mRNA_Ecto-sp13_S_contig154.4042.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig154.4042.1
Unique NamemRNA_Ecto-sp13_S_contig154.4042.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig154.4042.1 vs. uniprot
Match: D8LJ44_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ44_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 2.100e-31
Identity = 61/87 (70.11%), Postives = 72/87 (82.76%), Query Frame = 1 
Query:   52 GPPGSGDGGVGGAIFNGNGERVTLMGSTTFTDNSAYRGGAIYTDNGFLEDGDPLSITTFPDDTVFEGNRADNCPDVSNGDDDNCPEV 312
            G  GSGDGG+GGAI+NGN   VTLMGSTTF +N+AY GGAIYTD+G + +G+  S+TTFPDDTVFE NRAD CPDV +GD+DNCP V
Sbjct:  295 GASGSGDGGLGGAIYNGNEGAVTLMGSTTFRENAAYEGGAIYTDDGSVANGEAASVTTFPDDTVFEDNRADFCPDVFDGDNDNCPVV 381
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BLAST of mRNA_Ecto-sp13_S_contig154.4042.1 vs. uniprot
Match: D7FLJ6_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ6_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 8.430e-30
Identity = 59/87 (67.82%), Postives = 70/87 (80.46%), Query Frame = 1 
Query:   52 GPPGSGDGGVGGAIFNGNGERVTLMGSTTFTDNSAYRGGAIYTDNGFLEDGDPLSITTFPDDTVFEGNRADNCPDVSNGDDDNCPEV 312
            G  GSGDGG+GGAI+N N   VTLMGSTTF +N+A+ GGAIYT +G  E+G+P S+TTFPDDTVFE N A++CPDV NGD DNCP V
Sbjct:  295 GASGSGDGGLGGAIYNTNAGVVTLMGSTTFRENAAFMGGAIYTSDGDEENGEPASVTTFPDDTVFEDNSAEHCPDVHNGDSDNCPVV 381
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BLAST of mRNA_Ecto-sp13_S_contig154.4042.1 vs. uniprot
Match: D7FQG1_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQG1_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 4.060e-24
Identity = 55/82 (67.07%), Postives = 61/82 (74.39%), Query Frame = 1 
Query:   70 DGGVGGAIFNGNGERVTLMGSTTFTDNSAYRGGAIYTDNGFLEDGDPLSITTFPDDTVFEGNRADN-CPDVSNGDDDNCPEV 312
            DGG GGAI N NG  VTLMG TTF +N A+ GGAIYTD+G+     P S+TTFPDDTVFE N AD  CPDV NGDD+NCP V
Sbjct:   96 DGGRGGAIHNRNGGVVTLMGPTTFRENGAWWGGAIYTDDGY-----PASVTTFPDDTVFEDNSADAYCPDVHNGDDNNCPVV 172
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BLAST of mRNA_Ecto-sp13_S_contig154.4042.1 vs. uniprot
Match: D7FL58_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL58_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 6.720e-11
Identity = 42/83 (50.60%), Postives = 47/83 (56.63%), Query Frame = 1 
Query:   64 SGDGGVGGAIFNGNGERVTLMGSTTFTDNSAYRGGAIYTDNGFLEDGDPLSITTFPDDTVFEGNRADNCPDVSNGDDDNCPEV 312
            SGDGG GGAIFN                   + GGAIYT++    DG P S+TTFPDD      RA+ CPDV NGDDDNCP V
Sbjct:  184 SGDGGFGGAIFNTKXXXXXXXXXXXXXXXXXHWGGAIYTNDA---DG-PGSVTTFPDDXXXXXXRAEYCPDVHNGDDDNCPVV 262
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig154.4042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LJ44_ECTSI2.100e-3170.11Asn/thr-rich large protein family protein n=1 Tax=... [more]
D7FLJ6_ECTSI8.430e-3067.82Asn/thr-rich large protein family protein n=1 Tax=... [more]
D7FQG1_ECTSI4.060e-2467.07Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7FL58_ECTSI6.720e-1150.60Asn/thr-rich large protein family protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig154contigEcto-sp13_S_contig154:15313..18520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size445
Hectar predicted targeting categoryother localisation
Exons3
Cds size192
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462818.3924017-UTR-Ecto-sp13_S_contig154:15312..154311681462818.3924017-UTR-Ecto-sp13_S_contig154:15312..15431Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig154 15313..15431 +
1681462818.4027016-UTR-Ecto-sp13_S_contig154:16740..167441681462818.4027016-UTR-Ecto-sp13_S_contig154:16740..16744Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig154 16741..16744 +
1681462818.4331892-UTR-Ecto-sp13_S_contig154:18390..185201681462818.4331892-UTR-Ecto-sp13_S_contig154:18390..18520Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig154 18391..18520 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462818.4113455-CDS-Ecto-sp13_S_contig154:16744..168851681462818.4113455-CDS-Ecto-sp13_S_contig154:16744..16885Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig154 16745..16885 +
1681462818.420026-CDS-Ecto-sp13_S_contig154:18339..183901681462818.420026-CDS-Ecto-sp13_S_contig154:18339..18390Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig154 18340..18390 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig154.4042.1prot_Ecto-sp13_S_contig154.4042.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig154 16745..18390 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig154.4042.1

>prot_Ecto-sp13_S_contig154.4042.1 ID=prot_Ecto-sp13_S_contig154.4042.1|Name=mRNA_Ecto-sp13_S_contig154.4042.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=64bp
MGSTTFTDNSAYRGGAIYTDNGFLEDGDPLSITTFPDDTVFEGNRADNCP
DVSNGDDDNCPEV*
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mRNA from alignment at Ecto-sp13_S_contig154:15313..18520+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig154.4042.1 ID=mRNA_Ecto-sp13_S_contig154.4042.1|Name=mRNA_Ecto-sp13_S_contig154.4042.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3208bp|location=Sequence derived from alignment at Ecto-sp13_S_contig154:15313..18520+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGATGGTGGTGTCGTGAACTTTAACGCTGGCAGCCTCTTCGAGGCGAAC
GGGGCCTCCGGGCTCGGGCGACGGCGGTGTGGGTGGAGCCATATTCAATG
GGAACGGCGAGAGGGTGACGTAAGTACCAACCACGTTTGGCAGAGATCAC
TCGGACATTCTACGATTCAGATCGGCTTCTGAACCATCATATCTATTTGC
ACCATTACATCTCCCTCTATGTTCCTGACAGACAGTCGGTCGTGGCGCCG
TTGGGGCGACAAATGTCTTCGACCCTCACACATCTGAACCCCCCCTTATA
TCGGTATAAGAGGGTAACCCTCTTCTATCGGAGTACTCTTTATTCGTAGG
ATACTCTTTTGAGAAACAAAGGCACTCATGACTCATTGTTTACATGTGTC
GTGGACTGAAAGCACGTGTGGTGGACTGATTGATCGAGTTGTCATGCATG
CCCAAAGCAAGCCAGGCGAACGTGATCGTATCCGCCATCTATCAGTTTCG
TGTATCTATAGTTCGTTGATGGATGATCTCCACATCATAGCTGCCATGCA
GCCATTGATTGATACGCGGCAAAGTACTGTACATGCACTTGAATATTGCA
TACAGAGAGAGTCGAAACAACATGATACAAAGCCTTTATCACCTCCCCGA
CCATGAGAGAAATCAGGTACACGGGCTACAACTAACTGTCGTATTTCGCA
ACACGAAAAGTCTACCTCCGCCTGGCTGCGGTTTCGTAGGGTCTTGCAAA
CACACGCATTGCCTATGTTAAAATGAAATCCTTCACGTCTGCATCTGCCG
TGCTGGTACAGAAACGTACGACTGTGGTAGGCTGTGAAAGGAACAGCATC
CTAGCCTTGCGCAAGAAGCTACCTTGACGCCGCGATGTGTGTGTTTGTGC
GTTTTTCTTCTACTAACAACGACCGCGCTTGCGGCTCATCAATGAAAACA
CTTCAGTCTCGGTGCGGTTGAAAACAGGAAATGCTTTCCAACGCCATGAT
TTGGGATTCTGTGCGGCGGGGGCTAATAAAGCTTCTCTCCGGAAAACCGT
CGCATCAGAAGAAGAAAACTGCACGTGTTTACCAAGGCTGCGACTTGCGC
GCCCATGTTTCAGAGTGCGTTGTTCATTGTCCTCATTCTGCTAGAGCTTC
ACGTCGTTTCAAAGCTTCCGAACGCCGTTGTTGCGAGTGTATTCTGCCGG
CTCAGCTGGCAACAGGAGGAAATTTTGCGTGGATGTATGCTATATCAGAT
CTCTAATACGAAGAAAATAGTGATGTACATGTATAATTGACCCAGTTAAA
CCCGGTCCCACTTTGTGTGCCATTGTTCATGCTGTGCTGTGCCCTCTCGC
TGCTTGTTTCTTTCATCTCTCTCTCTCTCTCTCTCTCCCCCCTCTCTCTC
TCCTTCTGCGGTGTGTGGGTTTTCCAAGGCTCATGGGCTCAACAACTTTC
ACTGACAACTCGGCGTACCGAGGTGGAGCAATTTACACCGACAATGGCTT
CTTGGAGGACGGCGATCCCCTATCGATTACCACATTCCCCGATGACACCG
TGTTCGAAGGCAATAGAGCGGATGTGAGTGTTTTGATGTCCCAAACCTCG
TGGTTGACACCGAACCTGAAACCCACCAATAGAAGATGAGCAGTTCTGGA
TACATGGAGGCGCTGTTTTGTATAATGGATACTATCTCGACCTACGGGAG
ACTGGATGCCTCACTCATGAGTATTGTGCGATGGCCCCTCGAGCCATGAA
TGATCGTCTGAATCGTGTATTCCCACCCAATTCTTGGAACGACCACCGCA
CTCTCCCTCGAATACCGACTTGGCCCTGGTGCCGTTACATGGAGCATCGT
CTTGGGTGATGGATATTTCACGATAGGATGCTCATGTGCCGTTGAAGCGC
AGGACTCGAGCCTGAGAGAAGGTGGATGGCAATGGTTGAAAGCACCACCT
GTCTGTCTCCCTAACTAATCGGCTGGTTCGTCGCAAGAGTGCAGAAGTAG
TAGCAACAGTTTCGTCCATCAGAGGGGAATGTGAAGCGATGCCTCTTAAA
ACGTTTGGGGTCTGTGCTTTCTCGAGAAAATCCTGGGGGTGACGCGCGAA
AGCATTTCGGTCGAGAAAACAGGATCACGGATCCGGCCTCGACGATAATC
TTAGCAATGTACTACTCTGAACCCAAGCGATGGAAATGACATTGCTTTTT
GCGGTAAGGCTCGCTTTTGTCGAGAGGCGCGGATGGCAGGTTGAGGACGG
ACGCCACAGCAACTGAAGTAGTGTATCGATTGTTGTGTGGACGCATCGGT
TGTTCTTTCGATTCATGCATGTAGATCAGGTTCTTCTGGGGCGGTAGGAA
CCCAATGGGGATGCAGGACCATCCCCATGCGCTGCAATCCTGTTGTACTA
CACCATTTCGTCGTTGGTCTTCGAGGAGGATCTCGACGTGGCACGGTCAG
CTATCGAAGTTTGCCCTCTGCAGCTATTTAGGCCAAGGATGGTGAAGCAC
GCAATTTCTTCCACCCACAAGCAGCCTATCTATTTGCTCATCTTTGGCAG
GAACTTGCCTGGTGACGACAAATGTCGTCATGCGATGCGAGAGCGAATAT
GAAACGAGGCTTGTGCGCCAACCTTTTGCATCTTGGCCAATGCTTCGTCG
TTGCTCCGAAGGAAAACCTCGATGCAATACACCGAACCAAAAAGATAACG
AGCGAAATAGATTATGTTCAGATATAATAGTTGGATTTGCTCCTCGAACC
ACTTGGCGCGCTCTGGGTATGGTGTAGGGAGGTGCGTAGGTGATAGTAGG
TGTGGCGATGCGACTCCATGTAGCGTACACGATTTGCCTCAGTTGCAATC
AGTTAGTGCGACACACAGAGGCATGCTCCTGGACACAACGACATGAAGGT
TTGTGATGAACCCACGCCTCTGACGAAAATAGTTCCGGTGTATCCAAGTT
GTGTCAACCGATCCTCGTGTGTCAGTCTCACATCAACTCCCCCCCCTCTG
TTGGACCCCTGCTGTACGTTGAACCAGAACTGCCCGGACGTGAGTAACGG
CGACGACGATAACTGTCCCGAAGTGTGAACGCGTCCATCAGCCACCCATT
GGGGAACATCTGCAAAATGGAGGAGTCGAGCTGTAGCCATAAAACAGTGA
GAGTCTTGGAAGGAAACCGAACCAATCGGAGTGCGTCGTGCAGCCTCGAA
GATATGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig154:15313..18520+

>mRNA_Ecto-sp13_S_contig154.4042.1 ID=mRNA_Ecto-sp13_S_contig154.4042.1|Name=mRNA_Ecto-sp13_S_contig154.4042.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig154:15313..18520+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCTCAACAACTTTCACTGACAACTCGGCGTACCGAGGTGGAGCAAT
TTACACCGACAATGGCTTCTTGGAGGACGGCGATCCCCTATCGATTACCA
CATTCCCCGATGACACCGTGTTCGAAGGCAATAGAGCGGATAACTGCCCG
GACGTGAGTAACGGCGACGACGATAACTGTCCCGAAGTGTGA
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