mRNA_Ecto-sp13_S_contig15503.4105.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15503.4105.1
Unique NamemRNA_Ecto-sp13_S_contig15503.4105.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15503.4105.1 vs. uniprot
Match: D8LJ70_ECTSI (Similar to chromatin modifying protein 2B n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ70_ECTSI)

HSP 1 Score: 352 bits (903), Expect = 9.040e-122
Identity = 198/203 (97.54%), Postives = 199/203 (98.03%), Query Frame = 1
Query:    1 AAAKDAKRAVRSGERDLDKEIRNLDRSEKSLVAEIKKTAKGGNQGATRTLAKQLVQLRAQKEQLYSARAKLAGVGNAATTAATSASLAGVMGNVAGVMKKVNEAVSTEETAKIMQQFAVENEKMNMSEEMMDDALIDAFDGEGVEEEADGVVGQVLAELGLEMDGKMVDAPTNTPTGVARPSAVEDTKLDAKTEELLAQLGAL 609
            AAAKDAKRAVRSGERDLDKEIRNLDRSEKSLVAEIKKTAKGGNQGATRTLAKQLVQLRAQK+QLYSARAKLAGVGNAATTAATSASLAGVMGNVAGVMKKVNEAVSTEETAKIMQQFAVENEKMNMSEEMMDDALIDAFDGEGVEEEADGVVGQVLAELGLEMDGKMVDAPTNTP GVARPS  ED KLDAKTEELLAQLGAL
Sbjct:   11 AAAKDAKRAVRSGERDLDKEIRNLDRSEKSLVAEIKKTAKGGNQGATRTLAKQLVQLRAQKDQLYSARAKLAGVGNAATTAATSASLAGVMGNVAGVMKKVNEAVSTEETAKIMQQFAVENEKMNMSEEMMDDALIDAFDGEGVEEEADGVVGQVLAELGLEMDGKMVDAPTNTPAGVARPSEAEDAKLDAKTEELLAQLGAL 213          
BLAST of mRNA_Ecto-sp13_S_contig15503.4105.1 vs. uniprot
Match: A0A835YLS1_9STRA (Chromatin modifying protein-like protein 2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLS1_9STRA)

HSP 1 Score: 186 bits (471), Expect = 4.150e-56
Identity = 109/202 (53.96%), Postives = 143/202 (70.79%), Query Frame = 1
Query:    7 AKDAKRAVRSGERDLDKEIRNLDRSEKSLVAEIKKTA-KGGNQGATRTLAKQLVQLRAQKEQLYSARAKLAGVGNAATTAATSASLAGVMGNVAGVMKKVNEAVSTEETAKIMQQFAVENEKMNMSEEMMDDALIDAFDGEGVEEEADGVVGQVLAELGLEMDGKMVDAPTNTPTGVARPSAVEDTKLDAKTEELLAQLGAL 609
            A+ AKR VR GERD+++E+RNLDR EK L+ +IKKTA K G + ATR LA QLV LR Q+++LY+ ++ +  VG   T  A  A++AGVMG+V G MK VN  +S +E A ++QQFA+++E M M EE+MDDAL DAFDG+GVE E D +V QVL E+GL+M  KM DAPT  P    +  A +D+ LD + EELL QL AL
Sbjct:   12 ARSAKRQVRQGERDVERELRNLDRVEKQLIIDIKKTARKPGGEKATRNLAGQLVGLRKQRDKLYTMKSTITAVGYQTTAIAGQAAMAGVMGSVTGAMKDVNAQLSPQEMAAVLQQFALQSETMGMREELMDDALTDAFDGDGVEAETDAIVDQVLTEIGLDMTSKMADAPTGKPAA-GQQLAQDDSMLDQRAEELLKQLQAL 212          
BLAST of mRNA_Ecto-sp13_S_contig15503.4105.1 vs. uniprot
Match: A0A7S2EVL5_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EVL5_TRICV)

HSP 1 Score: 150 bits (379), Expect = 4.450e-42
Identity = 99/209 (47.37%), Postives = 129/209 (61.72%), Query Frame = 1
Query:    1 AAAKDAKRAVRSGERDLDKEIRNLDRSEKSLVAEIKKTAKG----GNQGATRTLAKQLVQLRAQKEQLYSARAKLAGVGNAATTAATSASLAGVMGNVAGVMKKVNEAVSTEETAKIMQQFAVENEKMNMSEEMMDDALIDAFDGEGVEEEADGVVGQVLAELGLEMDGKMV--DAPTNTPTGVARPSAVEDTKLDAKTEELLAQLGAL 609
            AA +  KR VR  +RD+D+EIR LDR+E  ++AEIKK AK     GN  A   LAKQLVQ+R QKE+++S +A L  VG  AT  A+  + A  +GNV   M   N ++      KIM +F  +NE M + EE+MDDAL DAFD + VEEEA+ V  QVLAELG+E+D KMV  DAP   P G    +  ++   DA   +L A+L AL
Sbjct:   16 AAKRSTKREVRGAQRDMDREIRELDRTEAQVLAEIKKRAKAPGVSGNDRALSALAKQLVQIRKQKEKMFSTKANLGAVGMQATAMASQVAAASAVGNVTKAMGTANASIDAAAVGKIMTEFQRQNEIMGVREELMDDALTDAFDADEVEEEAEAVTNQVLAELGVELDSKMVGLDAPKQKPVGEEMNAEEKEALYDA-LPDLRARLDAL 223          
BLAST of mRNA_Ecto-sp13_S_contig15503.4105.1 vs. uniprot
Match: A0A4D9D707_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D707_9STRA)

HSP 1 Score: 146 bits (368), Expect = 1.430e-40
Identity = 84/189 (44.44%), Postives = 124/189 (65.61%), Query Frame = 1
Query:   10 KDAKRAVRSGERDLDKEIRNLDRSEKSLVAEIKKTAKGGNQGATRTLAKQLVQLRAQKEQLYSARAKLAGVGNAATTAATSASLAGVMGNVAGVMKKVNEAVSTEETAKIMQQFAVENEKMNMSEEMMDDALIDAFDGEGVEEEADGVVGQVLAELGLEMDGKMVDAPTNT-PTGVARPSAVEDTKLDA 573
            ++ KR +R  ERD+D+E++NL R E  L+ +IKK A     G  + +AK LVQLRAQK++L + +  + GVG  A+   + A++   MG + GVM  +NE +   +T+K+M +FA +NE MN+ E+++DDAL+DAFDG+GVEEEA+ VV QVL E+GLE+  KM D P      GV + S  +   L+A
Sbjct:   14 RETKREIRHNERDMDRELQNLAREEAKLIHDIKKMAANNQHGPLKVMAKNLVQLRAQKDKLITMKTTMTGVGYKASLMHSQAAVGQAMGRMTGVMGDMNEMMDATKTSKVMTEFARQNEYMNVKEDLLDDALMDAFDGDGVEEEAESVVNQVLEEIGLELGSKMADVPVGKLRDGVDKESIEDKAALEA 202          
BLAST of mRNA_Ecto-sp13_S_contig15503.4105.1 vs. uniprot
Match: A0A1Z5KR86_FISSO (Charged multivesicular body protein 2B n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KR86_FISSO)

HSP 1 Score: 136 bits (342), Expect = 1.330e-36
Identity = 87/195 (44.62%), Postives = 125/195 (64.10%), Query Frame = 1
Query:   34 SGERDLDKEIRNLDRSEKSLVAEIK---KTAKGGNQGATRTLAKQLVQLRAQKEQLYSARAKLAGVGNAATTAATSASLAGVMGNVAGVMKKVNEAVSTEETAKIMQQFAVENEKMNMSEEMMDDALIDAFDGEGVEEEADGVVGQVLAELGLEMDGKMVDAPTNTPTGVARPSAVEDTKLDAKTEELLAQLGAL 609
            S + DLD+EIR LDR EK++  E+K   KTA   N    + LAKQ+VQ+R Q+ +L++A+A++  +G  AT AA+  +    MG++   MK  N+ +  ++T KIM +F  ENE++ + EEMMDD L+DAFD EG+EEEAD +  QVLAELG+E+D +MV    N P    +  A E+  LD    +L A+L AL
Sbjct:   26 SNQXDLDREIRELDRQEKTITVELKQRAKTASSANDPTLKALAKQMVQVRQQRNKLHTAKAQVGAMGMHATVAASQIAAVTAMGSITESMKVANKQMDIKKTTKIMAEFQRENERIQVKEEMMDDVLMDAFDSEGMEEEADQLTNQVLAELGVELDQQMVGL--NAPA--KKLQAEEEEVLDEVLPDLKARLDAL 216          
BLAST of mRNA_Ecto-sp13_S_contig15503.4105.1 vs. uniprot
Match: A0A1E7EY94_9STRA (Snf7-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EY94_9STRA)

HSP 1 Score: 135 bits (339), Expect = 5.600e-36
Identity = 88/190 (46.32%), Postives = 119/190 (62.63%), Query Frame = 1
Query:   61 IRNLDRSEKSLVAEIKKTAK---GGNQGATRTLAKQLVQLRAQKEQLYSARAKLAGVGNAATTAATSASLAGVMGNVAGVMKKVNEAVSTEETAKIMQQFAVENEKMNMSEEMMDDALIDAFDGEGVEEEADGVVGQVLAELGLEMDGKMVD--APTNTPTGVARP--SAVEDTKLDAKTEELLAQLGAL 609
            +R LDR E  +  E+K+ AK        A   LAKQLVQ+R Q+E++ +A+A +  VG  AT  AT  + A  +GNV+  MK  NEA++ +ET KI+ +F  ENEK+ + +EMMDDAL+DAFD E VEEEA+ +  QVLAELG+EMD KMV   AP+   +  A    S  E   LDA   +L ++L AL
Sbjct:   42 LRELDRQESQITKELKQRAKLTSSSKDPALAALAKQLVQIRKQREKIMTAKAHIGAVGMNATAMATQVAAASAIGNVSKAMKITNEAMNVQETTKILHEFQRENEKLEVKQEMMDDALMDAFDSEDVEEEAEELTNQVLAELGVEMDSKMVGLTAPSKIVSSSAEQNMSTEEQAALDAMLPDLKSRLDAL 231          
BLAST of mRNA_Ecto-sp13_S_contig15503.4105.1 vs. uniprot
Match: A0A7S2VFB0_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VFB0_9STRA)

HSP 1 Score: 134 bits (338), Expect = 5.880e-36
Identity = 90/192 (46.88%), Postives = 121/192 (63.02%), Query Frame = 1
Query:   49 LDKEIRNLDRSEKSLVAEIKKTAKGGNQGAT---RTLAKQLVQLRAQKEQLYSARAKLAGVGNAATTAATSASLAGVMGNVAGVMKKVNEAVSTEETAKIMQQFAVENEKMNMSEEMMDDALIDAFDGEGVEEEADGVVGQVLAELGLEMDGKMV--DAPTNTPTGVARPSAVEDTKLDAKTEELLAQLGAL 609
            +D+EIR LDR EK +  E+K+ AKG N  +    +TLAKQLVQ+R Q+ +L  A+A+L  +G  A   A+  +    +G+V   MK  N+ ++ +ET KIM +F  ENE++ +  EMMDD L+DAFD EG+EEEAD V  QVLAELG+EMD +MV  DAP  T  G     A  D   DA   +L A+L AL
Sbjct:   31 MDREIRELDRQEKQITMELKQRAKGANSSSDPTLKTLAKQLVQVRQQRSKLVGAKAQLGAMGMHAQVTASQVAAVQAVGSVTDAMKVANKQLNVKETTKIMTEFQRENERLAVKSEMMDDVLMDAFDSEGMEEEADQVTNQVLAELGVEMDQQMVGLDAP-KTKVGAEEVPAETDPIEDA-LPDLRARLNAL 220          
BLAST of mRNA_Ecto-sp13_S_contig15503.4105.1 vs. uniprot
Match: A0A7S1BMU4_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BMU4_9STRA)

HSP 1 Score: 134 bits (337), Expect = 8.310e-36
Identity = 85/208 (40.87%), Postives = 132/208 (63.46%), Query Frame = 1
Query:    4 AAKDAKRAVRSGERDLDKEIRNLDRSEKSLVAEIKKTAKGG----NQGATRTLAKQLVQLRAQKEQLYSARAKLAGVGNAATTAATSASLAGVMGNVAGVMKKVNEAVSTEETAKIMQQFAVENEKMNMSEEMMDDALIDAFDGEGVEEEADGVVGQVLAELGLEMDGKM--VDAPTNTPTGVARPSAVEDTKLDAKTEELLAQLGAL 609
            AA++ KR VRS +R +D+E+R L+R E++L+A+IKK AK G    N  A + L+KQLV  R QK++L  +++++  +   AT  ++  + A  +G V   M   N+AV  ++ +  M +F  +NE M++ E++ +DAL DAFDG+ VEEEAD V  Q+LAELGLE+ GKM  ++ P+  P  VA    VED  + +   +L ++L AL
Sbjct:   14 AARETKREVRSAQRGIDRELRELERQERTLLADIKKRAKTGGITKNDSALKALSKQLVHTRGQKDRLQESKSQIGSMALKATAMSSQVAAAQAVGKVTQAMGNANQAVDIKKLSAQMGEFMRQNEMMDLKEDLFNDALADAFDGDEVEEEADAVTDQILAELGLELSGKMEGLNVPSAAPP-VAEEEVVEDDGISSNIPDLQSRLNAL 220          
BLAST of mRNA_Ecto-sp13_S_contig15503.4105.1 vs. uniprot
Match: A0A024UK03_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UK03_9STRA)

HSP 1 Score: 125 bits (314), Expect = 2.020e-32
Identity = 79/200 (39.50%), Postives = 114/200 (57.00%), Query Frame = 1
Query:    7 AKDAKRAVRSGERDLDKEIRNLDRSEKSLVAEIKKTAKGGNQGATRTLAKQLVQLRAQKEQLYSARAKLAGVGNAATTAATSASLAGVMGNVAGVMKKVNEAVSTEETAKIMQQFAVENEKMNMSEEMMDDALIDAFDGEGVEEEADGVVGQVLAELGLEMDGKMVDAPTNTPTGVARPSAV--EDTKLDAKTEELLAQL 600
            AK+AKR +   +R+L++E   L+R EK L+A+IKK AK GN G T+ LAKQL+QLR QK+++   ++ L  +G   T+ A   ++   +      M   ++ +      K++  F  ++E M M EEM+DD LIDAFD E VE E D VV QVL E+GL++   M DAPT      A   A+  + T L   T+   A L
Sbjct:   15 AKEAKRGIAQSQRELEREKMALERQEKQLIADIKKAAKEGNTGGTKILAKQLIQLRQQKDKMTMLKSNLGSIGLQTTSMAAQMTMVAAIEKTTKTMASTSKQMDMNRFQKVIMDFEKQSEMMGMREEMLDDTLIDAFDDEEVEAEGDAVVDQVLTEIGLDLGSLMADAPTRQANATAAMDALLPDVTLLPTPTKVTAASL 214          
BLAST of mRNA_Ecto-sp13_S_contig15503.4105.1 vs. uniprot
Match: A0A067D5G0_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D5G0_SAPPC)

HSP 1 Score: 125 bits (313), Expect = 2.500e-32
Identity = 76/172 (44.19%), Postives = 109/172 (63.37%), Query Frame = 1
Query:    7 AKDAKRAVRSGERDLDKEIRNLDRSEKSLVAEIKKTAKGGNQGATRTLAKQLVQLRAQKEQLYSARAKLAGVGNAATTAATSASLAGVMGNVAGVMKKVNEAVSTEETAKIMQQFAVENEKMNMSEEMMDDALIDAFDGEGVEEEADGVVGQVLAELGLEMDGKMVDAPTNT 522
            A++AKR +  G+RDL++E   L+R EK L+ +IKK AK GNQ  T+ LAKQLVQ+RAQKE+L   +  L G+G  A+  A   ++   M      M   N+ +      K + +F  ++E M+M +EMM+D LIDAFD + VEE  D VV QVLAE+GL++  ++ DAPT +
Sbjct:   16 AREAKREIAHGQRDLEREKMVLERQEKQLILDIKKAAKDGNQAGTKILAKQLVQVRAQKEKLMVMKVSLGGIGMQASAMAAQQTMVATMEKTTKTMVAANKQMDMSRIQKTLMEFEKQSELMSMGQEMMEDTLIDAFDDDEVEE--DLVVDQVLAEIGLDLHTQLADAPTQS 185          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15503.4105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJ70_ECTSI9.040e-12297.54Similar to chromatin modifying protein 2B n=2 Tax=... [more]
A0A835YLS1_9STRA4.150e-5653.96Chromatin modifying protein-like protein 2B n=1 Ta... [more]
A0A7S2EVL5_TRICV4.450e-4247.37Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A4D9D707_9STRA1.430e-4044.44Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A1Z5KR86_FISSO1.330e-3644.62Charged multivesicular body protein 2B n=2 Tax=Fis... [more]
A0A1E7EY94_9STRA5.600e-3646.32Snf7-domain-containing protein n=1 Tax=Fragilariop... [more]
A0A7S2VFB0_9STRA5.880e-3646.88Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S1BMU4_9STRA8.310e-3640.87Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A024UK03_9STRA2.020e-3239.50Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A067D5G0_SAPPC2.500e-3244.19Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15503contigEcto-sp13_S_contig15503:756..3224 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score356.7
Seed ortholog evalue7.3e-96
Seed eggNOG ortholog2880.D8LJ70
Preferred nameCHMP2B
Model size612
KEGG koko:K12192
KEGG Pathwayko04144,ko04217,map04144,map04217
KEGG ModuleM00412
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000815,GO:0000819,GO:0000920,GO:0003008,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005829,GO:0006810,GO:0006914,GO:0006996,GO:0006997,GO:0007032,GO:0007034,GO:0007041,GO:0007049,GO:0007059,GO:0007080,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0008333,GO:0009056,GO:0009987,GO:0010008,GO:0010256,GO:0010564,GO:0010824,GO:0012505,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0019058,GO:0019068,GO:0019725,GO:0019904,GO:0022402,GO:0022411,GO:0022607,GO:0031090,GO:0031410,GO:0031982,GO:0032501,GO:0032509,GO:0032510,GO:0032886,GO:0032984,GO:0032991,GO:0033043,GO:0036257,GO:0036258,GO:0036452,GO:0039702,GO:0040012,GO:0040017,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043900,GO:0043902,GO:0043903,GO:0043933,GO:0044085,GO:0044087,GO:0044237,GO:0044248,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0046605,GO:0046755,GO:0046907,GO:0048284,GO:0048285,GO:0048518,GO:0048524,GO:0050000,GO:0050789,GO:0050792,GO:0050794,GO:0050877,GO:0050890,GO:0051128,GO:0051179,GO:0051234,GO:0051276,GO:0051301,GO:0051303,GO:0051310,GO:0051493,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0051726,GO:0051783,GO:0060236,GO:0060249,GO:0061024,GO:0061025,GO:0061763,GO:0061919,GO:0065007,GO:0065008,GO:0070050,GO:0070507,GO:0070925,GO:0071840,GO:0071985,GO:0090169,GO:0090174,GO:0090224,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098813,GO:0140014,GO:1901673,GO:1902115,GO:1902186,GO:1902188,GO:1903047,GO:1903900,GO:1903902,GO:1904896,GO:1904903
Exons4
EggNOG free text desc.vacuolar transport
EggNOG OGsCOG5491@1,KOG3231@2759
Ec32 ortholog descriptionSnf7 family protein
Ec32 orthologEc-02_004980.1
Cds size612
COG Functional cat.N
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462822.9532106-CDS-Ecto-sp13_S_contig15503:755..9531681462822.9532106-CDS-Ecto-sp13_S_contig15503:755..953Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15503 756..953 -
1681462822.9667225-CDS-Ecto-sp13_S_contig15503:1797..19581681462822.9667225-CDS-Ecto-sp13_S_contig15503:1797..1958Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15503 1798..1958 -
1681462822.982888-CDS-Ecto-sp13_S_contig15503:2182..23031681462822.982888-CDS-Ecto-sp13_S_contig15503:2182..2303Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15503 2183..2303 -
1681462822.9936807-CDS-Ecto-sp13_S_contig15503:3092..32241681462822.9936807-CDS-Ecto-sp13_S_contig15503:3092..3224Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15503 3093..3224 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15503.4105.1prot_Ecto-sp13_S_contig15503.4105.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15503 756..3224 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15503.4105.1

>prot_Ecto-sp13_S_contig15503.4105.1 ID=prot_Ecto-sp13_S_contig15503.4105.1|Name=mRNA_Ecto-sp13_S_contig15503.4105.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=204bp
AAAKDAKRAVRSGERDLDKEIRNLDRSEKSLVAEIKKTAKGGNQGATRTL
AKQLVQLRAQKEQLYSARAKLAGVGNAATTAATSASLAGVMGNVAGVMKK
VNEAVSTEETAKIMQQFAVENEKMNMSEEMMDDALIDAFDGEGVEEEADG
VVGQVLAELGLEMDGKMVDAPTNTPTGVARPSAVEDTKLDAKTEELLAQL
GAL*
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mRNA from alignment at Ecto-sp13_S_contig15503:756..3224-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15503.4105.1 ID=mRNA_Ecto-sp13_S_contig15503.4105.1|Name=mRNA_Ecto-sp13_S_contig15503.4105.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2469bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15503:756..3224- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGCGGCGAAGGATGCTAAACGGGCGGTACGGTCGGGGGAGCGAGACCT GGACAAGGAGATACGGAACCTTGACAGGAGCGAGAAGTCGCTGGTAGCAG AGATCAAGAAGACTGCCAAGGGCGGGAACCAAGTGAGGAGACGAGCGGTC GCTGCAGTGACCGCTGGGTTATACTTTTGAGAGCGGGTTTGCTGCAATAG TACTGGGTTAATTCTTACCTTGGCATCAATTTTCCGGCCCAACTCCAAGT CCAAACAGTCAGTCGACTGCTATCTGTACATAGCTCGTCCACATGTTGGC AATAGTACTATAGGAAACCAGTTTGAATTTGAGTTAGAGCGCGATGGGTA TGGTCACCGGGAGAAAACACACACCGAAACTAGGTGAAAAAAAGTGTTGC GGGCGAAGACGACTCGCGCATGATATTCTTATTGTGGGTTCTATCGGCGC CGAGCTCACGCCGCACGTCACCATATGTTTCCCCCGCTCTGCTCCTTTGA GGAACATTATAGTCCCCGGGAGGACACGATTCGCGGAACGGGGTCACGCA GGTTGCTCGCAAGTGCAAGGCAAACTTGATACTGGGACAGAACCATCTAC TGCTGCGTTATGTGTATAGGGGGGCAGTTTGTTGCGGTGTGCACATAGCA GATGGGAGCGCGTGACACTATTGCGCGCTTCCGCGGTGGAACCCCTCCTC GCTCACTCCCGATTGCGAGAACAGTTCGAAGGATAGGTGGACCTCGAGGA TTAGAAGGAGCGCCTCGGACTGGTGCTCGAGAAGAGATCCTTTGTTGGAC GGTCATACGTATCGTTGAGCAGGACGAAAGCGTGCCCAATATGACCATCT GTTGACGTTTTTTTTGCCAATACCACCAACAACAACAACGACCTCCATCC CGCCGTGCCACTCCCATCCAGGGCGCAACTCGAACACTCGCGAAGCAGCT TGTGCAGCTACGAGCGCAAAAGGAACAGTTGTACTCGGCAAGGGCTAAGT TAGCGGGAGTTGGGAATGCAGCAACAACGGCGGCGACGTCAGGTACACTT CAGAATACTTGTTATTTTGCGCTTTGGAATGTGTTCTCTTTAATATATAC ATTTTTCTAGAATCTGCTTCACGTATCCTGCGCGTGCTTGGGGGCAAATC GAGTACCAAAAAACGGCTGCAGTCGGCTTCCAAATTTTCGTTGGTTTGTC TTCTGAGTCGCGTCACGCACTTATGTTGCTCCACGTGTACCAACTGCTTC CGCCAAATTCTTCCAGCTTCGCTGGCCGGGGTTATGGGCAACGTGGCGGG CGTGATGAAAAAGGTGAACGAGGCGGTTAGCACGGAGGAGACGGCGAAGA TCATGCAGCAGTTTGCCGTGGAGAACGAGAAGATGAACATGTCGGAGGAG ATGATGGATGACGCGCTCATCGACGCGGTGAGATTTTTAGCGGACGGAGG CGTTTGTTCCTGTCGGCGATGCCGTTTCGTGGTTTTCAGAACGTGGCAGT GTCTACCTTCGGGAAACGGTGTTCAGAGAGATAATGTTTTTTCTGCTAGT GTCTACCGGGAACGGCATGCCGAGGGATACCGTTACTGCAAAAATGCTGA TATGTTGTTCACATACACACACCACACCCAATTTTTGTGATTAGTCCCCA TCGCTCCCGGCCAGTATGGTTGGCGGAACAACGCAACTATAGTAGACGAG GCAAGGAATAGGCCACGTGTTGCAGCACAACTCTTTTACCGTCATACAAC GTTTTTTCCCTACCCACGCTTGCTGGGCATGCCACCAGGCCTCAACCCTT TTCCAAGTGCTGCCCACCCACGTCCTTCGCATTTTCGAATCTACGCCCTC CCCCCCCCCTCTTGGCGTCACCCCACCCTCCGACTGCTACCGACCGGTTC GTGCTGGCTCTTCTGTCCCCCGCGCCCGCATGGATTCTTTTTAGCGTCTT TCCTCCATTCTACGTTCGTCCCCTTATGTACTGGCTGTACCGCTACCCTC CCACTACCCGCCCACCTGTCCCGTATTGACCTCTAGCCAGAAGCCTCCAC AGAGTTTTCACGTTAAGTAAACCGGTTGGATAGATCATGCTATCGAGGGA GGTGGGTTAGGGTTAGGGAGTAGGGATGCGTAACCCCTCCCTGGTTCTCT TTCCTCGTGAACTTGATTTCTCGCCAAGGCGGTCGGTCACCTCTAACAGT GTAGTGTCTACCCGCTCGCGTGCGCGCCTTGACGCCATCCTTCCCATCCG CGCACGCCTTGTCCCCGCTAGTTCGACGGCGAGGGTGTAGAAGAGGAAGC GGACGGAGTCGTTGGCCAGGTGCTCGCCGAGCTCGGTCTAGAGATGGACG GCAAGATGGTGGACGCCCCGACCAACACCCCGACCGGCGTGGCGAGACCA TCGGCGGTGGAGGATACCAAGCTGGACGCCAAGACCGAGGAGTTGTTAGC GCAACTCGGCGCTTTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15503:756..3224-

>mRNA_Ecto-sp13_S_contig15503.4105.1 ID=mRNA_Ecto-sp13_S_contig15503.4105.1|Name=mRNA_Ecto-sp13_S_contig15503.4105.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=612bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15503:756..3224- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGCGGCGAAGGATGCTAAACGGGCGGTACGGTCGGGGGAGCGAGACCT
GGACAAGGAGATACGGAACCTTGACAGGAGCGAGAAGTCGCTGGTAGCAG
AGATCAAGAAGACTGCCAAGGGCGGGAACCAAGGCGCAACTCGAACACTC
GCGAAGCAGCTTGTGCAGCTACGAGCGCAAAAGGAACAGTTGTACTCGGC
AAGGGCTAAGTTAGCGGGAGTTGGGAATGCAGCAACAACGGCGGCGACGT
CAGCTTCGCTGGCCGGGGTTATGGGCAACGTGGCGGGCGTGATGAAAAAG
GTGAACGAGGCGGTTAGCACGGAGGAGACGGCGAAGATCATGCAGCAGTT
TGCCGTGGAGAACGAGAAGATGAACATGTCGGAGGAGATGATGGATGACG
CGCTCATCGACGCGTTCGACGGCGAGGGTGTAGAAGAGGAAGCGGACGGA
GTCGTTGGCCAGGTGCTCGCCGAGCTCGGTCTAGAGATGGACGGCAAGAT
GGTGGACGCCCCGACCAACACCCCGACCGGCGTGGCGAGACCATCGGCGG
TGGAGGATACCAAGCTGGACGCCAAGACCGAGGAGTTGTTAGCGCAACTC
GGCGCTTTGTGA
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