mRNA_Ecto-sp13_S_contig15371.4031.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig15371.4031.1 vs. uniprot
Match: A0A6H5JFR3_9PHAE (1,3-beta-glucan synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFR3_9PHAE) HSP 1 Score: 446 bits (1146), Expect = 1.090e-140 Identity = 236/258 (91.47%), Postives = 240/258 (93.02%), Query Frame = 1
Query: 1 QVFFMTAGGVSKASKGINLSEDIFAGYNGTIRGGQIFFKEYVQVGKGRDVGMQQIYKFEAKLSQGAAEQTLSRDVNRLGDRLDFFRLLSFYFGGLGYYVGNFITVLTVTFVVYFVLALAVFDEESIGDRKLIPEGNLQVRETVWCEGRG-------WQRGVMMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFEV 753
+VFFMTAGGVSKAS+GINLSEDIFAGYNGTIRGGQIFFKEYVQVGKGRDVGMQQIYKFEAKLSQGAAEQTLSRDVNRLGDRLDFFRLLSFYFGGLGYYVGNFITVLTVTFVVYFVLALAVFDEESIGDRKLIPEGNLQVR G Q +MMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFE+
Sbjct: 1577 KVFFMTAGGVSKASRGINLSEDIFAGYNGTIRGGQIFFKEYVQVGKGRDVGMQQIYKFEAKLSQGAAEQTLSRDVNRLGDRLDFFRLLSFYFGGLGYYVGNFITVLTVTFVVYFVLALAVFDEESIGDRKLIPEGNLQVRRLSTSAAPGALSMKYMHQLALMMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFEL 1834
BLAST of mRNA_Ecto-sp13_S_contig15371.4031.1 vs. uniprot
Match: A0A835Z4B5_9STRA (1,3-beta-glucan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4B5_9STRA) HSP 1 Score: 375 bits (962), Expect = 5.730e-116 Identity = 196/251 (78.09%), Postives = 215/251 (85.66%), Query Frame = 1
Query: 1 QVFFMTAGGVSKASKGINLSEDIFAGYNGTIRGGQIFFKEYVQVGKGRDVGMQQIYKFEAKLSQGAAEQTLSRDVNRLGDRLDFFRLLSFYFGGLGYYVGNFITVLTVTFVVYFVLALAVFDEESIGDRKLIPEGNLQVRETVWCEGRGWQRGVMMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFEV 753
+VFFMT GG+SKASKGINLSEDIFAGYN TIRGGQ+ F EY QVGKGRDVGMQQIYKFEAKL+QGAAEQ+LSRDVNRLG RLDFFRL+SFYFGGLGYY+GNFIT++T+ FVVYF+LAL+VF E IG+RK+ PEG LQ M+LAGMG+LNT+PMLATL VEKGL AL V QVF+SGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHS FDDLYRFFA SHFYLGFE+
Sbjct: 1287 KVFFMTRGGMSKASKGINLSEDIFAGYNNTIRGGQVVFCEYAQVGKGRDVGMQQIYKFEAKLAQGAAEQSLSRDVNRLGARLDFFRLVSFYFGGLGYYIGNFITIVTIVFVVYFMLALSVFQAEKIGERKITPEGTLQ----------------MLLAGMGVLNTLPMLATLMVEKGLRAALITVGQVFVSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSSFDDLYRFFATSHFYLGFEL 1521
BLAST of mRNA_Ecto-sp13_S_contig15371.4031.1 vs. uniprot
Match: A0A7S0GHQ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GHQ8_9STRA) HSP 1 Score: 304 bits (779), Expect = 1.930e-98 Identity = 159/253 (62.85%), Postives = 195/253 (77.08%), Query Frame = 1
Query: 1 QVFFMTAGGVSKASKGINLSEDIFAGYNGTIRGGQIFFKEYVQVGKGRDVGMQQIYKFEAKLSQGAAEQTLSRDVNRLGDRLDFFRLLSFYFGGLGYYVGNFITVLTVTFVVYFVLALAVFDEESIGDRKLIPEGNLQVRETVWCEGRGWQRGVMMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFEVCM 759
++FFMT GGVSKASKGINLSEDIFAGY+ IRGGQ+ FKEY+QVGKGRDVGM QIYKFEAKLSQGAAEQ+LSRDV R+ RLDF RL +FYFGG+G+Y N +TVLTV V Y V LA++D E IGD+K+ P G LQ M+L G+GLL T+P++ATL VE+G L A+ ++ VF++GGP++FMFHIQT+AHY QT+L GGA+YR TGRGFVT H+ D+ +RFFA+SH YLGFE+ M
Sbjct: 79 KLFFMTRGGVSKASKGINLSEDIFAGYSNVIRGGQVGFKEYLQVGKGRDVGMSQIYKFEAKLSQGAAEQSLSRDVYRMSHRLDFCRLFTFYFGGIGHYFSNVLTVLTVYVVTYLVALLAIYDIEVIGDQKVTPVGTLQ----------------MLLGGLGLLQTIPLIATLGVERGWLAAVQDIFSVFVTGGPLHFMFHIQTKAHYMAQTILVGGAKYRPTGRGFVTQHTPMDEQFRFFASSHLYLGFELAM 315
BLAST of mRNA_Ecto-sp13_S_contig15371.4031.1 vs. uniprot
Match: A0A7S2UV62_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV62_9STRA) HSP 1 Score: 319 bits (818), Expect = 1.460e-96 Identity = 168/251 (66.93%), Postives = 201/251 (80.08%), Query Frame = 1
Query: 1 QVFFMTAGGVSKASKGINLSEDIFAGYNGTIRGGQIFFKEYVQVGKGRDVGMQQIYKFEAKLSQGAAEQTLSRDVNRLGDRLDFFRLLSFYFGGLGYYVGNFITVLTVTFVVYFVLALAVFDEESIGDRKLIPEGNLQVRETVWCEGRGWQRGVMMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFEV 753
++FFMT GG+SKASKGINLSEDIFAG+N +RGG + FKEYVQVGKGRDVGMQQIYKFEAKL+QG AEQ+LSRDV+RL R+DF RLLS YFGGLG+Y+ +F+TV TV FVVY + LA+F E+IGDRK+IPEG +Q M L GMG+L T+PM +TL VEKG+ A+G VLQVF SGGP+YFMFHIQT+++YF QTLLAG A+YR TGRGFVT HS FD+ +RFFA+SHFYLGFE+
Sbjct: 1064 KLFFMTRGGISKASKGINLSEDIFAGFNNQLRGGNVEFKEYVQVGKGRDVGMQQIYKFEAKLAQGNAEQSLSRDVHRLAARVDFGRLLSLYFGGLGFYINSFLTVFTVFFVVYLMTYLALFGLEAIGDRKVIPEGVVQ----------------MCLGGMGILQTVPMFSTLAVEKGVASAVGTVLQVFFSGGPLYFMFHIQTKSYYFIQTLLAGNAKYRPTGRGFVTRHSSFDENFRFFASSHFYLGFEL 1298
BLAST of mRNA_Ecto-sp13_S_contig15371.4031.1 vs. uniprot
Match: A0A7S3LH45_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LH45_9STRA) HSP 1 Score: 295 bits (755), Expect = 1.110e-95 Identity = 155/251 (61.75%), Postives = 191/251 (76.10%), Query Frame = 1
Query: 1 QVFFMTAGGVSKASKGINLSEDIFAGYNGTIRGGQIFFKEYVQVGKGRDVGMQQIYKFEAKLSQGAAEQTLSRDVNRLGDRLDFFRLLSFYFGGLGYYVGNFITVLTVTFVVYFVLALAVFDEESIGDRKLIPEGNLQVRETVWCEGRGWQRGVMMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFEV 753
++FF+T GG+SKASKGINLSEDIFAGYN RGG + FKEYVQ+GKGRDVGM QIYKFEAKLSQGAAEQ+LSRDV R+ +RLDFFRLLSFY+GG+G+Y N +T+LTV VVY + LAVF+ E IGDR + P G +Q M+L G+GLL T+P+ ATL VE+G +L E++ +F++GGP++FMFHIQT+A Y QT+L GGA YR TGRGFVT H+ FD+ YRFFA SH YLG E+
Sbjct: 60 KLFFITRGGISKASKGINLSEDIFAGYNNVNRGGTVGFKEYVQIGKGRDVGMSQIYKFEAKLSQGAAEQSLSRDVYRMCNRLDFFRLLSFYYGGIGHYFSNVLTILTVYVVVYLMTVLAVFNLEKIGDRMITPMGTIQ----------------MLLGGLGLLQTIPLFATLGVERGWWASLQEIIVIFVTGGPLHFMFHIQTKATYMAQTILVGGAIYRPTGRGFVTQHAPFDEQYRFFAGSHLYLGVEL 294
BLAST of mRNA_Ecto-sp13_S_contig15371.4031.1 vs. uniprot
Match: A0A835Z1S2_9STRA (1,3-beta-glucan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1S2_9STRA) HSP 1 Score: 312 bits (799), Expect = 6.940e-94 Identity = 165/217 (76.04%), Postives = 180/217 (82.95%), Query Frame = 1
Query: 103 QIFFKEYVQVGKGRDVGMQQIYKFEAKLSQGAAEQTLSRDVNRLGDRLDFFRLLSFYFGGLGYYVGNFITVLTVTFVVYFVLALAVFDEESIGDRKLIPEGNLQVRETVWCEGRGWQRGVMMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFEV 753
++ F+EY QVGKGRDVGMQQIYKFEAKL+QGAAEQ+LSRD NRLG RLDFFRL SFYFGGLGYY+GNFITV+T+ FVVYF+LA AVF E IG+RK+ P G LQ MMLAGMG+LNT+PMLATL VEKGL AL V QVF+SGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHS FDDLYRFFA SHFYLGFE+
Sbjct: 1720 KVVFREYAQVGKGRDVGMQQIYKFEAKLAQGAAEQSLSRDTNRLGARLDFFRLWSFYFGGLGYYIGNFITVVTIVFVVYFMLAEAVFQVEKIGERKITPVGTLQ----------------MMLAGMGVLNTLPMLATLMVEKGLRAALVVVGQVFVSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSTFDDLYRFFATSHFYLGFEL 1920
BLAST of mRNA_Ecto-sp13_S_contig15371.4031.1 vs. uniprot
Match: A0A7S2QVX6_9STRA (1,3-beta-glucan synthase (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QVX6_9STRA) HSP 1 Score: 305 bits (782), Expect = 1.320e-91 Identity = 161/251 (64.14%), Postives = 194/251 (77.29%), Query Frame = 1
Query: 1 QVFFMTAGGVSKASKGINLSEDIFAGYNGTIRGGQIFFKEYVQVGKGRDVGMQQIYKFEAKLSQGAAEQTLSRDVNRLGDRLDFFRLLSFYFGGLGYYVGNFITVLTVTFVVYFVLALAVFDEESIGDRKLIPEGNLQVRETVWCEGRGWQRGVMMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFEV 753
++FFMT GGVSKASKGINLSEDIFAGYN +RGG + FKEYVQ GKGRDVG QQIYKFEAKLSQG AEQ+LSRDV R+ R+DFFRLLS YFGG+G+Y GN +TV TV V Y +L LA++D E IGDRK+ P G LQ M+L GMGL+NT+P+ ATL VE+G ++ E+ QVF++GGP++FMFHIQT+AHYF QT+L GGA+YRATGRGFVT HS F + +RFFA+SH YLG E+
Sbjct: 1510 KLFFMTRGGVSKASKGINLSEDIFAGYNNLVRGGGVDFKEYVQCGKGRDVGGQQIYKFEAKLSQGNAEQSLSRDVYRVAQRVDFFRLLSTYFGGIGHYCGNVLTVFTVYLVCYLMLGLALYDCEKIGDRKITPSGTLQ----------------MLLGGMGLMNTIPLFATLGVERGWWASMMEIFQVFVTGGPLHFMFHIQTKAHYFAQTILVGGAKYRATGRGFVTQHSPFAENFRFFASSHLYLGVEL 1744
BLAST of mRNA_Ecto-sp13_S_contig15371.4031.1 vs. uniprot
Match: B8CDT6_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CDT6_THAPS) HSP 1 Score: 290 bits (742), Expect = 2.790e-90 Identity = 152/251 (60.56%), Postives = 191/251 (76.10%), Query Frame = 1
Query: 1 QVFFMTAGGVSKASKGINLSEDIFAGYNGTIRGGQIFFKEYVQVGKGRDVGMQQIYKFEAKLSQGAAEQTLSRDVNRLGDRLDFFRLLSFYFGGLGYYVGNFITVLTVTFVVYFVLALAVFDEESIGDRKLIPEGNLQVRETVWCEGRGWQRGVMMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFEV 753
++FF+T GG+SK+SKGINLSEDIFAGYN IRGGQ+ FKEY+QVGKGRDVGM QIY+FEAKLSQGA EQ+LSRDV RL RLDF RLLS+YFGG+G+Y N +TV+TV VVY + LA++D E IGDR + P G +Q M+L G+GLL T+P+ +TL VE+G + E++QVF +GGP++FMFHIQT+A+Y QT+L GGA+YR TGRGFVT H+ D+ YRFFA+SH YLG E+
Sbjct: 330 KLFFITRGGISKSSKGINLSEDIFAGYNNAIRGGQVAFKEYIQVGKGRDVGMSQIYQFEAKLSQGAGEQSLSRDVYRLCHRLDFSRLLSYYFGGIGHYFSNVLTVITVYVVVYLMAILALYDLEKIGDRLITPMGTIQ----------------MLLGGLGLLQTVPLFSTLGVERGWWESFRELVQVFATGGPLHFMFHIQTKANYMTQTILVGGAKYRPTGRGFVTQHTPMDEQYRFFASSHLYLGVEM 564
BLAST of mRNA_Ecto-sp13_S_contig15371.4031.1 vs. uniprot
Match: F0YA81_AURAN (1,3-beta-glucan synthase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YA81_AURAN) HSP 1 Score: 301 bits (770), Expect = 5.450e-90 Identity = 159/251 (63.35%), Postives = 192/251 (76.49%), Query Frame = 1
Query: 1 QVFFMTAGGVSKASKGINLSEDIFAGYNGTIRGGQIFFKEYVQVGKGRDVGMQQIYKFEAKLSQGAAEQTLSRDVNRLGDRLDFFRLLSFYFGGLGYYVGNFITVLTVTFVVYFVLALAVFDEESIGDRKLIPEGNLQVRETVWCEGRGWQRGVMMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFEV 753
+++F T GGVSKASKGINLSEDIFAGY IRGG + KEY QVGKGRDVGMQQIYKFEAKLSQG AEQ LSRDV+R+ RLDF RLLS+YFGG+G+Y+ + +T++T+ Y L LAV+ ESIG R ++P G++Q+ +LAG+GLLNT+P+LATL VE+GL A +V QVF SGGP+YF+FHIQTRAHYF QT+LAGGA YRATGRGFVT HS FD+ YRFFA SH +LG E+
Sbjct: 1762 KLWFATRGGVSKASKGINLSEDIFAGYTAMIRGGGVTMKEYAQVGKGRDVGMQQIYKFEAKLSQGNAEQCLSRDVSRIASRLDFPRLLSYYFGGIGHYINSALTIITIQVATYLALLLAVYGAESIGHRLVVPLGSVQI----------------LLAGLGLLNTLPLLATLAVERGLWAAAKDVAQVFASGGPLYFIFHIQTRAHYFTQTILAGGATYRATGRGFVTRHSTFDEQYRFFAASHLHLGVEL 1996
BLAST of mRNA_Ecto-sp13_S_contig15371.4031.1 vs. uniprot
Match: A0A7S3H8Z7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H8Z7_9STRA) HSP 1 Score: 295 bits (756), Expect = 6.550e-90 Identity = 152/251 (60.56%), Postives = 196/251 (78.09%), Query Frame = 1
Query: 1 QVFFMTAGGVSKASKGINLSEDIFAGYNGTIRGGQIFFKEYVQVGKGRDVGMQQIYKFEAKLSQGAAEQTLSRDVNRLGDRLDFFRLLSFYFGGLGYYVGNFITVLTVTFVVYFVLALAVFDEESIGDRKLIPEGNLQVRETVWCEGRGWQRGVMMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFEV 753
++F MT GG+SKAS+GINLSED+FAG+N TIRG + FKEYVQVGKGRDVG+QQ YKFEAKL+QG AEQ+LSRD+NR+ RLDFFRL SFY+GG+G+Y+ N + + T+ VVY +LALA+F EE + R + PEG LQ ++L+GMG+L TMP+L TLTVEKG+L A+ E+ + LSGGP+YF+FHI+T+++YF QTL+AGGA+YR TGR FVT HS FD+ +RFFA+SH YLGFE+
Sbjct: 124 KLFVMTEGGMSKASRGINLSEDVFAGFNATIRGHSVGFKEYVQVGKGRDVGLQQTYKFEAKLAQGNAEQSLSRDMNRICGRLDFFRLFSFYYGGIGHYMANTMVMFTLVVVVYTMLALAIFKEEGVNGRAMHPEGVLQ----------------LLLSGMGILQTMPLLITLTVEKGVLAAISEIGFMILSGGPLYFIFHIETKSYYFSQTLMAGGAKYRPTGRAFVTSHSSFDENFRFFASSHIYLGFEI 358 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15371.4031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig15371.4031.1 >prot_Ecto-sp13_S_contig15371.4031.1 ID=prot_Ecto-sp13_S_contig15371.4031.1|Name=mRNA_Ecto-sp13_S_contig15371.4031.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=254bp MTAGGVSKASKGINLSEDIFAGYNGTIRGGQIFFKEYVQVGKGRDVGMQQback to top mRNA from alignment at Ecto-sp13_S_contig15371:654..2427+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig15371.4031.1 ID=mRNA_Ecto-sp13_S_contig15371.4031.1|Name=mRNA_Ecto-sp13_S_contig15371.4031.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1774bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15371:654..2427+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15371:654..2427+ >mRNA_Ecto-sp13_S_contig15371.4031.1 ID=mRNA_Ecto-sp13_S_contig15371.4031.1|Name=mRNA_Ecto-sp13_S_contig15371.4031.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=762bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15371:654..2427+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |