mRNA_Ecto-sp13_S_contig1553.4115.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1553.4115.1
Unique NamemRNA_Ecto-sp13_S_contig1553.4115.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1553.4115.1 vs. uniprot
Match: D8LRU6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRU6_ECTSI)

HSP 1 Score: 999 bits (2583), Expect = 0.000e+0
Identity = 559/638 (87.62%), Postives = 569/638 (89.18%), Query Frame = 2
Query:  299 MAPPLPKGRSVPLKKTVLEEEEYVDRLGEIIEGDYFPNNAKMYRALAGLADHGQDPTPSRTPAGGSMVGTPVTVLRSIGESTEGGGLELRVNGGDPEGPSSSKDAGNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADRPKIGDSRPNQVKTWKHRTRNQLMFSPNLAASNDICRIEQAPTEAAQLLVKDGSTS---TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSDEALTATPYQPHQGEPENHSSEPPNAGGSTQRTEMDEPLHCPPRIDSNKGVDDFGSSESRADDPPAPQRPAPPVSRGAVVVKANPKVIQAHATRFPVPAPRKPSRGPWASPIEKPSSSRESVAELLAGTADSSGYEEVPMTPSRVPGVDGDSPQITWGSIDGTPMILDPRATPLPEAGGGTMDVASFMETLGGVVGGVGQQQFEIKDLPPRDKLAHRLEAVDTRRKRAKVGAGAAVDGRGTHTPAPATPMTPQTPGTGRQXXXXXXXXXRGGDTPAKGKGKGKA--AAVTPAARSLAARLAQRQSADTPFGGGLTPGRQRRRTNRSGGGAGANRG 2197
            MAPPLPKGRSVPLKKTVLEEEEYVDRLGEIIEGDYFPNNAKMYRALAGLADHGQD TPSRTPAGGSMVGTPVT LRSIG ST+G GLELRV+GG+ +GPSSS  AGNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADRPKIGDSRPNQVKTWKHRTRNQLMFSPNLAASNDICRIEQAPTEAAQLLVKDGSTS   T                                         XXXXXXXXXXXXXXX SSDEALTATP QPHQGEPE  SS PPNAGGSTQRTEMDEPLHCPPR+DSN+GVDDFGSSESRAD+PPAP RPAPPVSRGAVVVKANPKVIQAHATRFPVPAPRKPSRGPWASPIEKPSSSRESVAELLAGTADSSGYEEVPMTPSRVPGVDGDSPQITWGSIDGTPMILDPRATPLPEAG G MDVASFMETLGGVVGGVGQQQFEIKDLP RDKLAHRLEAVDTRRKRAK+GAGAA DGRGTHTPAPATPMTPQTPGTGR+XXXXXXXXXRGG TPAKGKG      AAVTPAARSLAARLAQRQS DTPFGGGLTPGRQRRRT+RSGGGAGANRG
Sbjct:    1 MAPPLPKGRSVPLKKTVLEEEEYVDRLGEIIEGDYFPNNAKMYRALAGLADHGQDTTPSRTPAGGSMVGTPVTGLRSIGGSTDGDGLELRVSGGNSDGPSSSNCAGNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADRPKIGDSRPNQVKTWKHRTRNQLMFSPNLAASNDICRIEQAPTEAAQLLVKDGSTSATATTKRRVIKQSEEVVKRVARATATSTKESADGDCHSSKSSGATXXXXXXXXXXXXXXXPSSDEALTATPDQPHQGEPEYQSSGPPNAGGSTQRTEMDEPLHCPPRVDSNEGVDDFGSSESRADEPPAPPRPAPPVSRGAVVVKANPKVIQAHATRFPVPAPRKPSRGPWASPIEKPSSSRESVAELLAGTADSSGYEEVPMTPSRVPGVDGDSPQITWGSIDGTPMILDPRATPLPEAGRGAMDVASFMETLGGVVGGVGQQQFEIKDLPARDKLAHRLEAVDTRRKRAKLGAGAAADGRGTHTPAPATPMTPQTPGTGRRXXXXXXXXXRGGRTPAKGKGXXXXXXAAVTPAARSLAARLAQRQSVDTPFGGGLTPGRQRRRTDRSGGGAGANRG 638          
BLAST of mRNA_Ecto-sp13_S_contig1553.4115.1 vs. uniprot
Match: A0A225X327_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X327_9STRA)

HSP 1 Score: 132 bits (333), Expect = 1.150e-29
Identity = 94/232 (40.52%), Postives = 127/232 (54.74%), Query Frame = 2
Query:  338 KKTVLEEEEYVDRLGEIIEGDYFPNNAKMYRALAGLADHGQDPTPSRTPAGGSMVGTPVTVLRSIGESTEGGGLEL------RVNGGDPEGPSSSKDAGNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADR-PKIGDSRPNQVKTWKHRTRNQLMFSPNLAASNDICRIEQAPTEAAQLLVKDGS 1012
            KK VLEEEEYVD L +IIE D+FP+  K+ R    L D    P  + T    +  G       S+     G G +       ++ G     P+  K   +   L +FVATHTSEDNE+F ELQEK  +   RRY WA+D   D +G+     KL +L NG  +S E+R   D ACA + PK  D RP+  +TWK+R RN L+F P L A+ DIC++E  P   +QLL+++ S
Sbjct:    3 KKVVLEEEEYVDALDQIIERDFFPDLPKLKRQAELLRDEEDLPWTNTTLRAATTQGN-----MSVRSDASGSGWDQPTPMAEQLTGSPVVEPAEDKSQASM-TLNRFVATHTSEDNESFNELQEKAVKDHERRYHWAFD---DKKGD----PKLHLLTNGTWISKEQRLLADKACAPKGPK--DDRPSAPETWKYRARNPLLFPPELEATRDICQVE--PGSKSQLLLENVS 217          
BLAST of mRNA_Ecto-sp13_S_contig1553.4115.1 vs. uniprot
Match: A0A2P4YVG3_9STRA (Uncharacterized protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YVG3_9STRA)

HSP 1 Score: 130 bits (327), Expect = 6.590e-29
Identity = 93/241 (38.59%), Postives = 130/241 (53.94%), Query Frame = 2
Query:  338 KKTVLEEEEYVDRLGEIIEGDYFPNNAKMYRALAGLADHGQD----------------PTPSRTPAGGSMVGTPVTVLRSIGESTEGGGLELRVNGGDPEGPSSSKDAGNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADR-PKIGDSRPNQVKTWKHRTRNQLMFSPNLAASNDICRIEQAPTEAAQLLVKDG 1009
            +K VLEEEEYV+ LG+IIE D+FP+ +K+ +    L D  ++                 T  R+ A  S    P   L    E + G  L+   +  D    S +        L +FV THTSEDNEAF ELQEK  +   RRY WA+D   D +G+     KL +L NG  +S E+R+  D ACA + PK  D RP+  +TWK+R RN L+F P+L  + +IC++E  P   AQLL+++G
Sbjct:    3 RKVVLEEEEYVEALGQIIERDFFPDLSKLKKQSELLRDEEENLPWTDTTLRVASMTRGNTSERSNASDSGWDEPTPTL----EQSTGSPLQDEDHAEDKSRASMT--------LNRFVTTHTSEDNEAFNELQEKTVKDHERRYHWAFD---DKKGD----PKLHLLTNGTWISKEQRQIADKACAPKGPK--DDRPSAPQTWKYRARNPLLFPPDLETTREICQVESGPR--AQLLLENG 220          
BLAST of mRNA_Ecto-sp13_S_contig1553.4115.1 vs. uniprot
Match: W2Q457_PHYPN (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2Q457_PHYPN)

HSP 1 Score: 129 bits (325), Expect = 1.590e-28
Identity = 93/232 (40.09%), Postives = 129/232 (55.60%), Query Frame = 2
Query:  338 KKTVLEEEEYVDRLGEIIEGDYFPNNAKMYRALAGLADHGQD-PTPSRTPAGGSMVGTPVTVLRSIGESTEGGGLELRVNGGDPE--GPSSSKDAGNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAY-DTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADR-PKIGDSRPNQVKTWKHRTRNQLMFSPNLAASNDICRIEQAPTEAAQLLVKDGSTS 1018
            KK VLEEEEYV+ LG+IIE D+FP+  K+ +    L    +  P    T    S     V+V  +I +S       +  +  D +  G  S   A     L +FVATHTSEDNE+F ELQEK  +  +RRY WA+ D    G+       KL +L NG  +S E+R+  D ACA + PK  D RP+  +TWK+R RN L+F P L A+ DIC+++  P +  QLL+++ S S
Sbjct:    3 KKVVLEEEEYVEALGQIIERDFFPDLPKLKKQTKLLRGEEEGLPWTDTTLRVASTSRGNVSVWSNISDSGWDQPTPVVEHSADDQVQGEDSDDSAKTSMTLNRFVATHTSEDNESFNELQEKAVKDHQRRYHWAFVDDKEKGD------PKLHLLTNGTWISKEQRQIADEACASKGPK--DYRPSAPETWKYRARNPLLFPPELEATRDICQVKADPGD--QLLLENSSKS 224          
BLAST of mRNA_Ecto-sp13_S_contig1553.4115.1 vs. uniprot
Match: D0MY39_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MY39_PHYIT)

HSP 1 Score: 127 bits (320), Expect = 4.400e-28
Identity = 93/229 (40.61%), Postives = 127/229 (55.46%), Query Frame = 2
Query:  338 KKTVLEEEEYVDRLGEIIEGDYFPNNAKMYRALAGLADHGQDPTPSRTPAGGSMVGTPVTVLRSIGESTEGGGLELRVNGG-DPEGPSSSKDAGNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADR-PKIGDSRPNQVKTWKHRTRNQLMFSPNLAASNDICRIEQAPTEAAQLLVKDGSTS 1018
            KK VLEE+EYV+ LG+IIE D+FP+  K+ +    L D    P    T    S     V+V  +  ES       +      D +G  S+K +     L  FVATHTSEDNE+F ELQEK  +  +RRY WA+D   D +G+     KL +L NG  +S E+R+  DAACA + PK  D RP+  +TW +R RN L+F P L A+ DIC++        QLL+++ S S
Sbjct:    3 KKVVLEEDEYVEALGQIIERDFFPDLPKLKKQTELLRDEEGLPWTDTTLRAASTSRGVVSVRSNANESGWDQPTPMVEQYALDEDGHDSTKASM---TLNHFVATHTSEDNESFNELQEKAVKDHQRRYHWAFDDDKD-KGD----PKLHLLTNGTWISKEQRQIADAACAPKGPK--DDRPSAPETWTYRARNPLLFPPELDATRDICQV-------GQLLLENSSKS 214          
BLAST of mRNA_Ecto-sp13_S_contig1553.4115.1 vs. uniprot
Match: A0A662XZJ0_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XZJ0_9STRA)

HSP 1 Score: 133 bits (335), Expect = 6.450e-28
Identity = 92/210 (43.81%), Postives = 120/210 (57.14%), Query Frame = 2
Query:  341 KTVLEEEEYVDRLGEIIEGDYFPNNAKMYRALAGLADHGQDPTPSRTPAGGSMVGTPVTVL-RSIGESTEGGGLELRVNGGDPEGPSSSKDAGNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADR-PKIGDSRPNQVKTWKHRTRNQLMFSPNLAASNDICRI 964
            K VLEEEEYV+ LGEIIE D+FP+   + R  A +      P+P+R P   +  GT   V  R+  E  E   +E        EG  +         L +FVATHTSEDNEAF ELQEK  E  +RRY WA+D   DG+G+     KL +L +G  +S ++R   D ACA + PK  D RP+  +TWK R RN L+F P+LA + DICR+
Sbjct:  444 KVVLEEEEYVEALGEIIERDFFPDLPSLKRQTA-VPSGWDQPSPAREP---TASGTNALVRSRTRNEDDEKSAVES-------EGVQNM-------TLNRFVATHTSEDNEAFNELQEKAIEDHQRRYHWAFDDN-DGKGD----PKLHLLTDGTWISKQQRHLADEACAPKGPK--DDRPSAPETWKFRARNPLLFPPDLATARDICRL 628          
BLAST of mRNA_Ecto-sp13_S_contig1553.4115.1 vs. uniprot
Match: G4YIQ7_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YIQ7_PHYSP)

HSP 1 Score: 127 bits (319), Expect = 7.390e-28
Identity = 94/236 (39.83%), Postives = 123/236 (52.12%), Query Frame = 2
Query:  338 KKTVLEEEEYVDRLGEIIEGDYFPNNAKMYRALAGLADH-GQDPTPSRTPAGGSMVGTPVTVLRSIGESTEGGGLELRV-NGGDP------EGPSSSKDAGNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADR-PKIGDSRPNQVKTWKHRTRNQLMFSPNLAASNDICRIEQAPTEAAQLLVKDGSTS 1018
            KK VLEEEEYVD LG+IIE D+FP+  K+ R    L +  G  P    T    +  G       S+  S  G G +      G+       E  ++  DA     L  FVATHTSEDNE+FAELQEK     +RRY WA+D     +       KL +L NG  +S E+R   D ACA + PK  D RP+  +TW+ R RN L+F P L A+ DIC++        QLL+++G  S
Sbjct:    3 KKVVLEEEEYVDALGQIIERDFFPDLPKLKRQTELLREEEGGVPWTDTTLRAANTRGN-----ASVRSSASGTGWDQPTPQSGESAVDATQESDAAEADAKASMTLNHFVATHTSEDNESFAELQEKAVIDHQRRYHWAFD-----DDKKRGDPKLHLLTNGTWISKEQRRIADEACAPKGPK--DDRPSAPETWRFRARNPLLFPPELEATRDICQVRSGN----QLLLENGVKS 222          
BLAST of mRNA_Ecto-sp13_S_contig1553.4115.1 vs. uniprot
Match: A0A6A4FV49_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4FV49_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.120e-27
Identity = 96/251 (38.25%), Postives = 124/251 (49.40%), Query Frame = 2
Query:  338 KKTVLEEEEYVDRLGEIIEGDYFPNNAKMYR--------------ALAGLADHGQDPTPSRTPAGGSMVGTPVTVLRSIGE-STEGGGLELRVNGGDPEGPSSSKDAGNGGA-----------LTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADR-PKIGDSRPNQVKTWKHRTRNQLMFSPNLAASNDICRIEQAPTEAAQLLVKDG 1009
            KK VLEEEEYV+ LG+IIE D+FP+  K+ +              AL  LA         R   G     T +    + G  S    G     +   P+   S  DA +  A           L  FVATHTSEDNE+F ELQ+K  +  +RRY WAYD     +       KL +L NG  +S E+R   D ACA + PK  D RP+  +TWK R RN L+F P L A+ DICR+E  P    QLL+++G
Sbjct:    3 KKVVLEEEEYVEALGQIIERDFFPDLPKLKQQTEVRSIIDSACINALKSLALIASFSCCERRRGGIPWTDTTLQAANARGNFSVRSSGSGTGWDHPTPQSDQSVADANHDNAAAEAEAKASMTLNHFVATHTSEDNESFVELQQKAVKDHQRRYHWAYD-----DDKERGDPKLHLLTNGTWISKEQRRIADQACAPKGPK--DDRPSAPETWKFRARNPLLFPPELEATRDICRVE--PGSGNQLLLENG 244          
BLAST of mRNA_Ecto-sp13_S_contig1553.4115.1 vs. uniprot
Match: A0A662XTQ1_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XTQ1_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.320e-27
Identity = 90/208 (43.27%), Postives = 118/208 (56.73%), Query Frame = 2
Query:  341 KTVLEEEEYVDRLGEIIEGDYFPNNAKMYRALAGLADHGQDPTPSRTPAGGSMVGTPVTVLRSIGESTEGGGLELRVNGGDPEGPSSSKDAGNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADR-PKIGDSRPNQVKTWKHRTRNQLMFSPNLAASNDICR 961
            K VLEEEEYV+ LGEIIE D+FP+   + R  A L+   Q P+P+R P         +   R+  E  E   +E        EG  +         L++FVATHTSEDNEAF ELQEK  E  +RRY WA+D    G+G+     KL +L +G  +S ++R   D ACA + PK  D RP+  +TWK R RN L+F P+LA + DICR
Sbjct:    5 KVVLEEEEYVEALGEIIERDFFPDLPSLKRQTAVLSSWDQ-PSPAREPTANRA--NALVRNRTRSEDDEKSAVES-------EGVQNM-------TLSRFVATHTSEDNEAFNELQEKAIEDHQRRYHWAFDDN-SGKGD----PKLHLLTDGTWISKQQRHLADEACAPKGPK--DDRPSAPETWKFRARNPLLFPPDLATTRDICR 188          
BLAST of mRNA_Ecto-sp13_S_contig1553.4115.1 vs. uniprot
Match: A0A329SZM5_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SZM5_9STRA)

HSP 1 Score: 131 bits (329), Expect = 2.470e-27
Identity = 95/238 (39.92%), Postives = 130/238 (54.62%), Query Frame = 2
Query:  338 KKTVLEEEEYVDRLGEIIEGDYFPNNAKMYRALAGLADH--GQDPTPSRTPAGGSMVGTPVTVLRSIGESTEGGGLEL--------RVNGGDPEGPSSSKDAGNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADR-PKIGDSRPNQVKTWKHRTRNQLMFSPNLAASNDICRIEQAPTEAAQLLVKDGSTS 1018
            KK VLEEEEYV+ LG+IIE D+FP+  K+ +    L D   G   T +   A  +  G       S+     G G +          ++    EG   +  A     L +FVATHTSEDNE+F ELQEK  +  +RRY WA+D   D E  +    KL +L NG  +S E+R+  D ACA + PK  D RP+  +TWK+R RN L+F P L A+ DIC+++  P   AQLL+++ S S
Sbjct:    3 KKVVLEEEEYVEALGQIIERDFFPDIPKLKKQTELLRDEEEGLPWTDTTLHAASTSRGN-----ASVRSGASGSGWDQPTPIVEQPAIDQAQDEGADDNAKASM--TLNRFVATHTSEDNESFNELQEKAVKDHQRRYHWAFDN--DKEKGDP---KLHLLTNGTWISKEQRQIADDACAPKGPK--DDRPSAPETWKYRARNPLLFPPELEATRDICQVKADP--GAQLLLENSSKS 224          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1553.4115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRU6_ECTSI0.000e+087.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A225X327_9STRA1.150e-2940.52Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A2P4YVG3_9STRA6.590e-2938.59Uncharacterized protein n=2 Tax=Phytophthora palmi... [more]
W2Q457_PHYPN1.590e-2840.09Uncharacterized protein n=9 Tax=Phytophthora TaxID... [more]
D0MY39_PHYIT4.400e-2840.61Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
A0A662XZJ0_9STRA6.450e-2843.81Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
G4YIQ7_PHYSP7.390e-2839.83Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A6A4FV49_9STRA1.120e-2738.25Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A662XTQ1_9STRA1.320e-2743.27Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A329SZM5_9STRA2.470e-2739.92Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1553contigEcto-sp13_S_contig1553:12377..15997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score1010.4
Seed ortholog evalue4.3e-292
Seed eggNOG ortholog2880.D8LRU6
Model size2804
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Nuclear protein Es2
EggNOG OGs2E6IQ@1,2SD85@2759
Ec32 ortholog descriptionNuclear protein DGCR14
Ec32 orthologEc-08_002490.1
Cds size2190
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462823.6504512-UTR-Ecto-sp13_S_contig1553:12376..124881681462823.6504512-UTR-Ecto-sp13_S_contig1553:12376..12488Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1553 12377..12488 +
1681462823.7058387-UTR-Ecto-sp13_S_contig1553:15495..159971681462823.7058387-UTR-Ecto-sp13_S_contig1553:15495..15997Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1553 15496..15997 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462823.665071-CDS-Ecto-sp13_S_contig1553:12488..130641681462823.665071-CDS-Ecto-sp13_S_contig1553:12488..13064Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1553 12489..13064 +
1681462823.6821582-CDS-Ecto-sp13_S_contig1553:13430..136251681462823.6821582-CDS-Ecto-sp13_S_contig1553:13430..13625Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1553 13431..13625 +
1681462823.693135-CDS-Ecto-sp13_S_contig1553:14076..154951681462823.693135-CDS-Ecto-sp13_S_contig1553:14076..15495Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1553 14077..15495 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1553.4115.1prot_Ecto-sp13_S_contig1553.4115.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1553 12489..15495 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1553.4115.1

>prot_Ecto-sp13_S_contig1553.4115.1 ID=prot_Ecto-sp13_S_contig1553.4115.1|Name=mRNA_Ecto-sp13_S_contig1553.4115.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=730bp
MTTNMPGDGARPEMITAVGRKFEVATPTTLARLEDPRAWHARGEGGIQRP
RPRPGSGGIALPMAPPLPKGRSVPLKKTVLEEEEYVDRLGEIIEGDYFPN
NAKMYRALAGLADHGQDPTPSRTPAGGSMVGTPVTVLRSIGESTEGGGLE
LRVNGGDPEGPSSSKDAGNGGALTKFVATHTSEDNEAFAELQEKDQEAFR
RRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADRPKI
GDSRPNQVKTWKHRTRNQLMFSPNLAASNDICRIEQAPTEAAQLLVKDGS
TSTTATTKRIVIKQSEDVVKRVARAATSTEESADGDSNESSGAAAVTAVA
VTEGGGSSSPSSDEALTATPYQPHQGEPENHSSEPPNAGGSTQRTEMDEP
LHCPPRIDSNKGVDDFGSSESRADDPPAPQRPAPPVSRGAVVVKANPKVI
QAHATRFPVPAPRKPSRGPWASPIEKPSSSRESVAELLAGTADSSGYEEV
PMTPSRVPGVDGDSPQITWGSIDGTPMILDPRATPLPEAGGGTMDVASFM
ETLGGVVGGVGQQQFEIKDLPPRDKLAHRLEAVDTRRKRAKVGAGAAVDG
RGTHTPAPATPMTPQTPGTGRQTPGTGKRTPRGGDTPAKGKGKGKAAAVT
PAARSLAARLAQRQSADTPFGGGLTPGRQRRRTNRSGGGAGANRGGLTPL
PASPAPAKGKSGAAEGKRSSLTDGLLTLK*
back to top

mRNA from alignment at Ecto-sp13_S_contig1553:12377..15997+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1553.4115.1 ID=mRNA_Ecto-sp13_S_contig1553.4115.1|Name=mRNA_Ecto-sp13_S_contig1553.4115.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3621bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1553:12377..15997+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTTTGGCCTGCCCGTCGTGAGCCAGCCTGTTCGACTGCTGTTGCAGTTGG GAGGAAAGCTGGAACAGCGGTGTACAGCGTTACAGCTAACTGCTGCTGCT GCTGTAGATGCGATGACCACCAACATGCCCGGAGACGGGGCGCGGCCAGA GATGATCACTGCGGTTGGGAGGAAATTCGAAGTGGCAACACCAACCACTC TTGCGCGGTTGGAGGATCCACGGGCCTGGCACGCACGCGGGGAGGGGGGA ATACAGCGCCCGAGACCTCGTCCCGGGAGTGGGGGAATCGCCCTCCCCAT GGCTCCACCACTACCAAAGGGGCGATCGGTTCCGCTGAAAAAGACGGTTC TCGAGGAGGAAGAGTACGTGGACCGCCTGGGGGAGATTATTGAAGGGGAC TACTTCCCCAACAACGCCAAGATGTATCGAGCCCTCGCTGGGCTCGCCGA CCATGGCCAAGACCCCACACCTTCCCGCACACCGGCAGGTGGCTCTATGG TAGGCACCCCTGTGACTGTACTACGGAGTATTGGCGAGTCTACTGAAGGG GGTGGCCTGGAGCTTCGAGTGAATGGGGGCGATCCGGAGGGACCATCGTC CTCGAAAGACGCGGGAAACGGCGGCGCCCTCACCAAGTTCGTTGCGACAC ATACGTCGGAGGATAACGAAGCCTTCGCCGAGCTACAGGTGAGAGGGGCG GCAAGATAATGATCTACTGTAACCTCTCCTCACAAAAAGGACGTGCTGTT AGTAACATATCCACAGCAGTCATCTGTTGGTTTCAGTCTTGTGGTGGCAC TGGGGTCCGTATCCTCACTGGAGTTCGTGGAGTTTCGATCCCTCCGCTTC TTCAGCTGCACCGATTTATGTGTTGTGCTCATTTGCCGTGAGACGGCGAG AGCTTGGAGTAAATGTGCTTCACATCAATGCCATCTGTTTACCTTACTTA GTCGGACCGAGTCTTTGCTAGATTACGGGTTTAGCAAGTGGCCCGTGTTT AATGTAAAGACAACTACAACAACAACAATCGCCTTGATTCGCATTCGATT TCAGGAGAAAGACCAGGAGGCTTTTCGAAGGCGATATTTCTGGGCTTACG ATACCACACCAGACGGGGAGGGCAACAACGCCACGTCTACCAAACTGTTG ATACTCCCCAACGGCAAGATGATGTCCGTCGAGCGGCGGGAGCAAATGGA CGCAGCTTGCGCAGATCGTCCAAAAATAGGAGATTCACGACCAAATCAGG TACGCGTCGCAAACTCGAGTGCAGTGCAGAGCACATTAGCGTGGCGCGTG GTAGACGGAGGTACTACTACCTCGTGCTTTTCCGAACCCCAAACATGCCA GGCTTTGTTTGGGATCACCACGTCGTTCACGTCCTTTGAGCCAGTCCTGT CACTCAAGATACCTTCGCACTTAGTCGCGCACATCGACAAACATTCCCCC TTCATGCAGTATTGCCACTCCCTTTTTTAAACCTGAAGATTGTGTGTACG GGGTGTTCTGCTGTCAATGTTATTGAACGGCACACCTCGTTGTTGGAGGA TCATAGCAATCGCTGCATCCAGCCGACGACATCACAGCTGTTGCTACAAG ATCGCCTCCGTACTCCGTCCACGTCGGACGGATGTAAATTCCCACGCGGT TATGAAGAAGTTGTGTTTCACCTGTTGTCGTATCTTGCTACTTGCTGCAG GTGAAGACTTGGAAGCACAGGACACGAAACCAGCTTATGTTTTCTCCGAA CTTGGCAGCGTCGAATGACATATGCAGAATCGAGCAAGCGCCTACGGAGG CTGCTCAGCTTCTTGTGAAGGACGGGTCAACATCGACGACGGCAACAACG AAGCGAATAGTGATCAAGCAATCGGAAGACGTCGTGAAGAGGGTGGCGCG GGCTGCAACATCTACCGAAGAATCTGCAGATGGCGACAGCAATGAGTCGT CCGGGGCAGCCGCAGTTACGGCAGTCGCGGTAACTGAAGGAGGTGGTTCT TCCTCGCCCTCTAGCGACGAAGCTCTCACCGCGACTCCCTACCAACCGCA CCAGGGCGAGCCTGAAAATCATTCTTCGGAGCCACCGAACGCAGGAGGAT CGACACAGCGGACCGAAATGGACGAACCTTTACATTGCCCGCCTCGCATA GACTCGAACAAAGGCGTTGATGATTTTGGATCATCGGAATCACGGGCCGA TGACCCGCCCGCACCACAACGACCAGCACCACCAGTTTCGCGCGGTGCGG TAGTCGTCAAAGCGAACCCCAAGGTTATTCAGGCCCATGCAACGAGGTTC CCGGTCCCCGCGCCACGGAAACCAAGCCGAGGGCCTTGGGCATCCCCAAT TGAGAAGCCGTCGTCGTCGCGGGAATCCGTTGCGGAGTTATTGGCGGGAA CGGCGGACTCATCGGGATACGAGGAAGTACCTATGACACCTTCGAGAGTA CCAGGCGTGGATGGAGACTCTCCGCAGATCACATGGGGTTCCATCGACGG CACTCCCATGATCCTCGACCCGCGCGCAACTCCTCTCCCAGAGGCCGGCG GGGGGACCATGGACGTGGCGAGCTTCATGGAGACACTCGGAGGCGTTGTT GGCGGGGTTGGCCAACAGCAGTTCGAGATTAAAGATCTCCCGCCGCGAGA CAAGCTTGCGCACCGCCTCGAGGCCGTAGACACTCGCCGGAAGCGAGCGA AGGTTGGGGCCGGCGCGGCCGTAGACGGAAGAGGGACGCACACGCCCGCG CCGGCAACACCGATGACCCCTCAGACGCCTGGCACAGGACGACAAACCCC CGGGACGGGAAAGCGAACGCCCAGGGGTGGGGACACACCTGCGAAGGGAA AGGGAAAGGGAAAGGCTGCGGCGGTGACGCCCGCCGCTCGAAGCCTGGCG GCGAGGCTAGCTCAGCGGCAGAGCGCCGACACACCTTTCGGCGGTGGGCT CACTCCTGGACGGCAAAGAAGGCGAACCAACCGCTCGGGGGGGGGGGCTG GTGCCAACAGAGGTGGGCTAACACCTCTGCCGGCTTCGCCTGCCCCGGCA AAGGGGAAGTCGGGCGCGGCTGAAGGCAAAAGATCGTCGCTTACGGATGG TCTGTTGACCTTGAAGTGAATCAACGCGTTTCCGTTCGTTGTTACAATAC GGTGATGTTGCCGTTGGTGGAGTGGTGTTGATGACATGTACCCTCGCTGG TGGGGGTTTACGCTGTCACTGCCCAGAGGACGGCTAGCGCAGAATAGGGT CCAGTAAAAAGAAGGTAGAGAGCGTCTGTAAATTGAGGTTGATTTTTGAG CGTTTGCCGCAGAAAGTGAAGAATATTCTTCCTCGAAAATCGTAGCGGTG TCGCTGAAGGATGGCGGTTCTTTTGCTAGATGAGGGGAGGATTTACCGCT CTTTTGGTGGCACGAACAGCGAATCGGAGCTGGATTGCAACGCTGGTTTG TCCTGTGTGTGAAACGTATGCAGCAACTTGATCACACACCCACAAGCTTT GTTGTGTGTGGTATTCACTTCACACTTCTCCGGTAACAAGCACAATCGGT TGTACGTCAATACCCCCCAAATCTCACGCTGGCGAAGGCGTTGCTTATGA ATCACAAGCTGTTCTACCATG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1553:12377..15997+

>mRNA_Ecto-sp13_S_contig1553.4115.1 ID=mRNA_Ecto-sp13_S_contig1553.4115.1|Name=mRNA_Ecto-sp13_S_contig1553.4115.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2190bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1553:12377..15997+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCACCAACATGCCCGGAGACGGGGCGCGGCCAGAGATGATCACTGC
GGTTGGGAGGAAATTCGAAGTGGCAACACCAACCACTCTTGCGCGGTTGG
AGGATCCACGGGCCTGGCACGCACGCGGGGAGGGGGGAATACAGCGCCCG
AGACCTCGTCCCGGGAGTGGGGGAATCGCCCTCCCCATGGCTCCACCACT
ACCAAAGGGGCGATCGGTTCCGCTGAAAAAGACGGTTCTCGAGGAGGAAG
AGTACGTGGACCGCCTGGGGGAGATTATTGAAGGGGACTACTTCCCCAAC
AACGCCAAGATGTATCGAGCCCTCGCTGGGCTCGCCGACCATGGCCAAGA
CCCCACACCTTCCCGCACACCGGCAGGTGGCTCTATGGTAGGCACCCCTG
TGACTGTACTACGGAGTATTGGCGAGTCTACTGAAGGGGGTGGCCTGGAG
CTTCGAGTGAATGGGGGCGATCCGGAGGGACCATCGTCCTCGAAAGACGC
GGGAAACGGCGGCGCCCTCACCAAGTTCGTTGCGACACATACGTCGGAGG
ATAACGAAGCCTTCGCCGAGCTACAGGAGAAAGACCAGGAGGCTTTTCGA
AGGCGATATTTCTGGGCTTACGATACCACACCAGACGGGGAGGGCAACAA
CGCCACGTCTACCAAACTGTTGATACTCCCCAACGGCAAGATGATGTCCG
TCGAGCGGCGGGAGCAAATGGACGCAGCTTGCGCAGATCGTCCAAAAATA
GGAGATTCACGACCAAATCAGGTGAAGACTTGGAAGCACAGGACACGAAA
CCAGCTTATGTTTTCTCCGAACTTGGCAGCGTCGAATGACATATGCAGAA
TCGAGCAAGCGCCTACGGAGGCTGCTCAGCTTCTTGTGAAGGACGGGTCA
ACATCGACGACGGCAACAACGAAGCGAATAGTGATCAAGCAATCGGAAGA
CGTCGTGAAGAGGGTGGCGCGGGCTGCAACATCTACCGAAGAATCTGCAG
ATGGCGACAGCAATGAGTCGTCCGGGGCAGCCGCAGTTACGGCAGTCGCG
GTAACTGAAGGAGGTGGTTCTTCCTCGCCCTCTAGCGACGAAGCTCTCAC
CGCGACTCCCTACCAACCGCACCAGGGCGAGCCTGAAAATCATTCTTCGG
AGCCACCGAACGCAGGAGGATCGACACAGCGGACCGAAATGGACGAACCT
TTACATTGCCCGCCTCGCATAGACTCGAACAAAGGCGTTGATGATTTTGG
ATCATCGGAATCACGGGCCGATGACCCGCCCGCACCACAACGACCAGCAC
CACCAGTTTCGCGCGGTGCGGTAGTCGTCAAAGCGAACCCCAAGGTTATT
CAGGCCCATGCAACGAGGTTCCCGGTCCCCGCGCCACGGAAACCAAGCCG
AGGGCCTTGGGCATCCCCAATTGAGAAGCCGTCGTCGTCGCGGGAATCCG
TTGCGGAGTTATTGGCGGGAACGGCGGACTCATCGGGATACGAGGAAGTA
CCTATGACACCTTCGAGAGTACCAGGCGTGGATGGAGACTCTCCGCAGAT
CACATGGGGTTCCATCGACGGCACTCCCATGATCCTCGACCCGCGCGCAA
CTCCTCTCCCAGAGGCCGGCGGGGGGACCATGGACGTGGCGAGCTTCATG
GAGACACTCGGAGGCGTTGTTGGCGGGGTTGGCCAACAGCAGTTCGAGAT
TAAAGATCTCCCGCCGCGAGACAAGCTTGCGCACCGCCTCGAGGCCGTAG
ACACTCGCCGGAAGCGAGCGAAGGTTGGGGCCGGCGCGGCCGTAGACGGA
AGAGGGACGCACACGCCCGCGCCGGCAACACCGATGACCCCTCAGACGCC
TGGCACAGGACGACAAACCCCCGGGACGGGAAAGCGAACGCCCAGGGGTG
GGGACACACCTGCGAAGGGAAAGGGAAAGGGAAAGGCTGCGGCGGTGACG
CCCGCCGCTCGAAGCCTGGCGGCGAGGCTAGCTCAGCGGCAGAGCGCCGA
CACACCTTTCGGCGGTGGGCTCACTCCTGGACGGCAAAGAAGGCGAACCA
ACCGCTCGGGGGGGGGGGCTGGTGCCAACAGAGGTGGGCTAACACCTCTG
CCGGCTTCGCCTGCCCCGGCAAAGGGGAAGTCGGGCGCGGCTGAAGGCAA
AAGATCGTCGCTTACGGATGGTCTGTTGACCTTGAAGTGA
back to top