prot_Ecto-sp13_S_contig1544.4070.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1544.4070.1
Unique Nameprot_Ecto-sp13_S_contig1544.4070.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length364
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1544.4070.1 vs. uniprot
Match: D7G4I0_ECTSI (Senescence domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I0_ECTSI)

HSP 1 Score: 655 bits (1689), Expect = 2.240e-236
Identity = 356/363 (98.07%), Postives = 358/363 (98.62%), Query Frame = 0 
Query:    1 MTSKLPPPSEKQPPLGDLPAGVPYEAILTAVGTLAEQSPSAGGGVSATGTVNVIQGRVDENPEAGFFGFLSVENLNVPLVSTSRSSRVGPGVYRVCIPGKEFLLTLDQRTEPPIVEGMENVLRWFTAFEGEEMPRGVTPAGVKVTGVKGVIESAGVAGAAMIMRVGEALNASIKERTEAKLAAQADKPAKKVKLGGAVTATTLTGARKVVGAGAGVAAAVIDKVSTVAGNAVANSSIVANSRGAPAGSRRREAHDMLVTGAVALGRVWEAADGQGKLLLESTGDGMGRIAGAKYGSEAEHAARSAGQIGLDGWRIFRFPTKLGVTTLVKGAVKGATAAGSQSSSTSNVGEYVAQPAPPNPSSS 363
            MTSKLPPP EKQPPLGDLPAGVPYEAILTAVGTLAEQSPSAGGGVSATG VNVIQGRVDENPEAGFFGFLSVENLNVPLVSTSRSSRVGPGVYRVCIPGKEFLLTLDQRTEPPIVEGMENVLRWFTAFEG+EMPRGVTPAGVK TGVKGVIESAGVAGAAMIMRVGEALNASIKERTEAKLAAQAD+PAKKVKLGGAVTATTLTGARKVVGAGAGVAAAVIDKVSTVAGNAVANSSIVANSRGAPAGS RREAHDMLVTGAVALGRVWEAADGQGKLLLESTGDGMGRIAGAKYGSEAEHAARSAGQIGLDGWRIFRFPTKLGVTTLVKGAVKGATAAGSQSSSTSNVG YVAQPAPPNPSSS
Sbjct:    1 MTSKLPPPPEKQPPLGDLPAGVPYEAILTAVGTLAEQSPSAGGGVSATGAVNVIQGRVDENPEAGFFGFLSVENLNVPLVSTSRSSRVGPGVYRVCIPGKEFLLTLDQRTEPPIVEGMENVLRWFTAFEGDEMPRGVTPAGVKATGVKGVIESAGVAGAAMIMRVGEALNASIKERTEAKLAAQADQPAKKVKLGGAVTATTLTGARKVVGAGAGVAAAVIDKVSTVAGNAVANSSIVANSRGAPAGSTRREAHDMLVTGAVALGRVWEAADGQGKLLLESTGDGMGRIAGAKYGSEAEHAARSAGQIGLDGWRIFRFPTKLGVTTLVKGAVKGATAAGSQSSSTSNVGGYVAQPAPPNPSSS 363
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1544.4070.1 vs. uniprot
Match: A0A1X6P731_PORUM (Senescence domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P731_PORUM)

HSP 1 Score: 69.3 bits (168), Expect = 2.660e-9
Identity = 42/116 (36.21%), Postives = 60/116 (51.72%), Query Frame = 0 
Query:  214 AGVAAAVIDKVSTVAGNAVANSSIVANSRGAPAGSRRREAHDMLVTGAVALGRVWEAADGQGKLLLESTGDGMGRIAGAKYGSEAEHAARSAGQIGLDGWRIFRFPTKLGVTTLVK 329
            AG    V  +V+T  G  +A S  +  +R AP  S     H  L TG +A   ++EAAD  G+ +L +T  G   +  A+YG  A   A  AG   +  +R+ RFP+K G TT+VK
Sbjct:  251 AGALTGVGHRVATAVGGGLAESGAMRRAREAPPNSVGGVFHTALSTGCLAFANIYEAADETGRAILTTTATGTTALTDARYGPRAASVAHDAGLTAVSAYRVVRFPSKFGATTVVK 366
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1544.4070.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4I0_ECTSI2.240e-23698.07Senescence domain-containing protein n=2 Tax=Ectoc... [more]
A0A1X6P731_PORUM2.660e-936.21Senescence domain-containing protein n=1 Tax=Porph... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009686Senescence/spartin-associatedPFAMPF06911Senescencecoord: 157..307
e-value: 4.6E-7
score: 30.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1544contigEcto-sp13_S_contig1544:8475..10116 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1544.4070.1mRNA_Ecto-sp13_S_contig1544.4070.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1544 7422..11714 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1544.4070.1 ID=prot_Ecto-sp13_S_contig1544.4070.1|Name=mRNA_Ecto-sp13_S_contig1544.4070.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=364bp
MTSKLPPPSEKQPPLGDLPAGVPYEAILTAVGTLAEQSPSAGGGVSATGT
VNVIQGRVDENPEAGFFGFLSVENLNVPLVSTSRSSRVGPGVYRVCIPGK
EFLLTLDQRTEPPIVEGMENVLRWFTAFEGEEMPRGVTPAGVKVTGVKGV
IESAGVAGAAMIMRVGEALNASIKERTEAKLAAQADKPAKKVKLGGAVTA
TTLTGARKVVGAGAGVAAAVIDKVSTVAGNAVANSSIVANSRGAPAGSRR
REAHDMLVTGAVALGRVWEAADGQGKLLLESTGDGMGRIAGAKYGSEAEH
AARSAGQIGLDGWRIFRFPTKLGVTTLVKGAVKGATAAGSQSSSTSNVGE
YVAQPAPPNPSSS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009686Senescence/spartin