mRNA_Ecto-sp13_S_contig15366.4029.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15366.4029.1
Unique NamemRNA_Ecto-sp13_S_contig15366.4029.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15366.4029.1 vs. uniprot
Match: A0A6H5K9K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K2_9PHAE)

HSP 1 Score: 254 bits (650), Expect = 1.880e-79
Identity = 131/164 (79.88%), Postives = 136/164 (82.93%), Query Frame = 2 
Query:  191 MLNEHSGQEAAVEVRDDAVENLRPGPRDVALVKKSVTAELDHFLWLQSIWGMVIDLPPTREMIMTSWTYLVELLAAGRARKLTTRTGSTFILSRFQTWPDRLRTWINHESVQEVARTRQDDQGRHYLCCIINVVDE------------ELYRVLVEEREKSNTV 646
            MLN HSGQEAAVEVRDDAVENLR GPRDVA VKK VTA LDHF WLQSIWGM ID+PPTREMIMTSW YLV+LLAAGRARK TTRT STF LSRF+ WPDR+RTWINHESVQEVARTRQ DQG HYL CIINVVDE            ELYRV +EEREKSNTV
Sbjct:    1 MLNAHSGQEAAVEVRDDAVENLRAGPRDVAQVKKGVTAALDHFPWLQSIWGMGIDIPPTREMIMTSWKYLVDLLAAGRARKPTTRTASTFTLSRFEAWPDRIRTWINHESVQEVARTRQGDQGTHYLRCIINVVDECYGEGVKPISGQELYRVFMEEREKSNTV 164
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BLAST of mRNA_Ecto-sp13_S_contig15366.4029.1 vs. uniprot
Match: A0A6H5K0V2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V2_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.370e-20
Identity = 57/162 (35.19%), Postives = 86/162 (53.09%), Query Frame = 2 
Query:  113 DDDNMVGEDSEDEVEQDLEILSPVAAMLNEHSGQEAAVEVRDDAVENLRPGPRDVALVKKSVTAELDHFLWLQSIWGMVIDLPPTREMIMTSWTYLVELLAAGRARKLTTRTGSTFILSRFQTWPDRLRTWINHESVQEVARTRQDDQGRHYLCCIINVVDE 598
            D+D  V +++ D    ++ + +  +A+L +H G+       DD +E +      +A V   +    D   W+  +W  V  L PTRE+I+ SW  L+ LL   +  K +TRT + F L RF TW  RLR WI H+++QEVA T + D  R  L CI N +DE
Sbjct:   51 DEDGHVDDETFDCCPAEVCLSAVASAVLQDHLGK--LERSADDIMEQM------LASVMNHLDQTCD---WMLPMWEKVKTLQPTRELIVCSWGSLLNLLENEKKNKPSTRTATAFTLKRFDTWEKRLRAWIEHDAIQEVAHTEKGDAARRTLSCICNTIDE 201
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BLAST of mRNA_Ecto-sp13_S_contig15366.4029.1 vs. uniprot
Match: A0A6H5KW14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW14_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.640e-18
Identity = 69/184 (37.50%), Postives = 71/184 (38.59%), Query Frame = 2 
Query:   95 GFSEDLDDDNMVGEDSEDEVEQDLEILSPVAAMLNEHSGQEAAVEVRDDAVENLRPGPRDVALVKKSVTAELDHFLWLQSIWGMVIDLPPTREMIMTSWTYLVELLAAGRARKLTTRTGSTFILSRFQTWPDRLRTWINHESVQEVARTRQDDQGRHYLCCIINVVDEELYRVLVEEREKSNTV 646
            GFSEDLDDDNMVGEDS+DEVEQDLEILSPVAAMLNEHSGQ                                                                                                                DQGRHYLCCIINVVDEELYRV V+EREKSNTV
Sbjct:   52 GFSEDLDDDNMVGEDSDDEVEQDLEILSPVAAMLNEHSGQ---------------------------------------------------------------------------------------------------------------GDQGRHYLCCIINVVDEELYRVFVKEREKSNTV 124
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15366.4029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K9K2_9PHAE1.880e-7979.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0V2_9PHAE1.370e-2035.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KW14_9PHAE1.640e-1837.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15366contigEcto-sp13_S_contig15366:2135..3967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size648
Hectar predicted targeting categoryother localisation
Exons4
Cds size522
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462817.5251346-CDS-Ecto-sp13_S_contig15366:2134..21821681462817.5251346-CDS-Ecto-sp13_S_contig15366:2134..2182Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15366 2135..2182 -
1681462817.5334785-CDS-Ecto-sp13_S_contig15366:2461..28451681462817.5334785-CDS-Ecto-sp13_S_contig15366:2461..2845Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15366 2462..2845 -
1681462817.5437067-CDS-Ecto-sp13_S_contig15366:3135..32251681462817.5437067-CDS-Ecto-sp13_S_contig15366:3135..3225Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15366 3136..3225 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462817.5586207-UTR-Ecto-sp13_S_contig15366:3225..32541681462817.5586207-UTR-Ecto-sp13_S_contig15366:3225..3254Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15366 3226..3254 -
1681462817.5698104-UTR-Ecto-sp13_S_contig15366:3872..39671681462817.5698104-UTR-Ecto-sp13_S_contig15366:3872..3967Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15366 3873..3967 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15366.4029.1prot_Ecto-sp13_S_contig15366.4029.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15366 2135..3225 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15366.4029.1

>prot_Ecto-sp13_S_contig15366.4029.1 ID=prot_Ecto-sp13_S_contig15366.4029.1|Name=mRNA_Ecto-sp13_S_contig15366.4029.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=174bp
MVGEDSEDEVEQDLEILSPVAAMLNEHSGQEAAVEVRDDAVENLRPGPRD
VALVKKSVTAELDHFLWLQSIWGMVIDLPPTREMIMTSWTYLVELLAAGR
ARKLTTRTGSTFILSRFQTWPDRLRTWINHESVQEVARTRQDDQGRHYLC
CIINVVDEELYRVLVEEREKSNTV
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mRNA from alignment at Ecto-sp13_S_contig15366:2135..3967-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15366.4029.1 ID=mRNA_Ecto-sp13_S_contig15366.4029.1|Name=mRNA_Ecto-sp13_S_contig15366.4029.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1833bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15366:2135..3967- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGTGACATGGAAGGGACTGCTCTGCGCGATGTGGTCACCGGATCGAAC
GAGGGAACAGGACCATCGCCAGTCAAGCCAAGAGACGTCTTCATGGTGAG
CTTACATATACCCTCCTTTTTTTGCGTTTGTCGTATCTACTGCTTCTGTT
CCTCGTCTGGCGTTTCAAGAGGTTGTAGAGAAAGACGATTTTTCAACTTT
TCCTCTTCAATCTTTTCCAAGCGCTTTCTTCTCCTTCTGGGAGAGATAAA
AGTGCTCCTGTAGTCAGCCCATGTGTGTCATGTAATGACTTCCCCTCCCT
TTGTTGTATGCTCTCTCTCTCTGGTAGGGAGTGGATTCACCCTTAGATGA
TAGCGACGACCGCGCGCATGGCGGTGACTCCCCAACGCCTATCCAAGATA
CCTAGCGTCATTTTAGTTTTGCTTTACACACTACGTGTTATGACCCTTTT
CAACGCCTGCTGTAGCCGTCGGTGTTTGTCCCTTCATAACATGAAAAGAT
GAATTATTGTCCCTGCTCGGTACCTCACAGCATCTCTGCCGTGGTCTCGC
CGCCGCGGACGTCGTGCATGGCGACAGACTTGTTCAATATATCGAGGAGA
AAAATGAGGGGACACATTAAAAACGAGGGACACATTCTTCAGAGCATGAT
ACAGCAGATAATCAGGTCTTCGAGTTCATGCGACCGCCCACTGGCTGTTC
GTTCTTACTCTAGGTTTCTCGGAGGATTTGGACGATGACAACATGGTCGG
AGAAGACTCGGAAGATGAGGTGGAACAGGATTTGGAGATTCTTTCCCCCG
TGGCTGCTATGCTGAACGAACACTCTGGCCAGGTGAGACCAAATATCCAG
GTGTGGTAGGTATGCGGATCGGCATGCAAGGTAGGGTTACGCATGGTGTC
GTGGCAAGCGGGTTCGAAAACATCGTCTTCTATCTACCAATAGATGATCC
GGACATGTAATAGTTCAGAGATCCGCCTGGCGCCGTCCGCTAGCTGCCTG
CGAATGCCCATAGACTCTGGACAGCAACGTCACCAATGTGTCGCTTCGAT
CTGCGAAGATACGCACTTACTCGCACTCACTCGTGCTTGTTTTCCTCAAA
ACCCTCTATGTCCGATTTTCAGGAAGCCGCTGTTGAAGTGCGGGACGACG
CCGTGGAAAACCTTCGGCCGGGTCCTCGTGATGTAGCGTTAGTGAAAAAA
AGCGTAACCGCCGAGCTAGACCATTTCCTTTGGCTGCAAAGTATTTGGGG
TATGGTCATCGACCTCCCCCCTACAAGAGAGATGATTATGACCTCCTGGA
CATACCTGGTAGAGCTTCTCGCCGCCGGCAGAGCACGCAAGCTTACGACA
AGGACAGGGTCCACTTTCATCTTGTCACGCTTCCAGACATGGCCCGACCG
GCTAAGAACGTGGATCAACCATGAAAGCGTTCAGGAAGTCGCGCGCACAC
GCCAGGACGACCAGGGCAGGCACTATCTGTGCTGCATTATCAACGTAGTG
GATGAGGTACGCACGCAAGGCGGCACTCACCGAGTACAACTCGCATGACC
GCGGTGTTTCGTCTGTAGTGTTGGGGAGAAGGAGTAAAAATAATTACAGC
AGTGTACAGGTAATTTTGGTGAGGTTTGATGACGGGGCGGGTTATATAAA
ATTACGTCAACTATCTTACAAGCTCGTAGTCCTTCTTAGTTCGCTCTAGT
TAGCCTTCCTTGGGCATCCCAATTTCTACTTTTTTTTTCTCGTTCAAATA
ATATTCTTAATCCGTATCCCCTCTGTGCACGCCAGGAGCTATACCGCGTG
CTCGTGGAAGAGAGGGAGAAATCGAACACGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15366:2135..3967-

>mRNA_Ecto-sp13_S_contig15366.4029.1 ID=mRNA_Ecto-sp13_S_contig15366.4029.1|Name=mRNA_Ecto-sp13_S_contig15366.4029.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=522bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15366:2135..3967- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCGGAGAAGACTCGGAAGATGAGGTGGAACAGGATTTGGAGATTCT
TTCCCCCGTGGCTGCTATGCTGAACGAACACTCTGGCCAGGAAGCCGCTG
TTGAAGTGCGGGACGACGCCGTGGAAAACCTTCGGCCGGGTCCTCGTGAT
GTAGCGTTAGTGAAAAAAAGCGTAACCGCCGAGCTAGACCATTTCCTTTG
GCTGCAAAGTATTTGGGGTATGGTCATCGACCTCCCCCCTACAAGAGAGA
TGATTATGACCTCCTGGACATACCTGGTAGAGCTTCTCGCCGCCGGCAGA
GCACGCAAGCTTACGACAAGGACAGGGTCCACTTTCATCTTGTCACGCTT
CCAGACATGGCCCGACCGGCTAAGAACGTGGATCAACCATGAAAGCGTTC
AGGAAGTCGCGCGCACACGCCAGGACGACCAGGGCAGGCACTATCTGTGC
TGCATTATCAACGTAGTGGATGAGGAGCTATACCGCGTGCTCGTGGAAGA
GAGGGAGAAATCGAACACGGTG
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