mRNA_Ecto-sp13_S_contig1544.4070.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1544.4070.1
Unique NamemRNA_Ecto-sp13_S_contig1544.4070.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1544.4070.1 vs. uniprot
Match: D7G4I0_ECTSI (Senescence domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I0_ECTSI)

HSP 1 Score: 656 bits (1693), Expect = 5.510e-224
Identity = 356/363 (98.07%), Postives = 358/363 (98.62%), Query Frame = 1 
Query: 1054 MTSKLPPPSEKQPPLGDLPAGVPYEAILTAVGTLAEQSPSAGGGVSATGTVNVIQGRVDENPEAGFFGFLSVENLNVPLVSTSRSSRVGPGVYRVCIPGKEFLLTLDQRTEPPIVEGMENVLRWFTAFEGEEMPRGVTPAGVKVTGVKGVIESAGVAGAAMIMRVGEALNASIKERTEAKLAAQADKPAKKVKLGGAVTATTLTGARKVVGAGAGVAAAVIDKVSTVAGNAVANSSIVANSRGAPAGSRRREAHDMLVTGAVALGRVWEAADGQGKLLLESTGDGMGRIAGAKYGSEAEHAARSAGQIGLDGWRIFRFPTKLGVTTLVKGAVKGATAAGSQSSSTSNVGEYVAQPAPPNPSSS 2142
            MTSKLPPP EKQPPLGDLPAGVPYEAILTAVGTLAEQSPSAGGGVSATG VNVIQGRVDENPEAGFFGFLSVENLNVPLVSTSRSSRVGPGVYRVCIPGKEFLLTLDQRTEPPIVEGMENVLRWFTAFEG+EMPRGVTPAGVK TGVKGVIESAGVAGAAMIMRVGEALNASIKERTEAKLAAQAD+PAKKVKLGGAVTATTLTGARKVVGAGAGVAAAVIDKVSTVAGNAVANSSIVANSRGAPAGS RREAHDMLVTGAVALGRVWEAADGQGKLLLESTGDGMGRIAGAKYGSEAEHAARSAGQIGLDGWRIFRFPTKLGVTTLVKGAVKGATAAGSQSSSTSNVG YVAQPAPPNPSSS
Sbjct:    1 MTSKLPPPPEKQPPLGDLPAGVPYEAILTAVGTLAEQSPSAGGGVSATGAVNVIQGRVDENPEAGFFGFLSVENLNVPLVSTSRSSRVGPGVYRVCIPGKEFLLTLDQRTEPPIVEGMENVLRWFTAFEGDEMPRGVTPAGVKATGVKGVIESAGVAGAAMIMRVGEALNASIKERTEAKLAAQADQPAKKVKLGGAVTATTLTGARKVVGAGAGVAAAVIDKVSTVAGNAVANSSIVANSRGAPAGSTRREAHDMLVTGAVALGRVWEAADGQGKLLLESTGDGMGRIAGAKYGSEAEHAARSAGQIGLDGWRIFRFPTKLGVTTLVKGAVKGATAAGSQSSSTSNVGGYVAQPAPPNPSSS 363
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BLAST of mRNA_Ecto-sp13_S_contig1544.4070.1 vs. uniprot
Match: A0A1X6P731_PORUM (Senescence domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P731_PORUM)

HSP 1 Score: 69.3 bits (168), Expect = 2.340e-8
Identity = 42/116 (36.21%), Postives = 60/116 (51.72%), Query Frame = 1 
Query: 1693 AGVAAAVIDKVSTVAGNAVANSSIVANSRGAPAGSRRREAHDMLVTGAVALGRVWEAADGQGKLLLESTGDGMGRIAGAKYGSEAEHAARSAGQIGLDGWRIFRFPTKLGVTTLVK 2040
            AG    V  +V+T  G  +A S  +  +R AP  S     H  L TG +A   ++EAAD  G+ +L +T  G   +  A+YG  A   A  AG   +  +R+ RFP+K G TT+VK
Sbjct:  251 AGALTGVGHRVATAVGGGLAESGAMRRAREAPPNSVGGVFHTALSTGCLAFANIYEAADETGRAILTTTATGTTALTDARYGPRAASVAHDAGLTAVSAYRVVRFPSKFGATTVVK 366
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1544.4070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4I0_ECTSI5.510e-22498.07Senescence domain-containing protein n=2 Tax=Ectoc... [more]
A0A1X6P731_PORUM2.340e-836.21Senescence domain-containing protein n=1 Tax=Porph... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1544contigEcto-sp13_S_contig1544:7422..11714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3743
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionSenescence/spartin-associated
Ec32 orthologEc-07_000540.1
Cds size1092
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462820.3045053-UTR-Ecto-sp13_S_contig1544:7421..84741681462820.3045053-UTR-Ecto-sp13_S_contig1544:7421..8474Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1544 7422..8474 +
1681462820.3318307-UTR-Ecto-sp13_S_contig1544:10116..117141681462820.3318307-UTR-Ecto-sp13_S_contig1544:10116..11714Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1544 10117..11714 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462820.3135595-CDS-Ecto-sp13_S_contig1544:8474..90981681462820.3135595-CDS-Ecto-sp13_S_contig1544:8474..9098Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1544 8475..9098 +
1681462820.322521-CDS-Ecto-sp13_S_contig1544:9648..101161681462820.322521-CDS-Ecto-sp13_S_contig1544:9648..10116Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1544 9649..10116 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1544.4070.1prot_Ecto-sp13_S_contig1544.4070.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1544 8475..10116 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1544.4070.1

>prot_Ecto-sp13_S_contig1544.4070.1 ID=prot_Ecto-sp13_S_contig1544.4070.1|Name=mRNA_Ecto-sp13_S_contig1544.4070.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=364bp
MTSKLPPPSEKQPPLGDLPAGVPYEAILTAVGTLAEQSPSAGGGVSATGT
VNVIQGRVDENPEAGFFGFLSVENLNVPLVSTSRSSRVGPGVYRVCIPGK
EFLLTLDQRTEPPIVEGMENVLRWFTAFEGEEMPRGVTPAGVKVTGVKGV
IESAGVAGAAMIMRVGEALNASIKERTEAKLAAQADKPAKKVKLGGAVTA
TTLTGARKVVGAGAGVAAAVIDKVSTVAGNAVANSSIVANSRGAPAGSRR
REAHDMLVTGAVALGRVWEAADGQGKLLLESTGDGMGRIAGAKYGSEAEH
AARSAGQIGLDGWRIFRFPTKLGVTTLVKGAVKGATAAGSQSSSTSNVGE
YVAQPAPPNPSSS*
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mRNA from alignment at Ecto-sp13_S_contig1544:7422..11714+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1544.4070.1 ID=mRNA_Ecto-sp13_S_contig1544.4070.1|Name=mRNA_Ecto-sp13_S_contig1544.4070.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4293bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1544:7422..11714+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTCCGGGCGCATAAAGGGGTTCATCAGTCATGCTTCCTATCGGCCTGG
CACCGCGGCTACTGCTGTCACATGGGCTGGATTTGAGTGAACTTTAATTG
CTTTTGCTTTTTCTCGATCTGAACGAGGCGACCCACCAATTGGTGAATCG
GTTCACCAAAGTTGGAACTTTTGAGTGCATATCCGATGTTGTCGACAACA
GCATCATACATGCATATTTCATGTCGGCTAGCGTAGCGGGATAGTTCTTC
CAAGGTGTACATACGCCATTTGGCTCGTGCTTGCTGTTGAACTGTAGTTA
CCGTCAACGCCGTTTTGACTTGAGGGCCCGCAGATCTCTGGAGCGTGCTG
CTACCTCTCTGTTCTCGAAAGATTGAGTGATCCGCCCAACGTTGCCACTG
AGTAGCACCCATCGACTCTGAGAAGTTTGAGAGGGCCACATGAACGCTTG
AGAAATACTTCTGTTTCTTCCTAAGCCGGAAACACACATACACCGCAATC
CCTTTCGACAACGTCGCGGGTTTCTTATTTCTCTGTGAAGAGCAAGAAGA
AAATAACGCTGCATGTATCCACGCTGCATGTATCTACTCGACAGGAGGGC
CTGAGGTTTCCAAGAAAAAATCCCCCGGGGGTGTGAATTCTTGTCCCAAG
CAAATAGGAGCCCCCCAGGTGTTGCTCCAAATATTGTTTTCTAGTGTTTG
GAATACTTGTCAGACACACATGCATTTCCCAATATTGTGCAACTGTCACA
TAAGATACTGCTGTTGCCTGTAGTGATTATTCTAACGGGACAGATACGCC
TCCTCCAACCCGTACAATGGTCCGTAACATTGGTAGCTGTGTTTCGCTGT
CAAGTCTCTCGCGTGCAGGGCAGAGCTCGTGGACGATGCCCTCCACTAAC
CAAAGGAACTGTCCATCCCTTTCGTAACCTCTTCGGGCTTGCTTGCCTCG
AACGCGATCGATTCGGCTTGCTCGTAACAACCTGCCGTGGAAAAAAAAAA
ATGCTCTCGCAGGAGAAGCGCGCACCGTCATCATCCCAGCAAAAGGACCA
ACCATGACGAGCAAGCTGCCGCCGCCATCGGAGAAGCAGCCGCCTCTGGG
CGACCTGCCCGCGGGGGTCCCGTACGAGGCCATCCTCACCGCGGTGGGTA
CCCTGGCGGAGCAGTCCCCGTCGGCGGGCGGCGGGGTTTCCGCCACGGGG
ACGGTGAACGTGATCCAGGGGAGGGTGGACGAGAACCCCGAGGCCGGCTT
CTTCGGCTTCCTGTCGGTTGAGAACCTCAACGTCCCGCTCGTGTCGACGT
CCCGGTCCTCGCGGGTCGGCCCGGGCGTCTACCGCGTGTGCATCCCGGGC
AAGGAGTTCCTGCTCACGCTGGACCAGCGCACGGAGCCCCCGATCGTCGA
GGGCATGGAGAACGTCCTGCGGTGGTTCACGGCCTTCGAGGGAGAAGAGA
TGCCCCGCGGCGTCACGCCCGCCGGTGTCAAGGTCACCGGCGTCAAGGGC
GTGATCGAGAGCGCAGGCGTGGCCGGGGCGGCGATGATCATGCGGGTGGG
CGAGGCGCTGAACGCGAGCATCAAGGAGCGGACCGAGGCCAAGCTGGCGG
CGCAGGCCGACAAGCCGGCGAAGAAGGTCAAGCTGGGCGGGGCGGTGACC
GCCACCACGCTGACCGGGGCGCGCAAGGTGAGATCTGTGCTACTGTACCA
CCGTAGGTGACCAAAGATACCACACCCCTCGGACCGATTTGCAATGCTGG
AACTCCACAGTAGGATGAGTGGCGGTGCCGCGCTGAGACTGGCTCGTCGA
GAGCTTTCCAAAATCGCACCATTTGAATGTGGAGTAACCGAGCTTGGAAA
ACCGGCCGAGGGGGGGGGTGGTATCCTGTGTCATGTCACCCACGGTGTGT
AGCCGTCTTGCTATTTCGGAAGTGGTGATGGCCGCCGTGGACGGCTGGAC
TGCGATGCTGGTACTAAATTAGTGAAGACGCCTCTTGCCGTTTTTTTTGG
GGGGGACACGCGTGACTTGGCACTATTTTGACGACAAAAACTGTATTTTG
TAGACGGATTTCAGTGATGCAAGCTTTCCTTGAAAGGTGCACTCCCTCCT
GCAATATATAGTGCAACCTTCGAAGGCTCGAGCGTTGCACTTGTAGCCAG
GTCGACAAGTCTTCAAATTCTTTAAGCACACTGCTGTTGTTTCACGTTGA
CGTTCCATTCCCGTCTGCGTGTTGCAGGTCGTCGGCGCCGGCGCCGGCGT
CGCCGCGGCCGTCATCGACAAGGTGTCCACGGTGGCCGGAAACGCCGTGG
CAAACAGCAGCATTGTGGCGAACTCGCGAGGCGCTCCGGCGGGTTCCAGG
AGACGCGAGGCCCACGACATGCTCGTCACCGGGGCGGTGGCGCTCGGCCG
AGTCTGGGAGGCGGCAGACGGCCAGGGCAAGCTGCTGCTGGAGTCGACCG
GCGACGGTATGGGACGGATCGCGGGAGCCAAGTACGGGTCGGAGGCGGAG
CACGCGGCGAGGTCGGCGGGCCAGATCGGGTTGGACGGGTGGCGCATCTT
CCGGTTCCCGACGAAGCTAGGGGTGACGACGCTCGTCAAGGGCGCCGTCA
AGGGCGCTACCGCCGCCGGCTCACAGTCCTCCTCGACGAGCAATGTGGGG
GAGTATGTCGCTCAGCCTGCACCTCCGAACCCCTCCAGTAGCTAGCAACC
TGGGTGGAGAAAGATTACGACGCGCTGAGCACGGCGGGCTTGGAAGATGA
CCGGGGATCTATCTTTTCTTCAGTGCTTGTACCGTCGAAGACTTCAGGGG
GCATGTTTCGGCCAGTTCCCGTCGGCTTGTAGTCGATGCAATAGCTGCAA
CGCGTTGCTGCTGGGGTCCACTTCGGCTGGGCAGTAATTAATTGCGTCCT
TAATAAACAAGGCGAACATGCGGTGCTCGTTCGAATTTTAAGATGGCCGC
TGGTCTTGCCCTGCACAACAGCACCAACAGTAGTGTCGATTGAATGGGTG
ATAGATTTTTTGTTTCGACGTCTTTCTAGCGAGAGGAGGCGATAGAAAGT
AACGTACATGTTGCGATTGTAATCGTGCTGGATATCCAGTCTATGTGTTA
GGTGACCTCTAGAATGTTGGGGAACCGGGAGCTTGCGAAGCGAAATTCTT
GCGAATGTCAAATTTGTTTGCCTGTTCTGTGCGAAATCATTCGCACTGGG
TGACCGCGACTGGCAGCAAGTTGTGCACTGGTCGTGGTAATGTTTTATGT
CGAGGGGAACGATTGTGGGGCCTTCGAGTGTATGTTTTGTACTTCCGCTT
GCCTGTGGTCTTTTGCTATGTCCAATTTGTTGAGGTAGGAGTGCTTGTTC
CGAAGTTCAAAGACGCCGGTGGAAGCCATGACTTACGTCGCCGTCGGACA
CAAGCTTTGTTTTCTTGTTTAGTTGTCCTCGATACGCCGAAATATCTAAC
GTAATTTGTGGACACGGGTAACGCATCACTTGCTTGCCTTCTTTTTCCTT
TGAACCGGTTACGCCTAAACCATCGTCGCCAGAAACGTGAATGGGCACGT
CGCCGGGCGTGGCCGTGGTATGCCTGGCACTAGGGTGTACCGACACGTCA
CTGCATCAGGCATTTTACGCAGCGCGATTTTGATCGAACGATCGGAAATC
ATGTTTCATGTGGAACTTATTTTTTGTTTGAGGCCCTCTTTTTTTGATGA
AAGTCAAAGCCACGTGCATGATGGGCACCAGTAAAGGCCGGCAGGTGGAT
GTTTTTGGACGTGTGCAGTGGACGAAATTGGAGATGATTTCCAACTCAAC
TTCGGCCGTCAATCGAATCCTGAGAAGCGCCACCCCTTCTTTCATTCGAC
AGCCGTTGTTTGTGTTCCTTGGCCTGGAACGGTACGCTGATGGCGGAATG
AGTGGAGTCTCCTCTTAGTAGGCCGTCCGCCACTTGCATACGGCCTGTAA
CGCTGTGCTCAAAAAAGTGTGTCCGCCCCGGGGCTCGTCGGTATTCTGCT
TGTTGCAAGATCACCCCGTTGCCTTGGTTGAAGTCCCAGGAGGGCGGGTC
TTCGCGAAACACCGTTCGCCTATGACGGGGTGTATTTGTAGGAAACAAAG
TGGTAGTAGTAGTAGTAGTCCGAAATGTCCTTCCGTCGATTTCCGTGCCT
CTCCTTCTTTTTGTCTGTTTGCTGTTGATTTCGCAGCTTCTTTCTCCAGG
AAGGATCCAAGTTGCACCCATTGTAAACTTTTCCTACGTGTCTGTCCTTG
ATGGATTCGTGAACGTTTAATCCCAGACCAATGATGATGGATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1544:7422..11714+

>mRNA_Ecto-sp13_S_contig1544.4070.1 ID=mRNA_Ecto-sp13_S_contig1544.4070.1|Name=mRNA_Ecto-sp13_S_contig1544.4070.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1092bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1544:7422..11714+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGAGCAAGCTGCCGCCGCCATCGGAGAAGCAGCCGCCTCTGGGCGA
CCTGCCCGCGGGGGTCCCGTACGAGGCCATCCTCACCGCGGTGGGTACCC
TGGCGGAGCAGTCCCCGTCGGCGGGCGGCGGGGTTTCCGCCACGGGGACG
GTGAACGTGATCCAGGGGAGGGTGGACGAGAACCCCGAGGCCGGCTTCTT
CGGCTTCCTGTCGGTTGAGAACCTCAACGTCCCGCTCGTGTCGACGTCCC
GGTCCTCGCGGGTCGGCCCGGGCGTCTACCGCGTGTGCATCCCGGGCAAG
GAGTTCCTGCTCACGCTGGACCAGCGCACGGAGCCCCCGATCGTCGAGGG
CATGGAGAACGTCCTGCGGTGGTTCACGGCCTTCGAGGGAGAAGAGATGC
CCCGCGGCGTCACGCCCGCCGGTGTCAAGGTCACCGGCGTCAAGGGCGTG
ATCGAGAGCGCAGGCGTGGCCGGGGCGGCGATGATCATGCGGGTGGGCGA
GGCGCTGAACGCGAGCATCAAGGAGCGGACCGAGGCCAAGCTGGCGGCGC
AGGCCGACAAGCCGGCGAAGAAGGTCAAGCTGGGCGGGGCGGTGACCGCC
ACCACGCTGACCGGGGCGCGCAAGGTCGTCGGCGCCGGCGCCGGCGTCGC
CGCGGCCGTCATCGACAAGGTGTCCACGGTGGCCGGAAACGCCGTGGCAA
ACAGCAGCATTGTGGCGAACTCGCGAGGCGCTCCGGCGGGTTCCAGGAGA
CGCGAGGCCCACGACATGCTCGTCACCGGGGCGGTGGCGCTCGGCCGAGT
CTGGGAGGCGGCAGACGGCCAGGGCAAGCTGCTGCTGGAGTCGACCGGCG
ACGGTATGGGACGGATCGCGGGAGCCAAGTACGGGTCGGAGGCGGAGCAC
GCGGCGAGGTCGGCGGGCCAGATCGGGTTGGACGGGTGGCGCATCTTCCG
GTTCCCGACGAAGCTAGGGGTGACGACGCTCGTCAAGGGCGCCGTCAAGG
GCGCTACCGCCGCCGGCTCACAGTCCTCCTCGACGAGCAATGTGGGGGAG
TATGTCGCTCAGCCTGCACCTCCGAACCCCTCCAGTAGCTAG
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