mRNA_Ecto-sp13_S_contig15454.4079.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15454.4079.1
Unique NamemRNA_Ecto-sp13_S_contig15454.4079.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15454.4079.1 vs. uniprot
Match: A0A6H5KMU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMU8_9PHAE)

HSP 1 Score: 246 bits (627), Expect = 2.920e-76
Identity = 122/130 (93.85%), Postives = 124/130 (95.38%), Query Frame = 1
Query:   19 SKLRQDALDIALNQVSDVNGWYTSKLQLQLASLQLCLACRGVPTSHLTVERDVLALLWPNSAAEATRSRLVGLGRSRVPALRPRKVTWNLAALSMRHCGDTFESVDVLVFGDSFDYRVDRVTWPPRLKKL 408
            SKLRQDALDIALNQVS VNGWYTSKLQLQLASLQLCLACR VPTSHLTVERDVLALLWP+SAAEATRSRLV LG+SRVPALRPRKVTWNLA LSMRHCGD FESVDVLVFGDSFDYRVDRVTWPP LKKL
Sbjct:   12 SKLRQDALDIALNQVSGVNGWYTSKLQLQLASLQLCLACRRVPTSHLTVERDVLALLWPHSAAEATRSRLVSLGQSRVPALRPRKVTWNLATLSMRHCGDAFESVDVLVFGDSFDYRVDRVTWPPGLKKL 141          
BLAST of mRNA_Ecto-sp13_S_contig15454.4079.1 vs. uniprot
Match: A0A6H5JFC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC0_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 3.370e-20
Identity = 57/138 (41.30%), Postives = 77/138 (55.80%), Query Frame = 1
Query:   10 LSGSKLRQDALDIALNQVSDVNGWYTSKLQLQLASLQLCLACRGVPTSHLTVERDVLALLWP-NSAAEATRSRLVGLGR----SRVPALRPRKVTWNLAALSMRHCGDTFESVDVLVFGDSFDYRVDRVTWPPRLKKL 408
            ++G     DA  +ALNQ  D  GWY S  QLQL+SL  C+ACR VPT HL V+R   A L+  +  A A R +  G  +    +RVPALR RKVTW L+  + R  G    SV++ V GD+ +  +D   W   ++ L
Sbjct:   24 IAGPSRCLDAFKVALNQACDGGGWYVSTEQLQLSSLPFCVACRSVPTMHLKVDRSTPARLFSGDDDAAAVRDKGHGSSKRVMAARVPALRARKVTWQLSGETPRCTGVGLSSVELFVLGDAVNDSMDEAVWSDGMRSL 161          
BLAST of mRNA_Ecto-sp13_S_contig15454.4079.1 vs. uniprot
Match: D8LCS9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS9_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 5.470e-19
Identity = 60/132 (45.45%), Postives = 70/132 (53.03%), Query Frame = 1
Query:   34 DALDIALNQVSDVNGWYTSKLQLQLASLQLCLACRGVPTSHLTVERDVLALLWPNSAAEATRSRLVGLGRSRVPALRPRKVTWNLAALSMRHCGDTFESVDVLVFGDS-------FDYRVDRVTWPPRLKKL 408
            DAL +AL    D  GWYT   QLQLASL  C ACR VPT HLTV+ DV A L         ++ +   G SRVPA RPR VTWN    ++R   D F  V VLV G         F+  VD +  PP L+ L
Sbjct:   87 DALIVALTNAGDGQGWYTPTTQLQLASLDFCTACRAVPTVHLTVDGDVPARL---------KAGIDNGGASRVPAFRPRCVTWNKPIAALRGEDDVFADVRVLVLGHGLGRVGVRFNRWVDGLQLPPALQDL 209          
BLAST of mRNA_Ecto-sp13_S_contig15454.4079.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 2.710e-16
Identity = 54/124 (43.55%), Postives = 69/124 (55.65%), Query Frame = 1
Query:   40 LDIALNQVSDVNGWYTSKLQLQLASLQLCLACRGVPTSHLTVERDVLALLWPNSAAEATRSRLVGLGRSRVPALRPRKVTWNLAALS-MRHCGDTFESVDVLVFGDSFDYRVDRVTWPPRLKKL 408
            L +ALN+  D   WYTS  +LQLASL+LC+ACR   T HLTV+      L   +AA+A       L  +RVP LR R+ TWN+   S MR        VD L FG +F   +D + WP RLK +
Sbjct:  140 LTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLL--AAADAPSPHPKRLCGTRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEFGQAFHGSLDAIVWPRRLKTI 261          
BLAST of mRNA_Ecto-sp13_S_contig15454.4079.1 vs. uniprot
Match: D7FT95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT95_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 3.150e-15
Identity = 55/140 (39.29%), Postives = 72/140 (51.43%), Query Frame = 1
Query:    1 MAFLS--GSKLRQDALDIALNQVSDVNGWYTSKLQLQLASLQLCLACRGVPTSHLTVERDVLALLWPNSAAEATRSRLVGLGRSRVPALRPRKVTWNLAALSMRHC-GDTFESVDVLVFGDSFDYRVDR-VTWPPRLKKL 408
            M FL+  G     DAL IALNQ S    WYTS +QLQLASL+LC +CR +    L V+      LW  +A       +     +RVP +R R VTW L  L++R+  GD +  V     G  FD  + R + WP +L  L
Sbjct:    1 MCFLARAGPSRCLDALIIALNQASG-GEWYTSTMQLQLASLELCASCRSMHLLKLNVQHGTPTRLWRGTATTRETRSVKRRNVTRVPVVRARTVTWKLPGLALRNMTGDAWSEVTTFSLGPGFDDDLPRGIQWPEKLTLL 139          
BLAST of mRNA_Ecto-sp13_S_contig15454.4079.1 vs. uniprot
Match: D7G241_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G241_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 3.190e-15
Identity = 56/134 (41.79%), Postives = 70/134 (52.24%), Query Frame = 1
Query:   34 DALDIALNQVSDVNGWYTSKLQLQLASLQLCLACRGVPTSHLTVERDVLALLWPNSAAEATRSRLVG-------LGRSRVPALRPRKVTWNLAALSMRHCG-DTFESVDVLVF-GDSFDYRVDRVTWPPRLKKL 408
            +A  +AL+   D   WY S  QLQLASL LC ACRGVPT  L+VER     LW   AA   R RL G         R+RVP   PR+V W L A  +     + + +V  L+F G   D+  D  +WP  LK+L
Sbjct:   14 EAFVVALDLTCDGEKWYASTQQLQLASLDLCKACRGVPTLALSVERSTPEYLWAE-AARGPRGRLTGEKKPPAARTRTRVPPFGPRRVMWKLRARELGLARKELWANVQCLLFTGYHNDWVCDGFSWPTGLKRL 146          
BLAST of mRNA_Ecto-sp13_S_contig15454.4079.1 vs. uniprot
Match: A0A6H5JZZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 3.230e-15
Identity = 50/126 (39.68%), Postives = 71/126 (56.35%), Query Frame = 1
Query:   34 DALDIALNQVSDVNGWYTSKLQLQLASLQLCLACRGVPTSHLTVERDVLALLWPNSAAEATRSRLVGLGRSRVPALRPRKVTWNL-AALSMRHCGDTFESVDVLVFGDSFDYRVDRVTWPPRLKKL 408
            +A+ +AL +  D   WYTS  +LQLASL+ C+ACR   T HL V+  +  +L   +AA+        L R RVP LR R VTWN+  A  +R        +D L FG +F+  ++ VTWP RL+ +
Sbjct:   38 NAIYVALGETRDGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLL--AAADGPPQHPKRLSRRRVPRLRARHVTWNMPTAAELRSPIFALMDLDHLDFGSAFEGSLEAVTWPRRLESI 161          
BLAST of mRNA_Ecto-sp13_S_contig15454.4079.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 8.790e-15
Identity = 49/126 (38.89%), Postives = 70/126 (55.56%), Query Frame = 1
Query:   34 DALDIALNQVSDVNGWYTSKLQLQLASLQLCLACRGVPTSHLTVERDVLALLWPNSAAEATRSRLVGLGRSRVPALRPRKVTWNL-AALSMRHCGDTFESVDVLVFGDSFDYRVDRVTWPPRLKKL 408
            +AL +ALN+  D   WYTS  +LQLASL  C+ACR   T HL V+  +   L   ++A+A       L  +RVP LR R+VTWN+  A  +R        ++ L FGD+F   ++ V WP  L+ +
Sbjct:   53 EALIVALNETCDGKSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRLL--ASADAPPPHPKRLCWTRVPRLRSRRVTWNMPTAAKLRTPIFAMTDMEYLEFGDAFGDSLEAVPWPEHLRTM 176          
BLAST of mRNA_Ecto-sp13_S_contig15454.4079.1 vs. uniprot
Match: A0A6H5JA08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA08_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 1.040e-13
Identity = 49/124 (39.52%), Postives = 65/124 (52.42%), Query Frame = 1
Query:   34 DALDIALNQVSDVNGWYTSKLQLQLASLQLCLACRGVPTSHLTVERDVLALLWPNSAAEATRSRLVGLGRSRVPALRPRKVTWNLAALSMRHC-GDTFESVDVLVFGDSFDYRVDR-VTWPPRL 399
            DAL IALNQ S    WYTS +QLQL SL+LC ACR +    L V+      LW  +A       +     +RVP +R R VTW L  +++R+  GD +  V     G  FD  + R + WP +L
Sbjct:   45 DALIIALNQASG-GEWYTSTMQLQLTSLELCAACRSMHLLKLNVQHGTPPRLWRGTATTRETRSVKRRNVTRVPVVRARTVTWKLPGVALRNMTGDAWSEVTTFSLGPGFDDDLPRGIQWPEKL 167          
BLAST of mRNA_Ecto-sp13_S_contig15454.4079.1 vs. uniprot
Match: A0A6H5JRK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK5_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 2.490e-12
Identity = 54/137 (39.42%), Postives = 74/137 (54.01%), Query Frame = 1
Query:   13 SGSKLRQDALDIALNQVSDVNGWYTSKLQLQLASLQLCLACRGVPTSHLTVE----RDVLALLWPNSAAEATRSRLVGLGRSRVPALRPRKVTWNL-AALSMRHCGDTFESVDVLVFGDSFDYRVDRVTWPPRLKKL 408
            SGSK     L +ALN++ D   WYTS  +LQLASL+ CLACR      L V+    R++LA      A +A         R+RVP LR R+V WN+  A  +R      + V+ L FG  F+  ++ V WPP LK++
Sbjct:   16 SGSK----DLILALNEMCDGKRWYTSTKELQLASLEFCLACRKYQILELKVDAQTPRNLLA------AVDAPPPHTKRPCRTRVPRLRARRVKWNMPTATELRTLMFALKDVNCLRFGGVFNGSLEAVVWPPPLKQI 142          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15454.4079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5KMU8_9PHAE2.920e-7693.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFC0_9PHAE3.370e-2041.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCS9_ECTSI5.470e-1945.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPY7_9PHAE2.710e-1643.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FT95_ECTSI3.150e-1539.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G241_ECTSI3.190e-1541.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZZ4_9PHAE3.230e-1539.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRF9_9PHAE8.790e-1538.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JA08_9PHAE1.040e-1339.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRK5_9PHAE2.490e-1239.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15454contigEcto-sp13_S_contig15454:2470..3444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size975
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-03_001690.1
Cds size975
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462821.2177238-CDS-Ecto-sp13_S_contig15454:2469..34441681462821.2177238-CDS-Ecto-sp13_S_contig15454:2469..3444Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15454 2470..3444 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15454.4079.1prot_Ecto-sp13_S_contig15454.4079.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15454 2470..3444 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15454.4079.1

>prot_Ecto-sp13_S_contig15454.4079.1 ID=prot_Ecto-sp13_S_contig15454.4079.1|Name=mRNA_Ecto-sp13_S_contig15454.4079.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=325bp
MAFLSGSKLRQDALDIALNQVSDVNGWYTSKLQLQLASLQLCLACRGVPT
SHLTVERDVLALLWPNSAAEATRSRLVGLGRSRVPALRPRKVTWNLAALS
MRHCGDTFESVDVLVFGDSFDYRVDRVTWPPRLKKLIFGKDFDRSVDHVA
WPRSLKQLTFGAEFNKPIGSVSCSDSLQQITFGTCFNQPVEDVTWPASLQ
ELTFGREFNQPLQGVTWSASLQKLTFGRYFNQPIDRVMFPASLRQITFGF
SFDQPISDVLWPVSLKRLVFGYWFNQEVHEVSWPASLEELSFGTKFQAPV
DGIHWPDSLQRLTIAHRPIMPLQM*
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mRNA from alignment at Ecto-sp13_S_contig15454:2470..3444-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15454.4079.1 ID=mRNA_Ecto-sp13_S_contig15454.4079.1|Name=mRNA_Ecto-sp13_S_contig15454.4079.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=975bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15454:2470..3444- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGTTTCTTTCAGGTTCCAAACTACGTCAGGACGCCCTCGACATAGC CCTCAACCAGGTATCCGACGTGAATGGATGGTACACTTCGAAGCTACAAC TCCAGCTCGCGTCATTACAGCTGTGTCTGGCGTGCCGAGGAGTGCCCACA TCCCATCTGACGGTAGAGAGGGACGTGCTCGCCCTGCTGTGGCCGAATAG CGCGGCAGAAGCGACTCGTAGCAGACTGGTGGGCCTGGGACGATCCCGCG TACCCGCCCTCCGACCGCGCAAGGTTACGTGGAACCTAGCGGCGCTGTCG ATGCGGCACTGTGGGGATACTTTCGAAAGCGTGGACGTCTTGGTTTTCGG TGACTCGTTCGACTACAGGGTGGACCGAGTGACGTGGCCACCGCGGCTCA AGAAGCTAATTTTCGGGAAGGATTTCGATCGCTCGGTTGACCACGTAGCT TGGCCGAGGTCCCTGAAACAGCTCACCTTTGGGGCGGAGTTCAATAAGCC GATTGGCAGTGTTTCCTGCTCCGATTCCCTACAGCAGATTACGTTTGGAA CCTGCTTCAACCAGCCGGTCGAAGACGTAACATGGCCGGCGTCGCTGCAG GAGCTAACCTTCGGGAGAGAGTTCAACCAACCTCTTCAAGGGGTAACGTG GAGCGCGTCACTTCAGAAACTGACTTTCGGGAGGTACTTCAACCAGCCCA TCGACAGGGTCATGTTTCCGGCATCGCTGCGACAGATCACGTTCGGGTTC AGCTTCGACCAGCCAATTTCTGACGTTCTGTGGCCGGTGTCTCTGAAACG ACTGGTATTCGGGTACTGGTTCAACCAGGAAGTCCACGAAGTGTCATGGC CAGCGTCTCTGGAAGAGCTTTCTTTTGGTACAAAATTTCAAGCGCCGGTC GATGGCATCCATTGGCCGGATTCATTGCAGCGACTCACGATTGCGCACCG TCCAATCATGCCTCTGCAAATGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15454:2470..3444-

>mRNA_Ecto-sp13_S_contig15454.4079.1 ID=mRNA_Ecto-sp13_S_contig15454.4079.1|Name=mRNA_Ecto-sp13_S_contig15454.4079.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=975bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15454:2470..3444- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGTTTCTTTCAGGTTCCAAACTACGTCAGGACGCCCTCGACATAGC
CCTCAACCAGGTATCCGACGTGAATGGATGGTACACTTCGAAGCTACAAC
TCCAGCTCGCGTCATTACAGCTGTGTCTGGCGTGCCGAGGAGTGCCCACA
TCCCATCTGACGGTAGAGAGGGACGTGCTCGCCCTGCTGTGGCCGAATAG
CGCGGCAGAAGCGACTCGTAGCAGACTGGTGGGCCTGGGACGATCCCGCG
TACCCGCCCTCCGACCGCGCAAGGTTACGTGGAACCTAGCGGCGCTGTCG
ATGCGGCACTGTGGGGATACTTTCGAAAGCGTGGACGTCTTGGTTTTCGG
TGACTCGTTCGACTACAGGGTGGACCGAGTGACGTGGCCACCGCGGCTCA
AGAAGCTAATTTTCGGGAAGGATTTCGATCGCTCGGTTGACCACGTAGCT
TGGCCGAGGTCCCTGAAACAGCTCACCTTTGGGGCGGAGTTCAATAAGCC
GATTGGCAGTGTTTCCTGCTCCGATTCCCTACAGCAGATTACGTTTGGAA
CCTGCTTCAACCAGCCGGTCGAAGACGTAACATGGCCGGCGTCGCTGCAG
GAGCTAACCTTCGGGAGAGAGTTCAACCAACCTCTTCAAGGGGTAACGTG
GAGCGCGTCACTTCAGAAACTGACTTTCGGGAGGTACTTCAACCAGCCCA
TCGACAGGGTCATGTTTCCGGCATCGCTGCGACAGATCACGTTCGGGTTC
AGCTTCGACCAGCCAATTTCTGACGTTCTGTGGCCGGTGTCTCTGAAACG
ACTGGTATTCGGGTACTGGTTCAACCAGGAAGTCCACGAAGTGTCATGGC
CAGCGTCTCTGGAAGAGCTTTCTTTTGGTACAAAATTTCAAGCGCCGGTC
GATGGCATCCATTGGCCGGATTCATTGCAGCGACTCACGATTGCGCACCG
TCCAATCATGCCTCTGCAAATGTAG
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