mRNA_Ecto-sp13_S_contig15503.4105.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig15503.4105.1 vs. uniprot
Match: D8LJ70_ECTSI (Similar to chromatin modifying protein 2B n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ70_ECTSI) HSP 1 Score: 352 bits (903), Expect = 9.040e-122 Identity = 198/203 (97.54%), Postives = 199/203 (98.03%), Query Frame = 1
Query: 1 AAAKDAKRAVRSGERDLDKEIRNLDRSEKSLVAEIKKTAKGGNQGATRTLAKQLVQLRAQKEQLYSARAKLAGVGNAATTAATSASLAGVMGNVAGVMKKVNEAVSTEETAKIMQQFAVENEKMNMSEEMMDDALIDAFDGEGVEEEADGVVGQVLAELGLEMDGKMVDAPTNTPTGVARPSAVEDTKLDAKTEELLAQLGAL 609
AAAKDAKRAVRSGERDLDKEIRNLDRSEKSLVAEIKKTAKGGNQGATRTLAKQLVQLRAQK+QLYSARAKLAGVGNAATTAATSASLAGVMGNVAGVMKKVNEAVSTEETAKIMQQFAVENEKMNMSEEMMDDALIDAFDGEGVEEEADGVVGQVLAELGLEMDGKMVDAPTNTP GVARPS ED KLDAKTEELLAQLGAL
Sbjct: 11 AAAKDAKRAVRSGERDLDKEIRNLDRSEKSLVAEIKKTAKGGNQGATRTLAKQLVQLRAQKDQLYSARAKLAGVGNAATTAATSASLAGVMGNVAGVMKKVNEAVSTEETAKIMQQFAVENEKMNMSEEMMDDALIDAFDGEGVEEEADGVVGQVLAELGLEMDGKMVDAPTNTPAGVARPSEAEDAKLDAKTEELLAQLGAL 213
BLAST of mRNA_Ecto-sp13_S_contig15503.4105.1 vs. uniprot
Match: A0A835YLS1_9STRA (Chromatin modifying protein-like protein 2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLS1_9STRA) HSP 1 Score: 186 bits (471), Expect = 4.150e-56 Identity = 109/202 (53.96%), Postives = 143/202 (70.79%), Query Frame = 1
Query: 7 AKDAKRAVRSGERDLDKEIRNLDRSEKSLVAEIKKTA-KGGNQGATRTLAKQLVQLRAQKEQLYSARAKLAGVGNAATTAATSASLAGVMGNVAGVMKKVNEAVSTEETAKIMQQFAVENEKMNMSEEMMDDALIDAFDGEGVEEEADGVVGQVLAELGLEMDGKMVDAPTNTPTGVARPSAVEDTKLDAKTEELLAQLGAL 609
A+ AKR VR GERD+++E+RNLDR EK L+ +IKKTA K G + ATR LA QLV LR Q+++LY+ ++ + VG T A A++AGVMG+V G MK VN +S +E A ++QQFA+++E M M EE+MDDAL DAFDG+GVE E D +V QVL E+GL+M KM DAPT P + A +D+ LD + EELL QL AL
Sbjct: 12 ARSAKRQVRQGERDVERELRNLDRVEKQLIIDIKKTARKPGGEKATRNLAGQLVGLRKQRDKLYTMKSTITAVGYQTTAIAGQAAMAGVMGSVTGAMKDVNAQLSPQEMAAVLQQFALQSETMGMREELMDDALTDAFDGDGVEAETDAIVDQVLTEIGLDMTSKMADAPTGKPAA-GQQLAQDDSMLDQRAEELLKQLQAL 212
BLAST of mRNA_Ecto-sp13_S_contig15503.4105.1 vs. uniprot
Match: A0A7S2EVL5_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EVL5_TRICV) HSP 1 Score: 150 bits (379), Expect = 4.450e-42 Identity = 99/209 (47.37%), Postives = 129/209 (61.72%), Query Frame = 1
Query: 1 AAAKDAKRAVRSGERDLDKEIRNLDRSEKSLVAEIKKTAKG----GNQGATRTLAKQLVQLRAQKEQLYSARAKLAGVGNAATTAATSASLAGVMGNVAGVMKKVNEAVSTEETAKIMQQFAVENEKMNMSEEMMDDALIDAFDGEGVEEEADGVVGQVLAELGLEMDGKMV--DAPTNTPTGVARPSAVEDTKLDAKTEELLAQLGAL 609
AA + KR VR +RD+D+EIR LDR+E ++AEIKK AK GN A LAKQLVQ+R QKE+++S +A L VG AT A+ + A +GNV M N ++ KIM +F +NE M + EE+MDDAL DAFD + VEEEA+ V QVLAELG+E+D KMV DAP P G + ++ DA +L A+L AL
Sbjct: 16 AAKRSTKREVRGAQRDMDREIRELDRTEAQVLAEIKKRAKAPGVSGNDRALSALAKQLVQIRKQKEKMFSTKANLGAVGMQATAMASQVAAASAVGNVTKAMGTANASIDAAAVGKIMTEFQRQNEIMGVREELMDDALTDAFDADEVEEEAEAVTNQVLAELGVELDSKMVGLDAPKQKPVGEEMNAEEKEALYDA-LPDLRARLDAL 223
BLAST of mRNA_Ecto-sp13_S_contig15503.4105.1 vs. uniprot
Match: A0A4D9D707_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D707_9STRA) HSP 1 Score: 146 bits (368), Expect = 1.430e-40 Identity = 84/189 (44.44%), Postives = 124/189 (65.61%), Query Frame = 1
Query: 10 KDAKRAVRSGERDLDKEIRNLDRSEKSLVAEIKKTAKGGNQGATRTLAKQLVQLRAQKEQLYSARAKLAGVGNAATTAATSASLAGVMGNVAGVMKKVNEAVSTEETAKIMQQFAVENEKMNMSEEMMDDALIDAFDGEGVEEEADGVVGQVLAELGLEMDGKMVDAPTNT-PTGVARPSAVEDTKLDA 573
++ KR +R ERD+D+E++NL R E L+ +IKK A G + +AK LVQLRAQK++L + + + GVG A+ + A++ MG + GVM +NE + +T+K+M +FA +NE MN+ E+++DDAL+DAFDG+GVEEEA+ VV QVL E+GLE+ KM D P GV + S + L+A
Sbjct: 14 RETKREIRHNERDMDRELQNLAREEAKLIHDIKKMAANNQHGPLKVMAKNLVQLRAQKDKLITMKTTMTGVGYKASLMHSQAAVGQAMGRMTGVMGDMNEMMDATKTSKVMTEFARQNEYMNVKEDLLDDALMDAFDGDGVEEEAESVVNQVLEEIGLELGSKMADVPVGKLRDGVDKESIEDKAALEA 202
BLAST of mRNA_Ecto-sp13_S_contig15503.4105.1 vs. uniprot
Match: A0A1Z5KR86_FISSO (Charged multivesicular body protein 2B n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KR86_FISSO) HSP 1 Score: 136 bits (342), Expect = 1.330e-36 Identity = 87/195 (44.62%), Postives = 125/195 (64.10%), Query Frame = 1
Query: 34 SGERDLDKEIRNLDRSEKSLVAEIK---KTAKGGNQGATRTLAKQLVQLRAQKEQLYSARAKLAGVGNAATTAATSASLAGVMGNVAGVMKKVNEAVSTEETAKIMQQFAVENEKMNMSEEMMDDALIDAFDGEGVEEEADGVVGQVLAELGLEMDGKMVDAPTNTPTGVARPSAVEDTKLDAKTEELLAQLGAL 609
S + DLD+EIR LDR EK++ E+K KTA N + LAKQ+VQ+R Q+ +L++A+A++ +G AT AA+ + MG++ MK N+ + ++T KIM +F ENE++ + EEMMDD L+DAFD EG+EEEAD + QVLAELG+E+D +MV N P + A E+ LD +L A+L AL
Sbjct: 26 SNQXDLDREIRELDRQEKTITVELKQRAKTASSANDPTLKALAKQMVQVRQQRNKLHTAKAQVGAMGMHATVAASQIAAVTAMGSITESMKVANKQMDIKKTTKIMAEFQRENERIQVKEEMMDDVLMDAFDSEGMEEEADQLTNQVLAELGVELDQQMVGL--NAPA--KKLQAEEEEVLDEVLPDLKARLDAL 216
BLAST of mRNA_Ecto-sp13_S_contig15503.4105.1 vs. uniprot
Match: A0A1E7EY94_9STRA (Snf7-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EY94_9STRA) HSP 1 Score: 135 bits (339), Expect = 5.600e-36 Identity = 88/190 (46.32%), Postives = 119/190 (62.63%), Query Frame = 1
Query: 61 IRNLDRSEKSLVAEIKKTAK---GGNQGATRTLAKQLVQLRAQKEQLYSARAKLAGVGNAATTAATSASLAGVMGNVAGVMKKVNEAVSTEETAKIMQQFAVENEKMNMSEEMMDDALIDAFDGEGVEEEADGVVGQVLAELGLEMDGKMVD--APTNTPTGVARP--SAVEDTKLDAKTEELLAQLGAL 609
+R LDR E + E+K+ AK A LAKQLVQ+R Q+E++ +A+A + VG AT AT + A +GNV+ MK NEA++ +ET KI+ +F ENEK+ + +EMMDDAL+DAFD E VEEEA+ + QVLAELG+EMD KMV AP+ + A S E LDA +L ++L AL
Sbjct: 42 LRELDRQESQITKELKQRAKLTSSSKDPALAALAKQLVQIRKQREKIMTAKAHIGAVGMNATAMATQVAAASAIGNVSKAMKITNEAMNVQETTKILHEFQRENEKLEVKQEMMDDALMDAFDSEDVEEEAEELTNQVLAELGVEMDSKMVGLTAPSKIVSSSAEQNMSTEEQAALDAMLPDLKSRLDAL 231
BLAST of mRNA_Ecto-sp13_S_contig15503.4105.1 vs. uniprot
Match: A0A7S2VFB0_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VFB0_9STRA) HSP 1 Score: 134 bits (338), Expect = 5.880e-36 Identity = 90/192 (46.88%), Postives = 121/192 (63.02%), Query Frame = 1
Query: 49 LDKEIRNLDRSEKSLVAEIKKTAKGGNQGAT---RTLAKQLVQLRAQKEQLYSARAKLAGVGNAATTAATSASLAGVMGNVAGVMKKVNEAVSTEETAKIMQQFAVENEKMNMSEEMMDDALIDAFDGEGVEEEADGVVGQVLAELGLEMDGKMV--DAPTNTPTGVARPSAVEDTKLDAKTEELLAQLGAL 609
+D+EIR LDR EK + E+K+ AKG N + +TLAKQLVQ+R Q+ +L A+A+L +G A A+ + +G+V MK N+ ++ +ET KIM +F ENE++ + EMMDD L+DAFD EG+EEEAD V QVLAELG+EMD +MV DAP T G A D DA +L A+L AL
Sbjct: 31 MDREIRELDRQEKQITMELKQRAKGANSSSDPTLKTLAKQLVQVRQQRSKLVGAKAQLGAMGMHAQVTASQVAAVQAVGSVTDAMKVANKQLNVKETTKIMTEFQRENERLAVKSEMMDDVLMDAFDSEGMEEEADQVTNQVLAELGVEMDQQMVGLDAP-KTKVGAEEVPAETDPIEDA-LPDLRARLNAL 220
BLAST of mRNA_Ecto-sp13_S_contig15503.4105.1 vs. uniprot
Match: A0A7S1BMU4_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BMU4_9STRA) HSP 1 Score: 134 bits (337), Expect = 8.310e-36 Identity = 85/208 (40.87%), Postives = 132/208 (63.46%), Query Frame = 1
Query: 4 AAKDAKRAVRSGERDLDKEIRNLDRSEKSLVAEIKKTAKGG----NQGATRTLAKQLVQLRAQKEQLYSARAKLAGVGNAATTAATSASLAGVMGNVAGVMKKVNEAVSTEETAKIMQQFAVENEKMNMSEEMMDDALIDAFDGEGVEEEADGVVGQVLAELGLEMDGKM--VDAPTNTPTGVARPSAVEDTKLDAKTEELLAQLGAL 609
AA++ KR VRS +R +D+E+R L+R E++L+A+IKK AK G N A + L+KQLV R QK++L +++++ + AT ++ + A +G V M N+AV ++ + M +F +NE M++ E++ +DAL DAFDG+ VEEEAD V Q+LAELGLE+ GKM ++ P+ P VA VED + + +L ++L AL
Sbjct: 14 AARETKREVRSAQRGIDRELRELERQERTLLADIKKRAKTGGITKNDSALKALSKQLVHTRGQKDRLQESKSQIGSMALKATAMSSQVAAAQAVGKVTQAMGNANQAVDIKKLSAQMGEFMRQNEMMDLKEDLFNDALADAFDGDEVEEEADAVTDQILAELGLELSGKMEGLNVPSAAPP-VAEEEVVEDDGISSNIPDLQSRLNAL 220
BLAST of mRNA_Ecto-sp13_S_contig15503.4105.1 vs. uniprot
Match: A0A024UK03_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UK03_9STRA) HSP 1 Score: 125 bits (314), Expect = 2.020e-32 Identity = 79/200 (39.50%), Postives = 114/200 (57.00%), Query Frame = 1
Query: 7 AKDAKRAVRSGERDLDKEIRNLDRSEKSLVAEIKKTAKGGNQGATRTLAKQLVQLRAQKEQLYSARAKLAGVGNAATTAATSASLAGVMGNVAGVMKKVNEAVSTEETAKIMQQFAVENEKMNMSEEMMDDALIDAFDGEGVEEEADGVVGQVLAELGLEMDGKMVDAPTNTPTGVARPSAV--EDTKLDAKTEELLAQL 600
AK+AKR + +R+L++E L+R EK L+A+IKK AK GN G T+ LAKQL+QLR QK+++ ++ L +G T+ A ++ + M ++ + K++ F ++E M M EEM+DD LIDAFD E VE E D VV QVL E+GL++ M DAPT A A+ + T L T+ A L
Sbjct: 15 AKEAKRGIAQSQRELEREKMALERQEKQLIADIKKAAKEGNTGGTKILAKQLIQLRQQKDKMTMLKSNLGSIGLQTTSMAAQMTMVAAIEKTTKTMASTSKQMDMNRFQKVIMDFEKQSEMMGMREEMLDDTLIDAFDDEEVEAEGDAVVDQVLTEIGLDLGSLMADAPTRQANATAAMDALLPDVTLLPTPTKVTAASL 214
BLAST of mRNA_Ecto-sp13_S_contig15503.4105.1 vs. uniprot
Match: A0A067D5G0_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D5G0_SAPPC) HSP 1 Score: 125 bits (313), Expect = 2.500e-32 Identity = 76/172 (44.19%), Postives = 109/172 (63.37%), Query Frame = 1
Query: 7 AKDAKRAVRSGERDLDKEIRNLDRSEKSLVAEIKKTAKGGNQGATRTLAKQLVQLRAQKEQLYSARAKLAGVGNAATTAATSASLAGVMGNVAGVMKKVNEAVSTEETAKIMQQFAVENEKMNMSEEMMDDALIDAFDGEGVEEEADGVVGQVLAELGLEMDGKMVDAPTNT 522
A++AKR + G+RDL++E L+R EK L+ +IKK AK GNQ T+ LAKQLVQ+RAQKE+L + L G+G A+ A ++ M M N+ + K + +F ++E M+M +EMM+D LIDAFD + VEE D VV QVLAE+GL++ ++ DAPT +
Sbjct: 16 AREAKREIAHGQRDLEREKMVLERQEKQLILDIKKAAKDGNQAGTKILAKQLVQVRAQKEKLMVMKVSLGGIGMQASAMAAQQTMVATMEKTTKTMVAANKQMDMSRIQKTLMEFEKQSELMSMGQEMMEDTLIDAFDDDEVEE--DLVVDQVLAEIGLDLHTQLADAPTQS 185 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15503.4105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig15503.4105.1 >prot_Ecto-sp13_S_contig15503.4105.1 ID=prot_Ecto-sp13_S_contig15503.4105.1|Name=mRNA_Ecto-sp13_S_contig15503.4105.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=204bp AAAKDAKRAVRSGERDLDKEIRNLDRSEKSLVAEIKKTAKGGNQGATRTLback to top mRNA from alignment at Ecto-sp13_S_contig15503:756..3224- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig15503.4105.1 ID=mRNA_Ecto-sp13_S_contig15503.4105.1|Name=mRNA_Ecto-sp13_S_contig15503.4105.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2469bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15503:756..3224- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15503:756..3224- >mRNA_Ecto-sp13_S_contig15503.4105.1 ID=mRNA_Ecto-sp13_S_contig15503.4105.1|Name=mRNA_Ecto-sp13_S_contig15503.4105.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=612bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15503:756..3224- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |