mRNA_Ecto-sp13_S_contig15413.4054.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15413.4054.1
Unique NamemRNA_Ecto-sp13_S_contig15413.4054.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15413.4054.1 vs. uniprot
Match: D8LS16_ECTSI (Hypothetical conserved protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS16_ECTSI)

HSP 1 Score: 246 bits (627), Expect = 2.020e-81
Identity = 127/160 (79.38%), Postives = 130/160 (81.25%), Query Frame = 1
Query:    1 MLRTCAAAALVACGLFVSLLSPAXXXXXXXXXXXXXISRDALTPSSSLQAQQQWTMGMEQIKVTKNPSEEEIKALGARSWPTWGCGVSTFPWTYEATPPAPXXXXQGTETCLILEGDVTVTPDDDRDAVEVGVGDLCVFPDGMNCTWDVRAPVKKHYKFE 480
            MLRT AAAALVACGL  SLLSPA             ISRDA TP SSLQAQQ+WTMGMEQIKVTK+PSEEEIKALGARSWPTWGCGVS FPWTYE           GTETCLILEGDVTVTPDDDRDAVEVGVGDLCVFPDGM+CTWDVRAPVKKHYKFE
Sbjct:    1 MLRTGAAAALVACGLSASLLSPACGFFLAPSSSFRGISRDAPTPPSSLQAQQRWTMGMEQIKVTKDPSEEEIKALGARSWPTWGCGVSKFPWTYE-----------GTETCLILEGDVTVTPDDDRDAVEVGVGDLCVFPDGMSCTWDVRAPVKKHYKFE 149          
BLAST of mRNA_Ecto-sp13_S_contig15413.4054.1 vs. uniprot
Match: A0A7S0WR75_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WR75_9CHLO)

HSP 1 Score: 128 bits (322), Expect = 2.360e-35
Identity = 60/105 (57.14%), Postives = 72/105 (68.57%), Query Frame = 1
Query:  163 TMGMEQIKVTKNPSEEEIKALGARSWPTWGCGVSTFPWTYEATPPAPXXXXQGTETCLILEGDVTVTPDDDRDAVEVGVGDLCVFPDGMNCTWDVRAPVKKHYKF 477
            T    +I VT+ P E+++KALG RSWPTWGCGVS FPWTY           Q TET  +LEG+VTVTP+   + VE+  GDLCVFP GM+CTWDVR P+ KHY F
Sbjct:   33 TKASAKITVTRTPPEDKLKALGVRSWPTWGCGVSKFPWTY-----------QETETAYLLEGEVTVTPNG-GEPVEIRAGDLCVFPAGMSCTWDVRKPINKHYDF 125          
BLAST of mRNA_Ecto-sp13_S_contig15413.4054.1 vs. uniprot
Match: A0A7T1HYH3_9SYNE (Cupin domain-containing protein n=4 Tax=Synechococcus sp. CBW1004 TaxID=1353136 RepID=A0A7T1HYH3_9SYNE)

HSP 1 Score: 123 bits (309), Expect = 1.040e-33
Identity = 56/99 (56.57%), Postives = 68/99 (68.69%), Query Frame = 1
Query:  181 IKVTKNPSEEEIKALGARSWPTWGCGVSTFPWTYEATPPAPXXXXQGTETCLILEGDVTVTPDDDRDAVEVGVGDLCVFPDGMNCTWDVRAPVKKHYKF 477
            I VT NP   E+++LG  SWPTWGCGVSTFPWTY+             ETCL+LEGDVTVTP+  +  V  G GDL VF  G++CTWDV AP++KHY+F
Sbjct:   14 ITVTSNPDPAELQSLGVTSWPTWGCGVSTFPWTYDEH-----------ETCLLLEGDVTVTPEGGK-PVRFGAGDLVVFEQGLSCTWDVHAPMRKHYRF 100          
BLAST of mRNA_Ecto-sp13_S_contig15413.4054.1 vs. uniprot
Match: A0A8J4LY75_9CHLO (Cupin_3 domain-containing protein n=4 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4LY75_9CHLO)

HSP 1 Score: 123 bits (309), Expect = 1.780e-33
Identity = 55/99 (55.56%), Postives = 66/99 (66.67%), Query Frame = 1
Query:  181 IKVTKNPSEEEIKALGARSWPTWGCGVSTFPWTYEATPPAPXXXXQGTETCLILEGDVTVTPDDDRDAVEVGVGDLCVFPDGMNCTWDVRAPVKKHYKF 477
            + V + P+E+ IKA G RSWPTWGCGVS FPWTY+             ETC ILEG V VTPD   +AVE+  GDL +FP GM+C WDV+AP+ KHY F
Sbjct:   31 VIVHRQPAEDVIKAKGVRSWPTWGCGVSKFPWTYKEN-----------ETCYILEGKVVVTPDAGGEAVEINAGDLAIFPAGMSCIWDVKAPIDKHYNF 118          
BLAST of mRNA_Ecto-sp13_S_contig15413.4054.1 vs. uniprot
Match: A0A2K3E5N5_CHLRE (Cupin_3 domain-containing protein n=3 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3E5N5_CHLRE)

HSP 1 Score: 121 bits (303), Expect = 1.110e-32
Identity = 57/114 (50.00%), Postives = 72/114 (63.16%), Query Frame = 1
Query:  136 SSLQAQQQWTMGMEQIKVTKNPSEEEIKALGARSWPTWGCGVSTFPWTYEATPPAPXXXXQGTETCLILEGDVTVTPDDDRDAVEVGVGDLCVFPDGMNCTWDVRAPVKKHYKF 477
            S +Q Q        +I V +NP+E+ +KA G RSWPTWGCGVS FPWTY           Q  ETC +LEGDV VTP+   + V++  GD+  FP GM+CTWDV+AP+ KHY F
Sbjct:    8 SQVQVQASSAKAAMKIVVQRNPAEDVLKAKGVRSWPTWGCGVSKFPWTY-----------QENETCYVLEGDVIVTPNG-GEPVQIKAGDMATFPAGMSCTWDVKAPINKHYNF 109          
BLAST of mRNA_Ecto-sp13_S_contig15413.4054.1 vs. uniprot
Match: A0A0A0KVZ0_CUCSA (Cupin_3 domain-containing protein n=3 Tax=Benincaseae TaxID=1003877 RepID=A0A0A0KVZ0_CUCSA)

HSP 1 Score: 122 bits (305), Expect = 1.260e-32
Identity = 56/100 (56.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:  181 IKVTKNPSEEEIKALGARSWPTWGCGVSTFPWTYEATPPAPXXXXQGTETCLILEGDVTVTPDDDRDAVEVGVGDLCVFPDGMNCTWDVRAPVKKHYKFE 480
            IKV KNPSE ++  LG R WP WGCG S FPWTY              ETC +LEG V VTP    ++VE+G GDL VFP GM+CTWDV   V KHYKFE
Sbjct:   50 IKVEKNPSESKLTELGVRQWPKWGCGPSKFPWTYSDK-----------ETCYLLEGKVKVTPAGSNESVEIGAGDLVVFPKGMSCTWDVSVAVDKHYKFE 138          
BLAST of mRNA_Ecto-sp13_S_contig15413.4054.1 vs. uniprot
Match: A0A8J6C5D4_DIALT (Cupin_3 domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C5D4_DIALT)

HSP 1 Score: 119 bits (299), Expect = 2.630e-32
Identity = 56/104 (53.85%), Postives = 69/104 (66.35%), Query Frame = 1
Query:  166 MGMEQIKVTKNPSEEEIKALGARSWPTWGCGVSTFPWTYEATPPAPXXXXQGTETCLILEGDVTVTPDDDRDAVEVGVGDLCVFPDGMNCTWDVRAPVKKHYKF 477
            MG E+I+V + PS  EI+ +    WPTWGC  S F WTY            G ETC I+EG+VTVTPDD R+AV VG GD+ VFPDGM+CTW V+  +KKHY+F
Sbjct:    1 MGGEEIQVNRAPSAGEIERM--TQWPTWGCAASEFEWTYS-----------GAETCYIVEGEVTVTPDDGREAVTVGKGDMVVFPDGMSCTWKVKRAIKKHYRF 91          
BLAST of mRNA_Ecto-sp13_S_contig15413.4054.1 vs. uniprot
Match: A0A834W9E1_9FABA (Putative fructokinase-5 isoform B n=1 Tax=Senna tora TaxID=362788 RepID=A0A834W9E1_9FABA)

HSP 1 Score: 120 bits (302), Expect = 3.380e-32
Identity = 55/100 (55.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:  181 IKVTKNPSEEEIKALGARSWPTWGCGVSTFPWTYEATPPAPXXXXQGTETCLILEGDVTVTPDDDRDAVEVGVGDLCVFPDGMNCTWDVRAPVKKHYKFE 480
            IK+ KNP EE++  LG R WP WGC  S FPWTYEA            ETC +LEG V VTP    ++VE+G GDL VFP GM+CTWDV   V KHY FE
Sbjct:   48 IKIEKNPPEEKLTQLGVRKWPKWGCPPSNFPWTYEAK-----------ETCYLLEGKVKVTPSGSDESVEIGAGDLVVFPKGMSCTWDVSVGVDKHYNFE 136          
BLAST of mRNA_Ecto-sp13_S_contig15413.4054.1 vs. uniprot
Match: A3Z061_9SYNE (Cupin_3 domain-containing protein n=5 Tax=Cyanobacteria TaxID=1117 RepID=A3Z061_9SYNE)

HSP 1 Score: 119 bits (297), Expect = 6.890e-32
Identity = 55/99 (55.56%), Postives = 66/99 (66.67%), Query Frame = 1
Query:  181 IKVTKNPSEEEIKALGARSWPTWGCGVSTFPWTYEATPPAPXXXXQGTETCLILEGDVTVTPDDDRDAVEVGVGDLCVFPDGMNCTWDVRAPVKKHYKF 477
            I VT NP   ++ +LG  +WPTWGC VSTFPWTY+             ETCL+LEGDVTVTPD  +  V  G GDL VF  G++CTWDV APV+KHY+F
Sbjct:   14 ITVTSNPDPAQLVSLGVSNWPTWGCEVSTFPWTYDEQ-----------ETCLLLEGDVTVTPDGGK-PVRFGAGDLVVFDAGLSCTWDVHAPVQKHYRF 100          
BLAST of mRNA_Ecto-sp13_S_contig15413.4054.1 vs. uniprot
Match: Q60B25_METCA (Cupin_3 domain-containing protein n=5 Tax=Methylococcus TaxID=413 RepID=Q60B25_METCA)

HSP 1 Score: 118 bits (296), Expect = 7.280e-32
Identity = 55/102 (53.92%), Postives = 64/102 (62.75%), Query Frame = 1
Query:  172 MEQIKVTKNPSEEEIKALGARSWPTWGCGVSTFPWTYEATPPAPXXXXQGTETCLILEGDVTVTPDDDRDAVEVGVGDLCVFPDGMNCTWDVRAPVKKHYKF 477
            M  IK+  NP E  +  LG R WPTW CGVS+FPWTY+ +           ETC ILEG+VTVTP    + V +G GDL  FP GM+CTWDV  PVKKHY F
Sbjct:    1 MPSIKIENNPPETRLGELGVRRWPTWSCGVSSFPWTYDES-----------ETCYILEGEVTVTPQG-GEPVRIGKGDLVTFPPGMSCTWDVHVPVKKHYTF 90          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15413.4054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS16_ECTSI2.020e-8179.38Hypothetical conserved protein n=1 Tax=Ectocarpus ... [more]
A0A7S0WR75_9CHLO2.360e-3557.14Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
A0A7T1HYH3_9SYNE1.040e-3356.57Cupin domain-containing protein n=4 Tax=Synechococ... [more]
A0A8J4LY75_9CHLO1.780e-3355.56Cupin_3 domain-containing protein n=4 Tax=Volvox r... [more]
A0A2K3E5N5_CHLRE1.110e-3250.00Cupin_3 domain-containing protein n=3 Tax=Chlamydo... [more]
A0A0A0KVZ0_CUCSA1.260e-3256.00Cupin_3 domain-containing protein n=3 Tax=Benincas... [more]
A0A8J6C5D4_DIALT2.630e-3253.85Cupin_3 domain-containing protein n=1 Tax=Diacrone... [more]
A0A834W9E1_9FABA3.380e-3255.00Putative fructokinase-5 isoform B n=1 Tax=Senna to... [more]
A3Z061_9SYNE6.890e-3255.56Cupin_3 domain-containing protein n=5 Tax=Cyanobac... [more]
Q60B25_METCA7.280e-3253.92Cupin_3 domain-containing protein n=5 Tax=Methyloc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15413contigEcto-sp13_S_contig15413:2709..4161 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score247.7
Seed ortholog evalue3.8e-63
Seed eggNOG ortholog2880.D8LS16
Model size483
KEGG koko:K06995
Hectar predicted targeting categorysignal peptide
Exons4
EggNOG free text desc.Protein of unknown function (DUF861)
EggNOG OGs2S172@2759,COG3450@1
Ec32 ortholog descriptionhypothetical conserved protein
Ec32 orthologEc-08_001770.1
Cds size483
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462819.2029703-CDS-Ecto-sp13_S_contig15413:2708..29021681462819.2029703-CDS-Ecto-sp13_S_contig15413:2708..2902Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15413 2709..2902 -
1681462819.2152588-CDS-Ecto-sp13_S_contig15413:3183..32861681462819.2152588-CDS-Ecto-sp13_S_contig15413:3183..3286Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15413 3184..3286 -
1681462819.2247047-CDS-Ecto-sp13_S_contig15413:3562..35921681462819.2247047-CDS-Ecto-sp13_S_contig15413:3562..3592Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15413 3563..3592 -
1681462819.234199-CDS-Ecto-sp13_S_contig15413:4005..41611681462819.234199-CDS-Ecto-sp13_S_contig15413:4005..4161Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15413 4006..4161 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15413.4054.1prot_Ecto-sp13_S_contig15413.4054.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15413 2709..4161 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15413.4054.1

>prot_Ecto-sp13_S_contig15413.4054.1 ID=prot_Ecto-sp13_S_contig15413.4054.1|Name=mRNA_Ecto-sp13_S_contig15413.4054.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=161bp
MLRTCAAAALVACGLFVSLLSPACGFFLAPLSPFRGISRDALTPSSSLQA
QQQWTMGMEQIKVTKNPSEEEIKALGARSWPTWGCGVSTFPWTYEATPPA
PPPPPQGTETCLILEGDVTVTPDDDRDAVEVGVGDLCVFPDGMNCTWDVR
APVKKHYKFE*
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mRNA from alignment at Ecto-sp13_S_contig15413:2709..4161-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15413.4054.1 ID=mRNA_Ecto-sp13_S_contig15413.4054.1|Name=mRNA_Ecto-sp13_S_contig15413.4054.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1453bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15413:2709..4161- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTCGAACCTGTGCTGCTGCTGCGCTTGTTGCGTGCGGTCTGTTTGT CTCTCTGTTGAGCCCTGCCTGCGGCTTCTTCCTAGCACCTTTGTCGCCGT TTCGAGGCATCAGCCGGGACGCTTTAACCCCGTCGTCGTCACTTCAGGCG CAACAGGTCATGTAAAGTCAACATGAACACGCACGAGGAGGGCTGTGAAT CTTCGCACGTTGACCACTCTGTCGTTCTTGTTGTAGGAGGAGGAGCTCTA CTTCTGTAGATGATCTCGTTGTTTTCTTCGCGACGAACGAAAGAAGGCCG CCTCGGTCAGTCACGCAGGGCTCCTGTGTAAGACCAACTACAACGTTCCC ACACAAGCATCCGGGTTGCTGGTGCTTACGGTACACCTTTTTTTCGCGCT GCTTGCCCGACCTCCGTCTTTCGTAACACTGACTCTATGACACTGCTGCT GCTGTACCCCTGTTGTTTGTGTTGGCGGATTGATTGTCGCTGGTGTACCG CGGGCTCTTGCGGCCGGCCTCTCTCTTTCTCGTCGGCCTCTCCCTCTTGT CTTCCTCCGGCTGTCCCAGCAGTGGACCATGGGCATGGAACAGATCAAGG TATAGGTAGGCCACGCACAAGTCGTTCGCTTCGAAAACGTTTCCCTCTTG TGATTCCTACTATTACATTCCTGTATCATGTTTTGTCTCTCTCTTATGCT TCCTACATTTAATACACTCCCGTATCATGACCCATAGGGGAAACTTTAGT CGTGAGCTTCAAGTGTCGGGGCCTCCTCTCTTCGTGAGACCGACTCGTCC CTCTATCATAGAGAGGAGAAGCTGCTATGATTGTTCATAGCCGTGTCATA CCCCCTTATCTCCATCTCACGATAGGTTACCAAGAACCCCAGCGAGGAGG AGATCAAGGCTCTCGGTGCCCGGAGCTGGCCGACGTGGGGTTGCGGTGTT TCGACGTTCCCCTGGACGTACGAGGCGAGTGGTCAACATACCTAAAGAGT ACATGTTCACATGCCACTCCGCTTCGCATCCTACTTTTTCTCACGGCAGT CGTCGTTGTTGCTACTGTTTTTGTTGCTGTTGTTGTTGTTCTTTCTTCTT CTTGTCCTTGTTCGTGCTGCTGTTGTTTTTGATGACGATGATGACGATGA TTATGGTGATTCCGTTTATGTTGTTGTTGATGTCTTTAAGCAGTCGCACA CCGCATTTGGCCCATTTACATACCTTTACAATCCCACACACACGTACACA TTCACAAAGCCCCCCCCGCGCCGCCACCGCCACCGCAGGGCACGGAAACC TGCCTCATCTTGGAGGGAGATGTGACCGTGACGCCCGATGACGACAGAGA CGCCGTCGAGGTCGGGGTAGGGGACCTTTGCGTGTTTCCCGACGGGATGA ACTGCACTTGGGACGTCAGGGCTCCCGTCAAGAAGCACTACAAGTTCGAG TAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15413:2709..4161-

>mRNA_Ecto-sp13_S_contig15413.4054.1 ID=mRNA_Ecto-sp13_S_contig15413.4054.1|Name=mRNA_Ecto-sp13_S_contig15413.4054.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=483bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15413:2709..4161- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTCGAACCTGTGCTGCTGCTGCGCTTGTTGCGTGCGGTCTGTTTGT
CTCTCTGTTGAGCCCTGCCTGCGGCTTCTTCCTAGCACCTTTGTCGCCGT
TTCGAGGCATCAGCCGGGACGCTTTAACCCCGTCGTCGTCACTTCAGGCG
CAACAGCAGTGGACCATGGGCATGGAACAGATCAAGGTTACCAAGAACCC
CAGCGAGGAGGAGATCAAGGCTCTCGGTGCCCGGAGCTGGCCGACGTGGG
GTTGCGGTGTTTCGACGTTCCCCTGGACGTACGAGGCGACCCCCCCCGCG
CCGCCACCGCCACCGCAGGGCACGGAAACCTGCCTCATCTTGGAGGGAGA
TGTGACCGTGACGCCCGATGACGACAGAGACGCCGTCGAGGTCGGGGTAG
GGGACCTTTGCGTGTTTCCCGACGGGATGAACTGCACTTGGGACGTCAGG
GCTCCCGTCAAGAAGCACTACAAGTTCGAGTAG
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