mRNA_Ecto-sp13_S_contig1540.4045.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1540.4045.1
Unique NamemRNA_Ecto-sp13_S_contig1540.4045.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1540.4045.1 vs. uniprot
Match: UPI0010A057C6 (zinc finger BED domain-containing protein 1-like n=1 Tax=Erpetoichthys calabaricus TaxID=27687 RepID=UPI0010A057C6)

HSP 1 Score: 65.5 bits (158), Expect = 8.960e-10
Identity = 41/125 (32.80%), Postives = 67/125 (53.60%), Query Frame = 1
Query:    1 FMAVTGRWIREDKPELVSTTLGCVEFPGSHTSERLAEKVIDVMEMYGIQDTAVALTTDTAANIKKAGKKLLRPEWHACSCHVLQLCANKILDDPSVKATFAKHNRLTGHLHSSASSMDKLKTLQK 375
            +M+VT  +I   K  +V+  L C EF   HTS+ LAE++++V + + +++  V   +D AANI KA  K+L+   H C  H + L     L    +K T  K   +    H S ++ +KLK+ Q+
Sbjct:  201 YMSVTCHFIENYK--MVTCLLDCFEFSDRHTSDNLAEELLNVAKEWDVENKVVCCVSDNAANIIKA-IKILKWTHHPCLAHTINLFVRDALK--VMKPTVDKVKAIVEFFHRSTTATEKLKSTQR 320          
BLAST of mRNA_Ecto-sp13_S_contig1540.4045.1 vs. uniprot
Match: UPI0018D0C22E (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Plutella xylostella TaxID=51655 RepID=UPI0018D0C22E)

HSP 1 Score: 64.3 bits (155), Expect = 2.280e-9
Identity = 42/127 (33.07%), Postives = 66/127 (51.97%), Query Frame = 1
Query:    1 FMAVTGRWIREDKPELVSTTLGCVEFPGSHTSERLAEKVIDVMEM-YGIQDTAVALTTDTAANIKKAGKKLLRPEWHACSCHVLQLCANKILDDPSVKATFA-KHNRLTGHLHSSASSMDKLKTLQK 375
            +M +T  +I E+K    + TL   E   +HTSE LA ++ D++E  + I D  + +TTD AANIKKA   +L+   H+C+ H L L     L D  +      K   +  +   S ++  KLK +Q+
Sbjct:  205 YMTLTIHFIHENK--FKTLTLSTREVKDAHTSENLAREMKDILETEWNILDKIICVTTDNAANIKKAVIDILQKRHHSCAAHTLNLVVQDTLKDNELLIRMTDKCREIVTYFKRSNNAAYKLKEVQE 329          
BLAST of mRNA_Ecto-sp13_S_contig1540.4045.1 vs. uniprot
Match: UPI001C1A7FCD (Hypothetical protein n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C1A7FCD)

HSP 1 Score: 63.5 bits (153), Expect = 4.110e-9
Identity = 37/109 (33.94%), Postives = 59/109 (54.13%), Query Frame = 1
Query:   49 VSTTLGCVEFPGSHTSERLAEKVIDVMEMYGIQDTAVALTTDTAANIKKAGKKLLRPEWHACSCHVLQLCANKILDDPSVKATFAKHNRLTGHLHSSASSMDKLKTLQK 375
            ++ T+  V +P  HT++ + E + +++E + ++D    +TTD AAN+KKA   +   EW  CS H+LQL   K L    VKA   +  RL         S ++LK +QK
Sbjct:  208 ITLTVNYVRYP--HTAQHITESLEEILEKWNLRDKVFTITTDNAANMKKAISNMNAVEWQECSAHILQLIIGKGL--VPVKALIMRVKRLIEFFLRPKQS-ERLKDIQK 311          
BLAST of mRNA_Ecto-sp13_S_contig1540.4045.1 vs. uniprot
Match: UPI00143DAE0F (zinc finger BED domain-containing protein 1-like n=1 Tax=Belonocnema kinseyi TaxID=2817044 RepID=UPI00143DAE0F)

HSP 1 Score: 61.6 bits (148), Expect = 1.840e-8
Identity = 46/144 (31.94%), Postives = 71/144 (49.31%), Query Frame = 1
Query:    1 FMAVTGRWIREDKPELVSTTLGCVEFPGSHTSERLAEKVIDVMEMYGIQ-DTAVALTTDTAANIKKAGKKLLRPEWH-ACSCHVLQLCANKILD------DPSVKA----TFAKHNRLTGHLHSSASSMDKLKTLQKVRYGVGF 396
            F+ +T  ++  D  ++ +  LGC EFP SHTS  + EK+ +V   + I+ D   A+ TD A+N+ KA K  L  E H  C+ H + L A   ++      D   K     T+ KH+    +   + SS+ KLK   K R+   F
Sbjct:   48 FLGITAHFL--DGSKMATVILGCYEFPKSHTSANITEKIQEVCADWSIRKDQLSAIVTDNASNVVKAVKDFLDVEGHIGCAAHKINLIAQNSIEGVTGLPDLIQKVRNIVTWFKHSNKASYELKAGSSL-KLKQDVKTRWNSTF 188          
BLAST of mRNA_Ecto-sp13_S_contig1540.4045.1 vs. uniprot
Match: UPI001F8DAAAB (Uncharacterized protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=UPI001F8DAAAB)

HSP 1 Score: 60.8 bits (146), Expect = 3.030e-8
Identity = 41/127 (32.28%), Postives = 66/127 (51.97%), Query Frame = 1
Query:    1 FMAVTGRWIREDKPELVSTTLGCVEFPGSHTSERLAEKVIDVMEM-YGIQDTAVALTTDTAANIKKAGKKLLRPEWHACSCHVLQLCA-NKILDDPSVKATFAKHNRLTGHLHSSASSMDKLKTLQK 375
            +M +T  +I + K    + TL   E   +HTSE LA ++ D+ E  + I D  + +TTD AANIKKA   +L+   H+C+ H L L   + I D+  +     K   +  +   S ++  KLK +Q+
Sbjct:  211 YMTLTIHFIYDGK--FKTLTLSTREIKDTHTSENLAREMKDICETEWNILDKIICVTTDNAANIKKAVIDILQKRHHSCAAHTLNLVVQDTIKDNELLIRLIEKCRAIVAYFKRSNNAAYKLKQVQE 335          
BLAST of mRNA_Ecto-sp13_S_contig1540.4045.1 vs. uniprot
Match: A0A015J1A6_RHIIW (Uncharacterized protein n=1 Tax=Rhizophagus irregularis (strain DAOM 197198w) TaxID=1432141 RepID=A0A015J1A6_RHIIW)

HSP 1 Score: 58.9 bits (141), Expect = 3.160e-8
Identity = 26/73 (35.62%), Postives = 43/73 (58.90%), Query Frame = 1
Query:   49 VSTTLGCVEFPGSHTSERLAEKVIDVMEMYGIQDTAVALTTDTAANIKKAGKKLLRPEWHACSCHVLQLCANK 267
            ++ T+  V +P  HT++ + E + +++E + ++D    +TTD AAN+KKA   +   EW  CS H LQL   K
Sbjct:   37 ITLTVNYVRYP--HTAQHITESLEEILEKWNLRDKVFTITTDNAANMKKAISNMNAVEWQGCSTHTLQLIIEK 107          
BLAST of mRNA_Ecto-sp13_S_contig1540.4045.1 vs. uniprot
Match: UPI001C197A25 (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C197A25)

HSP 1 Score: 59.3 bits (142), Expect = 1.210e-7
Identity = 36/109 (33.03%), Postives = 56/109 (51.38%), Query Frame = 1
Query:   49 VSTTLGCVEFPGSHTSERLAEKVIDVMEMYGIQDTAVALTTDTAANIKKAGKKLLRPEWHACSCHVLQLCANKILDDPSVKATFAKHNRLTGHLHSSASSMDKLKTLQK 375
            ++ T+  V +P  HT++ +AE + +V   + ++D    +TTD AAN+KKA   +    W  CS H LQL   K L    VKA   +  RL         S ++L+ +QK
Sbjct:   65 ITLTVNYVRYP--HTAQHVAESLDEVFNEWNLRDKVFTITTDNAANMKKAIASMSNIRWQECSAHTLQLIVGKAL--VPVKALIMRVKRLIKFFMRPKQS-ERLEDIQK 168          
BLAST of mRNA_Ecto-sp13_S_contig1540.4045.1 vs. uniprot
Match: A0A1D2M2M3_ORCCI (Putative AC9 transposase n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2M2M3_ORCCI)

HSP 1 Score: 58.5 bits (140), Expect = 2.140e-7
Identity = 34/80 (42.50%), Postives = 45/80 (56.25%), Query Frame = 1
Query:    1 FMAVTGRWIREDKPELVSTTLGCVEFPGSHTSERLAEKVIDVMEMYGIQ-DTAVALTTDTAANIKKAGKKLLRPEWHACS 237
            F+ VT  WI +D     S  L C  F G H+ +R+AE++I VM MYGIQ +  VA+ TD  +N  KA K+      HA S
Sbjct:  134 FLGVTCHWINQDFSR-ESRVLACTRFKGVHSYDRIAEQLISVMNMYGIQKEQVVAIVTDNGSNFCKAFKEFGIEFEHAAS 212          
BLAST of mRNA_Ecto-sp13_S_contig1540.4045.1 vs. uniprot
Match: UPI00143D5482 (zinc finger BED domain-containing protein 1-like n=1 Tax=Belonocnema kinseyi TaxID=2817044 RepID=UPI00143D5482)

HSP 1 Score: 58.5 bits (140), Expect = 2.240e-7
Identity = 45/135 (33.33%), Postives = 68/135 (50.37%), Query Frame = 1
Query:    1 FMAVTGRWIREDKPELVSTTLGCVEFPGSHTSERLAEKVIDVMEMYGIQ-DTAVALTTDTAANIKKAGKKLLRPEWH-ACSCHVLQLCA-NKILDDPSVKATFAK-HNRLTGHLHSSASSMD-KLKTLQKVRYGV 390
            F+ +T  ++  D  ++ +  LGC EFP SHTS  + EK+ +     GI+ D   A+ TD A+N+ KA K  L  E H  C+   + L A N I     +     K  N +T   HS+ +S + K  +L K+  GV
Sbjct:  104 FLGITVHFL--DGSKMATVILGCYEFPKSHTSANITEKIQEACADRGIRKDQLSAIVTDNASNVVKAVKDFLEVEGHIGCAARKINLIAQNSIEGVTGLPGLIQKVRNIVTWCKHSNKASYELKAGSLLKLEQGV 236          
BLAST of mRNA_Ecto-sp13_S_contig1540.4045.1 vs. uniprot
Match: UPI001C1AB16C (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C1AB16C)

HSP 1 Score: 57.4 bits (137), Expect = 5.810e-7
Identity = 27/75 (36.00%), Postives = 42/75 (56.00%), Query Frame = 1
Query:   49 VSTTLGCVEFPGSHTSERLAEKVIDVMEMYGIQDTAVALTTDTAANIKKAGKKLLRPEWHACSCHVLQLCANKIL 273
            ++ T+  V +P  HT++ +AE + +V   + ++D    +TTD AAN+KKA   +    W  CS H LQL   K L
Sbjct:  191 ITLTVNYVRYP--HTAQHVAESLEEVFNEWNLRDKVFTITTDNAANMKKAIASMSNIRWQGCSAHTLQLIVGKAL 263          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1540.4045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
UPI0010A057C68.960e-1032.80zinc finger BED domain-containing protein 1-like n... [more]
UPI0018D0C22E2.280e-933.07E3 SUMO-protein ligase ZBED1-like n=1 Tax=Plutella... [more]
UPI001C1A7FCD4.110e-933.94Hypothetical protein n=2 Tax=Rhizophagus irregular... [more]
UPI00143DAE0F1.840e-831.94zinc finger BED domain-containing protein 1-like n... [more]
UPI001F8DAAAB3.030e-832.28Uncharacterized protein n=1 Tax=Spodoptera exigua ... [more]
A0A015J1A6_RHIIW3.160e-835.62Uncharacterized protein n=1 Tax=Rhizophagus irregu... [more]
UPI001C197A251.210e-733.03Hypothetical protein n=1 Tax=Rhizophagus irregular... [more]
A0A1D2M2M3_ORCCI2.140e-742.50Putative AC9 transposase n=1 Tax=Orchesella cincta... [more]
UPI00143D54822.240e-733.33zinc finger BED domain-containing protein 1-like n... [more]
UPI001C1AB16C5.810e-736.00Hypothetical protein n=1 Tax=Rhizophagus irregular... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1540contigEcto-sp13_S_contig1540:13781..14182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeMetazoa
Stop1
Start1
Seed ortholog score67.0
Seed ortholog evalue7.5e-09
Seed eggNOG ortholog244447.XP_008334929.1
Model size402
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.zinc finger BED domain-containing protein
EggNOG OGs39TTD@33154,3BCXB@33208,3CYBV@33213,48EX4@7711,49BNC@7742,4A3ED@7898,KOG1121@1,KOG1121@2759
Cds size399
COG Functional cat.L
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462818.5505326-CDS-Ecto-sp13_S_contig1540:13780..141791681462818.5505326-CDS-Ecto-sp13_S_contig1540:13780..14179Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1540 13781..14179 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462818.5604737-UTR-Ecto-sp13_S_contig1540:14179..141821681462818.5604737-UTR-Ecto-sp13_S_contig1540:14179..14182Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1540 14180..14182 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1540.4045.1prot_Ecto-sp13_S_contig1540.4045.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1540 13781..14179 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1540.4045.1

>prot_Ecto-sp13_S_contig1540.4045.1 ID=prot_Ecto-sp13_S_contig1540.4045.1|Name=mRNA_Ecto-sp13_S_contig1540.4045.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=133bp
MAVTGRWIREDKPELVSTTLGCVEFPGSHTSERLAEKVIDVMEMYGIQDT
AVALTTDTAANIKKAGKKLLRPEWHACSCHVLQLCANKILDDPSVKATFA
KHNRLTGHLHSSASSMDKLKTLQKVRYGVGFS*
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mRNA from alignment at Ecto-sp13_S_contig1540:13781..14182-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1540.4045.1 ID=mRNA_Ecto-sp13_S_contig1540.4045.1|Name=mRNA_Ecto-sp13_S_contig1540.4045.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=402bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1540:13781..14182- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCATGGCTGTTACGGGACGTTGGATCCGTGAGGACAAGCCCGAGCTCGT TTCTACCACCCTTGGCTGCGTCGAGTTCCCGGGAAGCCACACATCCGAGC GCCTCGCCGAGAAGGTAATTGACGTGATGGAGATGTACGGCATCCAGGAC ACCGCGGTGGCGTTGACGACCGACACGGCGGCAAACATCAAGAAGGCCGG CAAGAAGCTCCTCAGACCGGAGTGGCACGCGTGCAGCTGTCACGTGCTTC AGCTGTGCGCCAACAAGATCCTCGACGACCCAAGCGTCAAGGCCACGTTC GCCAAGCACAACAGGCTGACCGGCCACCTCCACTCGTCCGCGTCTTCTAT GGACAAGTTGAAAACTTTGCAAAAGGTACGCTACGGTGTTGGCTTTTCTT AG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1540:13781..14182-

>mRNA_Ecto-sp13_S_contig1540.4045.1 ID=mRNA_Ecto-sp13_S_contig1540.4045.1|Name=mRNA_Ecto-sp13_S_contig1540.4045.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=399bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1540:13781..14182- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTGTTACGGGACGTTGGATCCGTGAGGACAAGCCCGAGCTCGTTTC
TACCACCCTTGGCTGCGTCGAGTTCCCGGGAAGCCACACATCCGAGCGCC
TCGCCGAGAAGGTAATTGACGTGATGGAGATGTACGGCATCCAGGACACC
GCGGTGGCGTTGACGACCGACACGGCGGCAAACATCAAGAAGGCCGGCAA
GAAGCTCCTCAGACCGGAGTGGCACGCGTGCAGCTGTCACGTGCTTCAGC
TGTGCGCCAACAAGATCCTCGACGACCCAAGCGTCAAGGCCACGTTCGCC
AAGCACAACAGGCTGACCGGCCACCTCCACTCGTCCGCGTCTTCTATGGA
CAAGTTGAAAACTTTGCAAAAGGTACGCTACGGTGTTGGCTTTTCTTAG
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