prot_Ecto-sp13_S_contig154.4042.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig154.4042.1
Unique Nameprot_Ecto-sp13_S_contig154.4042.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length64
Homology
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BLAST of mRNA_Ecto-sp13_S_contig154.4042.1 vs. uniprot
Match: D8LJ44_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ44_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.100e-21
Identity = 44/63 (69.84%), Postives = 53/63 (84.13%), Query Frame = 0 
Query:    1 MGSTTFTDNSAYRGGAIYTDNGFLEDGDPLSITTFPDDTVFEGNRADNCPDVSNGDDDNCPEV 63
            MGSTTF +N+AY GGAIYTD+G + +G+  S+TTFPDDTVFE NRAD CPDV +GD+DNCP V
Sbjct:  319 MGSTTFRENAAYEGGAIYTDDGSVANGEAASVTTFPDDTVFEDNRADFCPDVFDGDNDNCPVV 381
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BLAST of mRNA_Ecto-sp13_S_contig154.4042.1 vs. uniprot
Match: D7FLJ6_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ6_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 2.940e-21
Identity = 43/63 (68.25%), Postives = 52/63 (82.54%), Query Frame = 0 
Query:    1 MGSTTFTDNSAYRGGAIYTDNGFLEDGDPLSITTFPDDTVFEGNRADNCPDVSNGDDDNCPEV 63
            MGSTTF +N+A+ GGAIYT +G  E+G+P S+TTFPDDTVFE N A++CPDV NGD DNCP V
Sbjct:  319 MGSTTFRENAAFMGGAIYTSDGDEENGEPASVTTFPDDTVFEDNSAEHCPDVHNGDSDNCPVV 381
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BLAST of mRNA_Ecto-sp13_S_contig154.4042.1 vs. uniprot
Match: D7FQG1_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQG1_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 5.780e-18
Identity = 42/64 (65.62%), Postives = 48/64 (75.00%), Query Frame = 0 
Query:    1 MGSTTFTDNSAYRGGAIYTDNGFLEDGDPLSITTFPDDTVFEGNRADN-CPDVSNGDDDNCPEV 63
            MG TTF +N A+ GGAIYTD+G+     P S+TTFPDDTVFE N AD  CPDV NGDD+NCP V
Sbjct:  114 MGPTTFRENGAWWGGAIYTDDGY-----PASVTTFPDDTVFEDNSADAYCPDVHNGDDNNCPVV 172
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BLAST of mRNA_Ecto-sp13_S_contig154.4042.1 vs. uniprot
Match: D7FL58_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL58_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 6.810e-8
Identity = 31/50 (62.00%), Postives = 35/50 (70.00%), Query Frame = 0 
Query:   14 GGAIYTDNGFLEDGDPLSITTFPDDTVFEGNRADNCPDVSNGDDDNCPEV 63
            GGAIYT++    DG P S+TTFPDD      RA+ CPDV NGDDDNCP V
Sbjct:  217 GGAIYTNDA---DG-PGSVTTFPDDXXXXXXRAEYCPDVHNGDDDNCPVV 262
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig154.4042.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LJ44_ECTSI1.100e-2169.84Asn/thr-rich large protein family protein n=1 Tax=... [more]
D7FLJ6_ECTSI2.940e-2168.25Asn/thr-rich large protein family protein n=1 Tax=... [more]
D7FQG1_ECTSI5.780e-1865.63Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7FL58_ECTSI6.810e-862.00Asn/thr-rich large protein family protein n=1 Tax=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003368Polymorphic outer membrane protein repeatTIGRFAMTIGR01376TIGR01376coord: 2..20
e-value: 1.1E-5
score: 23.1
IPR003368Polymorphic outer membrane protein repeatPFAMPF02415Chlam_PMPcoord: 3..19
e-value: 0.0022
score: 18.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig154contigEcto-sp13_S_contig154:16745..18390 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig154.4042.1mRNA_Ecto-sp13_S_contig154.4042.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig154 15313..18520 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig154.4042.1 ID=prot_Ecto-sp13_S_contig154.4042.1|Name=mRNA_Ecto-sp13_S_contig154.4042.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=64bp
MGSTTFTDNSAYRGGAIYTDNGFLEDGDPLSITTFPDDTVFEGNRADNCP
DVSNGDDDNCPEV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003368POMP_repeat