mRNA_Ecto-sp13_S_contig1540.4045.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1540.4045.1 vs. uniprot
Match: UPI0010A057C6 (zinc finger BED domain-containing protein 1-like n=1 Tax=Erpetoichthys calabaricus TaxID=27687 RepID=UPI0010A057C6) HSP 1 Score: 65.5 bits (158), Expect = 8.960e-10 Identity = 41/125 (32.80%), Postives = 67/125 (53.60%), Query Frame = 1
Query: 1 FMAVTGRWIREDKPELVSTTLGCVEFPGSHTSERLAEKVIDVMEMYGIQDTAVALTTDTAANIKKAGKKLLRPEWHACSCHVLQLCANKILDDPSVKATFAKHNRLTGHLHSSASSMDKLKTLQK 375
+M+VT +I K +V+ L C EF HTS+ LAE++++V + + +++ V +D AANI KA K+L+ H C H + L L +K T K + H S ++ +KLK+ Q+
Sbjct: 201 YMSVTCHFIENYK--MVTCLLDCFEFSDRHTSDNLAEELLNVAKEWDVENKVVCCVSDNAANIIKA-IKILKWTHHPCLAHTINLFVRDALK--VMKPTVDKVKAIVEFFHRSTTATEKLKSTQR 320
BLAST of mRNA_Ecto-sp13_S_contig1540.4045.1 vs. uniprot
Match: UPI0018D0C22E (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Plutella xylostella TaxID=51655 RepID=UPI0018D0C22E) HSP 1 Score: 64.3 bits (155), Expect = 2.280e-9 Identity = 42/127 (33.07%), Postives = 66/127 (51.97%), Query Frame = 1
Query: 1 FMAVTGRWIREDKPELVSTTLGCVEFPGSHTSERLAEKVIDVMEM-YGIQDTAVALTTDTAANIKKAGKKLLRPEWHACSCHVLQLCANKILDDPSVKATFA-KHNRLTGHLHSSASSMDKLKTLQK 375
+M +T +I E+K + TL E +HTSE LA ++ D++E + I D + +TTD AANIKKA +L+ H+C+ H L L L D + K + + S ++ KLK +Q+
Sbjct: 205 YMTLTIHFIHENK--FKTLTLSTREVKDAHTSENLAREMKDILETEWNILDKIICVTTDNAANIKKAVIDILQKRHHSCAAHTLNLVVQDTLKDNELLIRMTDKCREIVTYFKRSNNAAYKLKEVQE 329
BLAST of mRNA_Ecto-sp13_S_contig1540.4045.1 vs. uniprot
Match: UPI001C1A7FCD (Hypothetical protein n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C1A7FCD) HSP 1 Score: 63.5 bits (153), Expect = 4.110e-9 Identity = 37/109 (33.94%), Postives = 59/109 (54.13%), Query Frame = 1
Query: 49 VSTTLGCVEFPGSHTSERLAEKVIDVMEMYGIQDTAVALTTDTAANIKKAGKKLLRPEWHACSCHVLQLCANKILDDPSVKATFAKHNRLTGHLHSSASSMDKLKTLQK 375
++ T+ V +P HT++ + E + +++E + ++D +TTD AAN+KKA + EW CS H+LQL K L VKA + RL S ++LK +QK
Sbjct: 208 ITLTVNYVRYP--HTAQHITESLEEILEKWNLRDKVFTITTDNAANMKKAISNMNAVEWQECSAHILQLIIGKGL--VPVKALIMRVKRLIEFFLRPKQS-ERLKDIQK 311
BLAST of mRNA_Ecto-sp13_S_contig1540.4045.1 vs. uniprot
Match: UPI00143DAE0F (zinc finger BED domain-containing protein 1-like n=1 Tax=Belonocnema kinseyi TaxID=2817044 RepID=UPI00143DAE0F) HSP 1 Score: 61.6 bits (148), Expect = 1.840e-8 Identity = 46/144 (31.94%), Postives = 71/144 (49.31%), Query Frame = 1
Query: 1 FMAVTGRWIREDKPELVSTTLGCVEFPGSHTSERLAEKVIDVMEMYGIQ-DTAVALTTDTAANIKKAGKKLLRPEWH-ACSCHVLQLCANKILD------DPSVKA----TFAKHNRLTGHLHSSASSMDKLKTLQKVRYGVGF 396
F+ +T ++ D ++ + LGC EFP SHTS + EK+ +V + I+ D A+ TD A+N+ KA K L E H C+ H + L A ++ D K T+ KH+ + + SS+ KLK K R+ F
Sbjct: 48 FLGITAHFL--DGSKMATVILGCYEFPKSHTSANITEKIQEVCADWSIRKDQLSAIVTDNASNVVKAVKDFLDVEGHIGCAAHKINLIAQNSIEGVTGLPDLIQKVRNIVTWFKHSNKASYELKAGSSL-KLKQDVKTRWNSTF 188
BLAST of mRNA_Ecto-sp13_S_contig1540.4045.1 vs. uniprot
Match: UPI001F8DAAAB (Uncharacterized protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=UPI001F8DAAAB) HSP 1 Score: 60.8 bits (146), Expect = 3.030e-8 Identity = 41/127 (32.28%), Postives = 66/127 (51.97%), Query Frame = 1
Query: 1 FMAVTGRWIREDKPELVSTTLGCVEFPGSHTSERLAEKVIDVMEM-YGIQDTAVALTTDTAANIKKAGKKLLRPEWHACSCHVLQLCA-NKILDDPSVKATFAKHNRLTGHLHSSASSMDKLKTLQK 375
+M +T +I + K + TL E +HTSE LA ++ D+ E + I D + +TTD AANIKKA +L+ H+C+ H L L + I D+ + K + + S ++ KLK +Q+
Sbjct: 211 YMTLTIHFIYDGK--FKTLTLSTREIKDTHTSENLAREMKDICETEWNILDKIICVTTDNAANIKKAVIDILQKRHHSCAAHTLNLVVQDTIKDNELLIRLIEKCRAIVAYFKRSNNAAYKLKQVQE 335
BLAST of mRNA_Ecto-sp13_S_contig1540.4045.1 vs. uniprot
Match: A0A015J1A6_RHIIW (Uncharacterized protein n=1 Tax=Rhizophagus irregularis (strain DAOM 197198w) TaxID=1432141 RepID=A0A015J1A6_RHIIW) HSP 1 Score: 58.9 bits (141), Expect = 3.160e-8 Identity = 26/73 (35.62%), Postives = 43/73 (58.90%), Query Frame = 1
Query: 49 VSTTLGCVEFPGSHTSERLAEKVIDVMEMYGIQDTAVALTTDTAANIKKAGKKLLRPEWHACSCHVLQLCANK 267
++ T+ V +P HT++ + E + +++E + ++D +TTD AAN+KKA + EW CS H LQL K
Sbjct: 37 ITLTVNYVRYP--HTAQHITESLEEILEKWNLRDKVFTITTDNAANMKKAISNMNAVEWQGCSTHTLQLIIEK 107
BLAST of mRNA_Ecto-sp13_S_contig1540.4045.1 vs. uniprot
Match: UPI001C197A25 (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C197A25) HSP 1 Score: 59.3 bits (142), Expect = 1.210e-7 Identity = 36/109 (33.03%), Postives = 56/109 (51.38%), Query Frame = 1
Query: 49 VSTTLGCVEFPGSHTSERLAEKVIDVMEMYGIQDTAVALTTDTAANIKKAGKKLLRPEWHACSCHVLQLCANKILDDPSVKATFAKHNRLTGHLHSSASSMDKLKTLQK 375
++ T+ V +P HT++ +AE + +V + ++D +TTD AAN+KKA + W CS H LQL K L VKA + RL S ++L+ +QK
Sbjct: 65 ITLTVNYVRYP--HTAQHVAESLDEVFNEWNLRDKVFTITTDNAANMKKAIASMSNIRWQECSAHTLQLIVGKAL--VPVKALIMRVKRLIKFFMRPKQS-ERLEDIQK 168
BLAST of mRNA_Ecto-sp13_S_contig1540.4045.1 vs. uniprot
Match: A0A1D2M2M3_ORCCI (Putative AC9 transposase n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2M2M3_ORCCI) HSP 1 Score: 58.5 bits (140), Expect = 2.140e-7 Identity = 34/80 (42.50%), Postives = 45/80 (56.25%), Query Frame = 1
Query: 1 FMAVTGRWIREDKPELVSTTLGCVEFPGSHTSERLAEKVIDVMEMYGIQ-DTAVALTTDTAANIKKAGKKLLRPEWHACS 237
F+ VT WI +D S L C F G H+ +R+AE++I VM MYGIQ + VA+ TD +N KA K+ HA S
Sbjct: 134 FLGVTCHWINQDFSR-ESRVLACTRFKGVHSYDRIAEQLISVMNMYGIQKEQVVAIVTDNGSNFCKAFKEFGIEFEHAAS 212
BLAST of mRNA_Ecto-sp13_S_contig1540.4045.1 vs. uniprot
Match: UPI00143D5482 (zinc finger BED domain-containing protein 1-like n=1 Tax=Belonocnema kinseyi TaxID=2817044 RepID=UPI00143D5482) HSP 1 Score: 58.5 bits (140), Expect = 2.240e-7 Identity = 45/135 (33.33%), Postives = 68/135 (50.37%), Query Frame = 1
Query: 1 FMAVTGRWIREDKPELVSTTLGCVEFPGSHTSERLAEKVIDVMEMYGIQ-DTAVALTTDTAANIKKAGKKLLRPEWH-ACSCHVLQLCA-NKILDDPSVKATFAK-HNRLTGHLHSSASSMD-KLKTLQKVRYGV 390
F+ +T ++ D ++ + LGC EFP SHTS + EK+ + GI+ D A+ TD A+N+ KA K L E H C+ + L A N I + K N +T HS+ +S + K +L K+ GV
Sbjct: 104 FLGITVHFL--DGSKMATVILGCYEFPKSHTSANITEKIQEACADRGIRKDQLSAIVTDNASNVVKAVKDFLEVEGHIGCAARKINLIAQNSIEGVTGLPGLIQKVRNIVTWCKHSNKASYELKAGSLLKLEQGV 236
BLAST of mRNA_Ecto-sp13_S_contig1540.4045.1 vs. uniprot
Match: UPI001C1AB16C (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C1AB16C) HSP 1 Score: 57.4 bits (137), Expect = 5.810e-7 Identity = 27/75 (36.00%), Postives = 42/75 (56.00%), Query Frame = 1
Query: 49 VSTTLGCVEFPGSHTSERLAEKVIDVMEMYGIQDTAVALTTDTAANIKKAGKKLLRPEWHACSCHVLQLCANKIL 273
++ T+ V +P HT++ +AE + +V + ++D +TTD AAN+KKA + W CS H LQL K L
Sbjct: 191 ITLTVNYVRYP--HTAQHVAESLEEVFNEWNLRDKVFTITTDNAANMKKAIASMSNIRWQGCSAHTLQLIVGKAL 263 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1540.4045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1540.4045.1 >prot_Ecto-sp13_S_contig1540.4045.1 ID=prot_Ecto-sp13_S_contig1540.4045.1|Name=mRNA_Ecto-sp13_S_contig1540.4045.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=133bp MAVTGRWIREDKPELVSTTLGCVEFPGSHTSERLAEKVIDVMEMYGIQDTback to top mRNA from alignment at Ecto-sp13_S_contig1540:13781..14182- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1540.4045.1 ID=mRNA_Ecto-sp13_S_contig1540.4045.1|Name=mRNA_Ecto-sp13_S_contig1540.4045.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=402bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1540:13781..14182- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1540:13781..14182- >mRNA_Ecto-sp13_S_contig1540.4045.1 ID=mRNA_Ecto-sp13_S_contig1540.4045.1|Name=mRNA_Ecto-sp13_S_contig1540.4045.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=399bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1540:13781..14182- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |