSDGPLPYWGDGTVLKVTETGDVVVSIAGEIVIEMANPRKAKKGGWFRNHVRKHNPIRKVGDAFRRHLHSRRKGSSNSDPSDSVHDTDT--IVSTDYSLHVVEKGFEVRLEGEFVWGWYTDSIGRP 665          
BLAST of mRNA_Ecto-sp13_S_contig15543.4125.1 vs. uniprot
Match: D8LLQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ3_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 2.930e-20
Identity = 57/118 (48.31%), Postives = 71/118 (60.17%), Query Frame = 2
Query:   56 PLSYWGDDMVLEVTETGGVVVSIAGEVVIEMANPHKAKKGGWFRNHLRKLNPIRKVRETYGRHRHGR-RKGSSSSDPPDSVHDXXXXXIVGTGYSLHVVEKGFEVRLEGEFVWG*YTD 406
            P  Y+GDD+VL+VT+TG VVV++ G +V+E  NP    +GGW    LRK NP+  +     RHR  R R GS  S+  D         IV  GYSLHV EKGFEV+L+G FVWG   D
Sbjct: 1567 PQRYFGDDIVLQVTKTGDVVVTVGGRIVVEKRNP-SGGQGGWLEKQLRKANPLATLGRIIRRHRLRRERNGSGGSNGVDG--------IVSFGYSLHVAEKGFEVQLDGVFVWGWDVD 1675          
BLAST of mRNA_Ecto-sp13_S_contig15543.4125.1 vs. uniprot
Match: D8LLQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ0_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.050e-18
Identity = 57/127 (44.88%), Postives = 73/127 (57.48%), Query Frame = 2
Query:   56 PLSYWGDDMVLEVTETGGVVVSIAGEVVIEMANPHKAK---------KGGWFRNHLRKLNPIRKVRETYGRHRHGRR-KGSSSSDPPDSVHDXXXXXIVGTGYSLHVVEKGFEVRLEGEFVWG*YTD 406
            P  Y+GDD+VL+VT+TG VVV+I G++V+E  NP + +         +G W    LRK N +  +     RHR  R  +G   S+  D         IV  GYSLHVVEKGFEV+LEG FVWG Y D
Sbjct: 1566 PQRYFGDDIVLQVTKTGDVVVTIGGQIVMEKRNPLRRQAENLDQSGGRGNWVEKQLRKANSLATLGRIIRRHRLRRENEGGVDSNGADE--------IVSFGYSLHVVEKGFEVKLEGVFVWGWYLD 1684          
BLAST of mRNA_Ecto-sp13_S_contig15543.4125.1 vs. uniprot
Match: D8LN98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN98_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 1.330e-15
Identity = 54/127 (42.52%), Postives = 72/127 (56.69%), Query Frame = 2
Query:   41 GDTEGPLSYWGDDMVLEVTETGGVVVSIAGEVVIEMANP--HKAKK-------GGWFRNHLRKLNPIRKVRETYGRHRHGRRKGSSSSDPPDSVHDXXXXXIVGTGYSLHVVEKGFEVRLEGEFVWG 394
            G +  P +Y+GDD+VL+VT+TG VVV++ G +V+E  NP   +A+K       G W    L K NP+  +     R R  RR+G SS               V  GYSLHVV+KGFEV+L+G FVWG
Sbjct:  568 GPSIPPPTYFGDDIVLQVTKTGDVVVTVGGRIVVEKRNPFARQAEKLDPSGGRGNWLERQLWKANPLATLGRII-RRRRLRREGKSSGG------SNGIDENVSFGYSLHVVQKGFEVQLDGVFVWG 687          
BLAST of mRNA_Ecto-sp13_S_contig15543.4125.1 vs. uniprot
Match: D8LLS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLS3_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 1.780e-14
Identity = 49/121 (40.50%), Postives = 70/121 (57.85%), Query Frame = 2
Query:   56 PLSYWGDDMVLEVTETGGVVVSIAGEVVIEMANPHKAKKGGWFRNHLRKLNPIRKVRETYGR-HRHGRRKGSSSSDPP----DSVHDXXXXXIVGTGYSLHVVEKGFEVRLEGEFVWG*YT 403
            P  YWGDD+VL+VT+ G V+V++   VV++  NP++  K GW +  L    P +KV+  + R  R G+R  + +        ++  D     +  T YSLHVVE GF+VRLEG FVWG Y 
Sbjct: 1383 PEGYWGDDVVLKVTDMGDVLVTVGDRVVVQKRNPNR--KVGWVKK-LGNSRPAKKVKGIFRRLGRRGKRDKNDNXXXXXTRENNARDDDKGAVRSTLYSLHVVENGFQVRLEGVFVWGWYV 1500          
BLAST of mRNA_Ecto-sp13_S_contig15543.4125.1 vs. uniprot
Match: D7G9F6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9F6_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 3.530e-14
Identity = 49/128 (38.28%), Postives = 68/128 (53.12%), Query Frame = 2
Query:   65 YWGD--------DMVLEVTETGGVVVSIAGEVVIEMANPH-KAKKGGWFRNHLRKLNPIRKVRETYGR-HRHGRRKGSSS----SDPPDSVHDXXXXXIVGTGYSLHVVEKGFEVRLEGEFVWG*YTD 406
            YWGD        D+ L+VT TG V+V++   VV++  NP    KK  W +  + K  P++K+++ +GR  R G+  G +     SD             V T YSLHVVE G EVRLEG F+WG Y +
Sbjct:  289 YWGDEARRXXXXDVALKVTNTGDVLVTVGDLVVVQKRNPMWTKKKESWLQRKVAKSKPVKKIKDVFGRLGRRGKGNGKTDNKARSDXXXXXXGNGDGAPVSTMYSLHVVENGLEVRLEGVFMWGWYAE 416          
BLAST of mRNA_Ecto-sp13_S_contig15543.4125.1 vs. uniprot
Match: D8LLQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ5_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 8.240e-13
Identity = 51/126 (40.48%), Postives = 73/126 (57.94%), Query Frame = 2
Query:   56 PLSYWGDDMVLEVTETGGVVVSIAGEVVIEMANPHKAKKGGWFRNHLRKLNPIRKVRETYGR-HRHGRRKGSSSSDPPDSVHDXXXXX---------IVGTGYSLHVVEKGFEVRLEGEFVWG*YT 403
            P  YWGDD+VL+VT+ G V+V++   VV++  NP++  K GW +  L    P +KV+  + R  R G+R  +   +  ++  +  XXX         +  T YSLHVVE GF+VRLEG FVWG Y 
Sbjct: 1548 PEGYWGDDVVLKVTDMGDVLVAVGDRVVVQKRNPNR--KVGWVKK-LGNSRPAKKVKGIFRRLGRRGKRDKNDIDNDSNTRENNAXXXXXXXDNKGAVRSTLYSLHVVENGFQVRLEGVFVWGWYV 1670          
BLAST of mRNA_Ecto-sp13_S_contig15543.4125.1 vs. uniprot
Match: A0A6H5L8D9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D9_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.160e-10
Identity = 48/124 (38.71%), Postives = 65/124 (52.42%), Query Frame = 2
Query:   56 PLSYWGDDMVLEVTETGGVVVSIAGEVVIEMANPHKAKKGGWFRNHLRKLNPIRKVRETYGRHRH-GRRKGSSSSDPP----------DSVHDXXXXXIVGTGYSLHVVEKGFEVRLEGEFVWG 394
            P  YWGDD+VL+VT+ G V+V++   VV++  NP++  K GW    ++KL   R  +   G  R  GRR     SD            D+ +      +  T YSLHVVE G E+RL G FVWG
Sbjct: 1509 PERYWGDDVVLKVTDMGDVLVTVGDRVVVQKLNPNR--KVGW----VKKLGESRPAKMIKGIFRSLGRRGKRDKSDNXXXXXXXXXTRDNKNRDDKGAVRSTLYSLHVVENGVEIRLGGVFVWG 1626          
BLAST of mRNA_Ecto-sp13_S_contig15543.4125.1 vs. uniprot
Match: A0A6H5JJM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJM2_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 2.950e-9
Identity = 52/149 (34.90%), Postives = 66/149 (44.30%), Query Frame = 2
Query:   56 PLSYWGDDMVLEVTETGGV----------------------------VVSIAGEVVIEMANPHK---------AKKGGWFRNHLRKLNPIRKVRETYGRHRHGR-RKGSSSSDPPDSVHDXXXXXIVGTGYSLHVVEKGFEVRLEGEFV 388
            P  Y+GD +VL+VT+ G V                            VV+I G++V+E  NP +          ++G W    L K NP+  V     RHR  R R  S+SS+  D         IV   YSLHVVEKGFEV LE  FV
Sbjct:  541 PQRYFGDVIVLQVTKAGDVAAELYDAHTATLEILAYLSAMLPPPSVEVVTIGGQIVMEKGNPFRRQTEKLDPSGERGNWLEKQLNKANPLSTVGRIIRRHRLRRERNDSASSNGADE--------IVSLAYSLHVVEKGFEVELESVFV 681          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15543.4125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G0Y7_ECTSI5.940e-5974.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLQ3_ECTSI2.930e-2048.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLQ0_ECTSI1.050e-1844.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LN98_ECTSI1.330e-1542.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLS3_ECTSI1.780e-1440.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G9F6_ECTSI3.530e-1438.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLQ5_ECTSI8.240e-1340.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L8D9_9PHAE1.160e-1038.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJM2_9PHAE2.950e-934.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15543contigEcto-sp13_S_contig15543:763..2659 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1029
Hectar predicted targeting categoryother localisation
Exons2
Cds size381
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462824.2815454-UTR-Ecto-sp13_S_contig15543:762..13941681462824.2815454-UTR-Ecto-sp13_S_contig15543:762..1394Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15543 763..1394 -
1681462824.3056753-UTR-Ecto-sp13_S_contig15543:2643..26591681462824.3056753-UTR-Ecto-sp13_S_contig15543:2643..2659Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15543 2644..2659 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462824.289699-CDS-Ecto-sp13_S_contig15543:1394..16791681462824.289699-CDS-Ecto-sp13_S_contig15543:1394..1679Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15543 1395..1679 -
1681462824.2973032-CDS-Ecto-sp13_S_contig15543:2547..26431681462824.2973032-CDS-Ecto-sp13_S_contig15543:2547..2643Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15543 2548..2643 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15543.4125.1prot_Ecto-sp13_S_contig15543.4125.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15543 1395..2643 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15543.4125.1

>prot_Ecto-sp13_S_contig15543.4125.1 ID=prot_Ecto-sp13_S_contig15543.4125.1|Name=mRNA_Ecto-sp13_S_contig15543.4125.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=127bp
MPWNAEFVGDTEGPLSYWGDDMVLEVTETGGVVVSIAGEVVIEMANPHKA
KKGGWFRNHLRKLNPIRKVRETYGRHRHGRRKGSSSSDPPDSVHDTVHDT
IVGTGYSLHVVEKGFEVRLEGEFVWG*
back to top

mRNA from alignment at Ecto-sp13_S_contig15543:763..2659-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15543.4125.1 ID=mRNA_Ecto-sp13_S_contig15543.4125.1|Name=mRNA_Ecto-sp13_S_contig15543.4125.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1897bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15543:763..2659- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGAGCCGTAAGCGAATGCCGTGGAACGCTGAGTTCGTGGGTGACACCG AGGGGCCGCTATCGTACTGGGGCGACGACATGGTGCTTGAGGTCACCGAG ACTGGTGGCGTGGTGAGTGAGAAAGAAGTGGCACCTATGAGGAATGGCTA TTCCGGCAGTCCGAAACCATTGGCAGCCCCTACTCCCTCGCGCAGGTAGA AGTGGTTGGTAAGTCAGTTCCATATCGTGGCACAAACACTTGTTTGGGGG AGCAGGCGAGCTGGTCTCAGCAAGTACCAAGCAAGCAAGAACCAAGAAGA AAATCGAGATTCGTGGCCGAGCCTGACACCACGTTATCGCCGTCCCATCA ATCCCGTTAGGTGGGCCATCGCGCACATCACCCTCACCAGCAAGTAGTCA AAGTTTACCGTTATCATACCATCGACCGTGGGATATCACCACTTTCATGG TGCGGCAGACAATTGCATGGGCAGCGACGAGCCTGAACCACAGCCCAGAG TACGGTGAAACTCAACGAAATCTTGACCTGCTCCCTGCAACCCTTCATCT CAGGTAGACCCCTTCAATGCCGTCCGGGAAAATGAGTGATGTTGGTCCAT CGTAAGTCGTAGAATCTGTACCCCGTTGCTACCTTTGCTTTTCAACCGGT CGTTTTCTGTTGAGAAGTCACGTATCTGGTGTCGCAGACACTAATCCCCG TTCTGGGCATGTGACTAAAGTGGGTCATTGGTTCTTGCCCTCGACGATAG CCCCATGACTAGCGCGATGAAGCGAGAGATGTTCCGTACATCGGGTTCTT CTCCAACACGACAGCGCGACTGTAGCCACGCCAAGCTCTTCCATGATGCC TAACGAAAACATTGATAACGGTGTTTGTGTTTCTTCTTCATCTTGCCCAG CATATTGAAACAACGTGGATGATATGTGGTGTGGGTTGCTTTGGTTGTCG TCCATATCATGGTGAGCCTATCACAAGCAGGTGGTAAGCATCGCGGGGGA GGTCGTGATTGAGATGGCCAATCCGCACAAAGCCAAGAAGGGCGGCTGGT TCAGAAACCACCTTCGGAAGCTCAATCCGATCAGGAAGGTTCGGGAAACC TATGGTCGCCACCGCCACGGTCGACGAAAGGGCAGCAGTAGCAGCGACCC CCCCGACAGCGTCCACGACACCGTCCACGACACCATCGTCGGCACCGGCT ACTCTCTGCACGTGGTGGAGAAGGGTTTTGAGGTCCGACTAGAGGGGGAG TTCGTATGGGGATGATACACCGATCCATTGTGACGCCCGCAATGGTTGGT TTGCCACCAGTGAGTGAGTGTTTGTTACATGTTGCATTTATCGCCGACCA CTCCCATTGTTCGAAAAATTTCCTTGGTTTCCCAGCTTGAACACCGGAGG GAGGTTATCGGAGATGTTTGCTGTTGTTGCGACCGCCGCAAGCTCGAAAA TGAATGAACTCGATGTTTTCCAGAGGTCGCGCGTCTCGTTTGAGAGACAG ACCTCATTTGGTGGGAATGGTTGCGGTAATGTTACCTTGGATCGTAGCTA TAGTGAAGGAGGCAACCGCATGGTAGGTGTACTGGGAACAACCGTAGCAT AGTATCGTGGGAGTGAGCCCAGATGTCGCGAAGCATACTACAGCATCTCC GATGATGTTAGGCTGCAAGTTATTACCGGGTGAGTGCATGCGGACATCAA GATTTGCCAATTTGACATCTGGTTCATTCGTGTTCTTGACGCACAGGCAT GGGGGTATTGCACATTGTCGACCGCCATGCGGATGGTGGCCGGATTTGTG TGCAATTGCCGCGACTCGGATCATCCGAATAAAAGCCATGTTGCGAATTT CAACGCTTGAACAAGCCCCGAACGAGGCCATCATAGACTACAGGTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15543:763..2659-

>mRNA_Ecto-sp13_S_contig15543.4125.1 ID=mRNA_Ecto-sp13_S_contig15543.4125.1|Name=mRNA_Ecto-sp13_S_contig15543.4125.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15543:763..2659- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGTGGAACGCTGAGTTCGTGGGTGACACCGAGGGGCCGCTATCGTA
CTGGGGCGACGACATGGTGCTTGAGGTCACCGAGACTGGTGGCGTGGTGG
TAAGCATCGCGGGGGAGGTCGTGATTGAGATGGCCAATCCGCACAAAGCC
AAGAAGGGCGGCTGGTTCAGAAACCACCTTCGGAAGCTCAATCCGATCAG
GAAGGTTCGGGAAACCTATGGTCGCCACCGCCACGGTCGACGAAAGGGCA
GCAGTAGCAGCGACCCCCCCGACAGCGTCCACGACACCGTCCACGACACC
ATCGTCGGCACCGGCTACTCTCTGCACGTGGTGGAGAAGGGTTTTGAGGT
CCGACTAGAGGGGGAGTTCGTATGGGGATGA
back to top