mRNA_Ecto-sp13_S_contig15371.4031.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15371.4031.1
Unique NamemRNA_Ecto-sp13_S_contig15371.4031.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15371.4031.1 vs. uniprot
Match: A0A6H5JFR3_9PHAE (1,3-beta-glucan synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFR3_9PHAE)

HSP 1 Score: 446 bits (1146), Expect = 1.090e-140
Identity = 236/258 (91.47%), Postives = 240/258 (93.02%), Query Frame = 1
Query:    1 QVFFMTAGGVSKASKGINLSEDIFAGYNGTIRGGQIFFKEYVQVGKGRDVGMQQIYKFEAKLSQGAAEQTLSRDVNRLGDRLDFFRLLSFYFGGLGYYVGNFITVLTVTFVVYFVLALAVFDEESIGDRKLIPEGNLQVRETVWCEGRG-------WQRGVMMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFEV 753
            +VFFMTAGGVSKAS+GINLSEDIFAGYNGTIRGGQIFFKEYVQVGKGRDVGMQQIYKFEAKLSQGAAEQTLSRDVNRLGDRLDFFRLLSFYFGGLGYYVGNFITVLTVTFVVYFVLALAVFDEESIGDRKLIPEGNLQVR        G        Q  +MMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFE+
Sbjct: 1577 KVFFMTAGGVSKASRGINLSEDIFAGYNGTIRGGQIFFKEYVQVGKGRDVGMQQIYKFEAKLSQGAAEQTLSRDVNRLGDRLDFFRLLSFYFGGLGYYVGNFITVLTVTFVVYFVLALAVFDEESIGDRKLIPEGNLQVRRLSTSAAPGALSMKYMHQLALMMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFEL 1834          
BLAST of mRNA_Ecto-sp13_S_contig15371.4031.1 vs. uniprot
Match: A0A835Z4B5_9STRA (1,3-beta-glucan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4B5_9STRA)

HSP 1 Score: 375 bits (962), Expect = 5.730e-116
Identity = 196/251 (78.09%), Postives = 215/251 (85.66%), Query Frame = 1
Query:    1 QVFFMTAGGVSKASKGINLSEDIFAGYNGTIRGGQIFFKEYVQVGKGRDVGMQQIYKFEAKLSQGAAEQTLSRDVNRLGDRLDFFRLLSFYFGGLGYYVGNFITVLTVTFVVYFVLALAVFDEESIGDRKLIPEGNLQVRETVWCEGRGWQRGVMMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFEV 753
            +VFFMT GG+SKASKGINLSEDIFAGYN TIRGGQ+ F EY QVGKGRDVGMQQIYKFEAKL+QGAAEQ+LSRDVNRLG RLDFFRL+SFYFGGLGYY+GNFIT++T+ FVVYF+LAL+VF  E IG+RK+ PEG LQ                M+LAGMG+LNT+PMLATL VEKGL  AL  V QVF+SGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHS FDDLYRFFA SHFYLGFE+
Sbjct: 1287 KVFFMTRGGMSKASKGINLSEDIFAGYNNTIRGGQVVFCEYAQVGKGRDVGMQQIYKFEAKLAQGAAEQSLSRDVNRLGARLDFFRLVSFYFGGLGYYIGNFITIVTIVFVVYFMLALSVFQAEKIGERKITPEGTLQ----------------MLLAGMGVLNTLPMLATLMVEKGLRAALITVGQVFVSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSSFDDLYRFFATSHFYLGFEL 1521          
BLAST of mRNA_Ecto-sp13_S_contig15371.4031.1 vs. uniprot
Match: A0A7S0GHQ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GHQ8_9STRA)

HSP 1 Score: 304 bits (779), Expect = 1.930e-98
Identity = 159/253 (62.85%), Postives = 195/253 (77.08%), Query Frame = 1
Query:    1 QVFFMTAGGVSKASKGINLSEDIFAGYNGTIRGGQIFFKEYVQVGKGRDVGMQQIYKFEAKLSQGAAEQTLSRDVNRLGDRLDFFRLLSFYFGGLGYYVGNFITVLTVTFVVYFVLALAVFDEESIGDRKLIPEGNLQVRETVWCEGRGWQRGVMMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFEVCM 759
            ++FFMT GGVSKASKGINLSEDIFAGY+  IRGGQ+ FKEY+QVGKGRDVGM QIYKFEAKLSQGAAEQ+LSRDV R+  RLDF RL +FYFGG+G+Y  N +TVLTV  V Y V  LA++D E IGD+K+ P G LQ                M+L G+GLL T+P++ATL VE+G L A+ ++  VF++GGP++FMFHIQT+AHY  QT+L GGA+YR TGRGFVT H+  D+ +RFFA+SH YLGFE+ M
Sbjct:   79 KLFFMTRGGVSKASKGINLSEDIFAGYSNVIRGGQVGFKEYLQVGKGRDVGMSQIYKFEAKLSQGAAEQSLSRDVYRMSHRLDFCRLFTFYFGGIGHYFSNVLTVLTVYVVTYLVALLAIYDIEVIGDQKVTPVGTLQ----------------MLLGGLGLLQTIPLIATLGVERGWLAAVQDIFSVFVTGGPLHFMFHIQTKAHYMAQTILVGGAKYRPTGRGFVTQHTPMDEQFRFFASSHLYLGFELAM 315          
BLAST of mRNA_Ecto-sp13_S_contig15371.4031.1 vs. uniprot
Match: A0A7S2UV62_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV62_9STRA)

HSP 1 Score: 319 bits (818), Expect = 1.460e-96
Identity = 168/251 (66.93%), Postives = 201/251 (80.08%), Query Frame = 1
Query:    1 QVFFMTAGGVSKASKGINLSEDIFAGYNGTIRGGQIFFKEYVQVGKGRDVGMQQIYKFEAKLSQGAAEQTLSRDVNRLGDRLDFFRLLSFYFGGLGYYVGNFITVLTVTFVVYFVLALAVFDEESIGDRKLIPEGNLQVRETVWCEGRGWQRGVMMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFEV 753
            ++FFMT GG+SKASKGINLSEDIFAG+N  +RGG + FKEYVQVGKGRDVGMQQIYKFEAKL+QG AEQ+LSRDV+RL  R+DF RLLS YFGGLG+Y+ +F+TV TV FVVY +  LA+F  E+IGDRK+IPEG +Q                M L GMG+L T+PM +TL VEKG+  A+G VLQVF SGGP+YFMFHIQT+++YF QTLLAG A+YR TGRGFVT HS FD+ +RFFA+SHFYLGFE+
Sbjct: 1064 KLFFMTRGGISKASKGINLSEDIFAGFNNQLRGGNVEFKEYVQVGKGRDVGMQQIYKFEAKLAQGNAEQSLSRDVHRLAARVDFGRLLSLYFGGLGFYINSFLTVFTVFFVVYLMTYLALFGLEAIGDRKVIPEGVVQ----------------MCLGGMGILQTVPMFSTLAVEKGVASAVGTVLQVFFSGGPLYFMFHIQTKSYYFIQTLLAGNAKYRPTGRGFVTRHSSFDENFRFFASSHFYLGFEL 1298          
BLAST of mRNA_Ecto-sp13_S_contig15371.4031.1 vs. uniprot
Match: A0A7S3LH45_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LH45_9STRA)

HSP 1 Score: 295 bits (755), Expect = 1.110e-95
Identity = 155/251 (61.75%), Postives = 191/251 (76.10%), Query Frame = 1
Query:    1 QVFFMTAGGVSKASKGINLSEDIFAGYNGTIRGGQIFFKEYVQVGKGRDVGMQQIYKFEAKLSQGAAEQTLSRDVNRLGDRLDFFRLLSFYFGGLGYYVGNFITVLTVTFVVYFVLALAVFDEESIGDRKLIPEGNLQVRETVWCEGRGWQRGVMMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFEV 753
            ++FF+T GG+SKASKGINLSEDIFAGYN   RGG + FKEYVQ+GKGRDVGM QIYKFEAKLSQGAAEQ+LSRDV R+ +RLDFFRLLSFY+GG+G+Y  N +T+LTV  VVY +  LAVF+ E IGDR + P G +Q                M+L G+GLL T+P+ ATL VE+G   +L E++ +F++GGP++FMFHIQT+A Y  QT+L GGA YR TGRGFVT H+ FD+ YRFFA SH YLG E+
Sbjct:   60 KLFFITRGGISKASKGINLSEDIFAGYNNVNRGGTVGFKEYVQIGKGRDVGMSQIYKFEAKLSQGAAEQSLSRDVYRMCNRLDFFRLLSFYYGGIGHYFSNVLTILTVYVVVYLMTVLAVFNLEKIGDRMITPMGTIQ----------------MLLGGLGLLQTIPLFATLGVERGWWASLQEIIVIFVTGGPLHFMFHIQTKATYMAQTILVGGAIYRPTGRGFVTQHAPFDEQYRFFAGSHLYLGVEL 294          
BLAST of mRNA_Ecto-sp13_S_contig15371.4031.1 vs. uniprot
Match: A0A835Z1S2_9STRA (1,3-beta-glucan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1S2_9STRA)

HSP 1 Score: 312 bits (799), Expect = 6.940e-94
Identity = 165/217 (76.04%), Postives = 180/217 (82.95%), Query Frame = 1
Query:  103 QIFFKEYVQVGKGRDVGMQQIYKFEAKLSQGAAEQTLSRDVNRLGDRLDFFRLLSFYFGGLGYYVGNFITVLTVTFVVYFVLALAVFDEESIGDRKLIPEGNLQVRETVWCEGRGWQRGVMMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFEV 753
            ++ F+EY QVGKGRDVGMQQIYKFEAKL+QGAAEQ+LSRD NRLG RLDFFRL SFYFGGLGYY+GNFITV+T+ FVVYF+LA AVF  E IG+RK+ P G LQ                MMLAGMG+LNT+PMLATL VEKGL  AL  V QVF+SGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHS FDDLYRFFA SHFYLGFE+
Sbjct: 1720 KVVFREYAQVGKGRDVGMQQIYKFEAKLAQGAAEQSLSRDTNRLGARLDFFRLWSFYFGGLGYYIGNFITVVTIVFVVYFMLAEAVFQVEKIGERKITPVGTLQ----------------MMLAGMGVLNTLPMLATLMVEKGLRAALVVVGQVFVSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSTFDDLYRFFATSHFYLGFEL 1920          
BLAST of mRNA_Ecto-sp13_S_contig15371.4031.1 vs. uniprot
Match: A0A7S2QVX6_9STRA (1,3-beta-glucan synthase (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QVX6_9STRA)

HSP 1 Score: 305 bits (782), Expect = 1.320e-91
Identity = 161/251 (64.14%), Postives = 194/251 (77.29%), Query Frame = 1
Query:    1 QVFFMTAGGVSKASKGINLSEDIFAGYNGTIRGGQIFFKEYVQVGKGRDVGMQQIYKFEAKLSQGAAEQTLSRDVNRLGDRLDFFRLLSFYFGGLGYYVGNFITVLTVTFVVYFVLALAVFDEESIGDRKLIPEGNLQVRETVWCEGRGWQRGVMMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFEV 753
            ++FFMT GGVSKASKGINLSEDIFAGYN  +RGG + FKEYVQ GKGRDVG QQIYKFEAKLSQG AEQ+LSRDV R+  R+DFFRLLS YFGG+G+Y GN +TV TV  V Y +L LA++D E IGDRK+ P G LQ                M+L GMGL+NT+P+ ATL VE+G   ++ E+ QVF++GGP++FMFHIQT+AHYF QT+L GGA+YRATGRGFVT HS F + +RFFA+SH YLG E+
Sbjct: 1510 KLFFMTRGGVSKASKGINLSEDIFAGYNNLVRGGGVDFKEYVQCGKGRDVGGQQIYKFEAKLSQGNAEQSLSRDVYRVAQRVDFFRLLSTYFGGIGHYCGNVLTVFTVYLVCYLMLGLALYDCEKIGDRKITPSGTLQ----------------MLLGGMGLMNTIPLFATLGVERGWWASMMEIFQVFVTGGPLHFMFHIQTKAHYFAQTILVGGAKYRATGRGFVTQHSPFAENFRFFASSHLYLGVEL 1744          
BLAST of mRNA_Ecto-sp13_S_contig15371.4031.1 vs. uniprot
Match: B8CDT6_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CDT6_THAPS)

HSP 1 Score: 290 bits (742), Expect = 2.790e-90
Identity = 152/251 (60.56%), Postives = 191/251 (76.10%), Query Frame = 1
Query:    1 QVFFMTAGGVSKASKGINLSEDIFAGYNGTIRGGQIFFKEYVQVGKGRDVGMQQIYKFEAKLSQGAAEQTLSRDVNRLGDRLDFFRLLSFYFGGLGYYVGNFITVLTVTFVVYFVLALAVFDEESIGDRKLIPEGNLQVRETVWCEGRGWQRGVMMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFEV 753
            ++FF+T GG+SK+SKGINLSEDIFAGYN  IRGGQ+ FKEY+QVGKGRDVGM QIY+FEAKLSQGA EQ+LSRDV RL  RLDF RLLS+YFGG+G+Y  N +TV+TV  VVY +  LA++D E IGDR + P G +Q                M+L G+GLL T+P+ +TL VE+G   +  E++QVF +GGP++FMFHIQT+A+Y  QT+L GGA+YR TGRGFVT H+  D+ YRFFA+SH YLG E+
Sbjct:  330 KLFFITRGGISKSSKGINLSEDIFAGYNNAIRGGQVAFKEYIQVGKGRDVGMSQIYQFEAKLSQGAGEQSLSRDVYRLCHRLDFSRLLSYYFGGIGHYFSNVLTVITVYVVVYLMAILALYDLEKIGDRLITPMGTIQ----------------MLLGGLGLLQTVPLFSTLGVERGWWESFRELVQVFATGGPLHFMFHIQTKANYMTQTILVGGAKYRPTGRGFVTQHTPMDEQYRFFASSHLYLGVEM 564          
BLAST of mRNA_Ecto-sp13_S_contig15371.4031.1 vs. uniprot
Match: F0YA81_AURAN (1,3-beta-glucan synthase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YA81_AURAN)

HSP 1 Score: 301 bits (770), Expect = 5.450e-90
Identity = 159/251 (63.35%), Postives = 192/251 (76.49%), Query Frame = 1
Query:    1 QVFFMTAGGVSKASKGINLSEDIFAGYNGTIRGGQIFFKEYVQVGKGRDVGMQQIYKFEAKLSQGAAEQTLSRDVNRLGDRLDFFRLLSFYFGGLGYYVGNFITVLTVTFVVYFVLALAVFDEESIGDRKLIPEGNLQVRETVWCEGRGWQRGVMMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFEV 753
            +++F T GGVSKASKGINLSEDIFAGY   IRGG +  KEY QVGKGRDVGMQQIYKFEAKLSQG AEQ LSRDV+R+  RLDF RLLS+YFGG+G+Y+ + +T++T+    Y  L LAV+  ESIG R ++P G++Q+                +LAG+GLLNT+P+LATL VE+GL  A  +V QVF SGGP+YF+FHIQTRAHYF QT+LAGGA YRATGRGFVT HS FD+ YRFFA SH +LG E+
Sbjct: 1762 KLWFATRGGVSKASKGINLSEDIFAGYTAMIRGGGVTMKEYAQVGKGRDVGMQQIYKFEAKLSQGNAEQCLSRDVSRIASRLDFPRLLSYYFGGIGHYINSALTIITIQVATYLALLLAVYGAESIGHRLVVPLGSVQI----------------LLAGLGLLNTLPLLATLAVERGLWAAAKDVAQVFASGGPLYFIFHIQTRAHYFTQTILAGGATYRATGRGFVTRHSTFDEQYRFFAASHLHLGVEL 1996          
BLAST of mRNA_Ecto-sp13_S_contig15371.4031.1 vs. uniprot
Match: A0A7S3H8Z7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H8Z7_9STRA)

HSP 1 Score: 295 bits (756), Expect = 6.550e-90
Identity = 152/251 (60.56%), Postives = 196/251 (78.09%), Query Frame = 1
Query:    1 QVFFMTAGGVSKASKGINLSEDIFAGYNGTIRGGQIFFKEYVQVGKGRDVGMQQIYKFEAKLSQGAAEQTLSRDVNRLGDRLDFFRLLSFYFGGLGYYVGNFITVLTVTFVVYFVLALAVFDEESIGDRKLIPEGNLQVRETVWCEGRGWQRGVMMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFEV 753
            ++F MT GG+SKAS+GINLSED+FAG+N TIRG  + FKEYVQVGKGRDVG+QQ YKFEAKL+QG AEQ+LSRD+NR+  RLDFFRL SFY+GG+G+Y+ N + + T+  VVY +LALA+F EE +  R + PEG LQ                ++L+GMG+L TMP+L TLTVEKG+L A+ E+  + LSGGP+YF+FHI+T+++YF QTL+AGGA+YR TGR FVT HS FD+ +RFFA+SH YLGFE+
Sbjct:  124 KLFVMTEGGMSKASRGINLSEDVFAGFNATIRGHSVGFKEYVQVGKGRDVGLQQTYKFEAKLAQGNAEQSLSRDMNRICGRLDFFRLFSFYYGGIGHYMANTMVMFTLVVVVYTMLALAIFKEEGVNGRAMHPEGVLQ----------------LLLSGMGILQTMPLLITLTVEKGVLAAISEIGFMILSGGPLYFIFHIETKSYYFSQTLMAGGAKYRPTGRAFVTSHSSFDENFRFFASSHIYLGFEI 358          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15371.4031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFR3_9PHAE1.090e-14091.471,3-beta-glucan synthase n=1 Tax=Ectocarpus sp. CC... [more]
A0A835Z4B5_9STRA5.730e-11678.091,3-beta-glucan synthase n=1 Tax=Tribonema minus T... [more]
A0A7S0GHQ8_9STRA1.930e-9862.85Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S2UV62_9STRA1.460e-9666.93Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3LH45_9STRA1.110e-9561.75Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A835Z1S2_9STRA6.940e-9476.041,3-beta-glucan synthase n=1 Tax=Tribonema minus T... [more]
A0A7S2QVX6_9STRA1.320e-9164.141,3-beta-glucan synthase (Fragment) n=1 Tax=Tripar... [more]
B8CDT6_THAPS2.790e-9060.56Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
F0YA81_AURAN5.450e-9063.351,3-beta-glucan synthase n=1 Tax=Aureococcus anoph... [more]
A0A7S3H8Z7_9STRA6.550e-9060.56Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15371contigEcto-sp13_S_contig15371:654..2427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score299.3
Seed ortholog evalue1.7e-78
Seed eggNOG ortholog44056.XP_009037407.1
Model size774
KEGG koko:K11000
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.1,3-beta-D-glucan synthase activity
EggNOG OGsKOG0916@1,KOG0916@2759
Cds size762
COG Functional cat.S
CAZyGT48
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01003
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462817.6410918-UTR-Ecto-sp13_S_contig15371:653..6651681462817.6410918-UTR-Ecto-sp13_S_contig15371:653..665Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15371 654..665 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462817.6508996-CDS-Ecto-sp13_S_contig15371:665..7581681462817.6508996-CDS-Ecto-sp13_S_contig15371:665..758Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15371 666..758 +
1681462817.6590207-CDS-Ecto-sp13_S_contig15371:1171..15281681462817.6590207-CDS-Ecto-sp13_S_contig15371:1171..1528Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15371 1172..1528 +
1681462817.6757815-CDS-Ecto-sp13_S_contig15371:2115..24271681462817.6757815-CDS-Ecto-sp13_S_contig15371:2115..2427Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15371 2116..2427 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15371.4031.1prot_Ecto-sp13_S_contig15371.4031.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15371 666..2427 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15371.4031.1

>prot_Ecto-sp13_S_contig15371.4031.1 ID=prot_Ecto-sp13_S_contig15371.4031.1|Name=mRNA_Ecto-sp13_S_contig15371.4031.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=254bp
MTAGGVSKASKGINLSEDIFAGYNGTIRGGQIFFKEYVQVGKGRDVGMQQ
IYKFEAKLSQGAAEQTLSRDVNRLGDRLDFFRLLSFYFGGLGYYVGNFIT
VLTVTFVVYFVLALAVFDEESIGDRKLIPEGNLQVRETVWCEGRGWQRGV
MMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTR
AHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFEVCMY
MYY*
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mRNA from alignment at Ecto-sp13_S_contig15371:654..2427+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15371.4031.1 ID=mRNA_Ecto-sp13_S_contig15371.4031.1|Name=mRNA_Ecto-sp13_S_contig15371.4031.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1774bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15371:654..2427+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGTTCTTCATGACGGCAGGCGGTGTGAGCAAGGCGTCCAAGGGCAT CAACCTGTCTGAGGACATCTTCGCCGGGTACAACGGCACCATTCGGGGAG GGCAGGTGCGTGCTTGTTGCTTGGATGGCTGCTCACAGAGTTCACACACC TTTTTTCTCTCTTGGATTTATGCTTTGTTGATATACTTCATCAATGTTTT TTCAGCAACTCTTGTTTTTTTTGCGCAATATATGTATGATTTATGTTTTT TTTCGATATGGGGGAGGGTCGCAAGCCGTGCCCCCTCCCCGCCTTGGACG TAGCGGAACACATCGTGGAGGACACGTGGGTGCTTTGAAGGTGTTGATGT CGATTTTTACCCTCACTTTGGTTGTGGCCGTGACGCTCTGTTTTTTCGGA AACCCAGCTTATTTCTGAAATTCCCCTCAGTTTTCCATATCTCGGGAGCA TTCCCATGCCTCCCTCCAAGATGTACCACCCCCTTCCCCACCCCCTAATA ATAAAACTTCCTGGGCAGATCTTCTTCAAGGAGTACGTCCAGGTGGGCAA GGGCCGCGACGTGGGCATGCAGCAGATCTACAAGTTCGAGGCCAAGCTGT CCCAGGGCGCCGCGGAGCAGACCCTGTCCCGCGACGTGAACCGCCTCGGC GACCGCCTCGACTTCTTCCGCCTCCTGTCGTTCTACTTCGGCGGCCTCGG CTACTACGTGGGCAACTTCATCACGGTGCTGACGGTTACCTTCGTGGTGT ACTTCGTTCTCGCCCTGGCCGTGTTCGACGAGGAGTCCATCGGGGACCGC AAGCTTATCCCGGAGGGAAACCTGCAGGTGCGTGAGACCGTTTGGTGTGA GGGGAGGGGGTGGCAGCGTGGAGTTGTTGGGGCGGGTGGGTGGGGGTGGC GCTTTGTGTTGTTTTTTTGGGGGGGGCGTGCTTTTTGGGAGGCGAGGAGG AGGCTCTTGTGTTTGCTCTTGAGGCTTGGGCTTTGATTGGACCCGAGGTT GTTTTTATTAATTTCGCTCGTACCGTACCGCTTCAGCGCCGGTGTCCCAT GGTATCGGTTTTGGTGGGGTTGGAGGCTTAGCGCAAGAGGTCTTCTGTTG TCAGGTACATATGTGCGGCAGGATGTTGTGGCGCTTTTCGTCGTGAGTGT TGTTTGAAAGTGTGATGGTCGTTTCGATGTTGCTGCTTTTGAGCATTTAC TGCCGTGGCCGGAAGGAACGTAGGCAGCGGCACCGGCGGTGGCTGTAAGC GCGGTACCTTGGTTGTGTTACGCTCGTATACACATGTTGCCACTCTCTTT GTTAACGTGGCAGCAGGTCCGTCGGCTGTCCACAGCTGCTGCCCCTGGCT CTATATCCATGAAGTACACACACCAAGTTGTGTTGGCAAGTGTCGTATCA GGACATCCCTACCTGTTAACGTACACAAACGACTCGTCCCACTCCAACTC CTCCAACACCAGATGATGCTCGCGGGCATGGGCCTGCTCAACACGATGCC CATGCTGGCCACGCTCACGGTCGAGAAGGGTCTCCTCGTCGCTCTCGGAG AGGTCCTGCAGGTCTTCCTGAGCGGCGGACCCATGTACTTCATGTTCCAC ATCCAGACGCGGGCGCACTACTTCTACCAGACGCTACTGGCGGGCGGGGC GCAGTACCGGGCCACGGGGAGGGGATTCGTGACCCACCACTCGTGCTTCG ACGACCTCTACCGGTTCTTCGCCAACTCGCACTTCTACCTCGGATTCGAG GTATGCATGTATATGTACTATTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15371:654..2427+

>mRNA_Ecto-sp13_S_contig15371.4031.1 ID=mRNA_Ecto-sp13_S_contig15371.4031.1|Name=mRNA_Ecto-sp13_S_contig15371.4031.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=762bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15371:654..2427+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGGCAGGCGGTGTGAGCAAGGCGTCCAAGGGCATCAACCTGTCTGA
GGACATCTTCGCCGGGTACAACGGCACCATTCGGGGAGGGCAGATCTTCT
TCAAGGAGTACGTCCAGGTGGGCAAGGGCCGCGACGTGGGCATGCAGCAG
ATCTACAAGTTCGAGGCCAAGCTGTCCCAGGGCGCCGCGGAGCAGACCCT
GTCCCGCGACGTGAACCGCCTCGGCGACCGCCTCGACTTCTTCCGCCTCC
TGTCGTTCTACTTCGGCGGCCTCGGCTACTACGTGGGCAACTTCATCACG
GTGCTGACGGTTACCTTCGTGGTGTACTTCGTTCTCGCCCTGGCCGTGTT
CGACGAGGAGTCCATCGGGGACCGCAAGCTTATCCCGGAGGGAAACCTGC
AGGTGCGTGAGACCGTTTGGTGTGAGGGGAGGGGGTGGCAGCGTGGAGTT
ATGATGCTCGCGGGCATGGGCCTGCTCAACACGATGCCCATGCTGGCCAC
GCTCACGGTCGAGAAGGGTCTCCTCGTCGCTCTCGGAGAGGTCCTGCAGG
TCTTCCTGAGCGGCGGACCCATGTACTTCATGTTCCACATCCAGACGCGG
GCGCACTACTTCTACCAGACGCTACTGGCGGGCGGGGCGCAGTACCGGGC
CACGGGGAGGGGATTCGTGACCCACCACTCGTGCTTCGACGACCTCTACC
GGTTCTTCGCCAACTCGCACTTCTACCTCGGATTCGAGGTATGCATGTAT
ATGTACTATTAG
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