mRNA_Ecto-sp13_S_contig15355.4022.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15355.4022.1
Unique NamemRNA_Ecto-sp13_S_contig15355.4022.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15355.4022.1 vs. uniprot
Match: D7FM48_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM48_ECTSI)

HSP 1 Score: 864 bits (2233), Expect = 2.570e-310
Identity = 496/585 (84.79%), Postives = 511/585 (87.35%), Query Frame = 1 
Query:  295 MPLATAATTAVPPAPSAQSPAAAAVLFGTENYPPVGASSGVDRLRKRSRLCLGKHRRALPSQHAAVSQPSLGTAGSPSFQERFRSPYTSSAALAPPAEAIGYPWGTSPGLSEGRIDRAGVLAPATWTIGRPSSGQSPPFVGLENLGETCYVNAVLQALTACHGALTSSHGGGGGWHDVGSEXXXXXXXXXXXXXXXXXXXXXAGTAVPVGGETGTQRDPVLIALEQVLGEMETRNRALFQQQLVAAGSETAVSPPAEPESTGSGATSSPESKTCQPYHQTPLRPSASTGEGVLVEAIAPTSLIELIRGGWLSADRARLGGGGAGAAGLTDFGTGQACVSELLGKFLGLVVDDRGSRPTSPGGVGGQRRSGGTHSSSLCGLAQAFRGTLCARTLCVECERDRTARENFTELTLPPLLPP-QHAPPLTAQGAIPAAENDGGPSLRGRRRTMQTLVDGVFESESLAGNNKLSDSGGGFYDLIGAILHQGQTLASGHYTFARHAA--DSASFLEQXXXXXXXXXXXXXXXXXXXXXXXXXXXSTCGKSSVALFDDATVRWLSPEEERAVLRGGGGGFGDPFLVFYARRP 2040
            MP ATAATTAV PAPSAQS   AAVLFG EN+PPVG+SSGV+RLRKRSRLCLGK RRALP+QHAAV QPS+GTAGSPSFQERFRSP+TSSAALAPPAEAIGYPWG SPGLSE  +DRAGVLAPA WTI RPSSG SPPFVGL+NLGETCYVNAVLQALTACHG LTSS GGGGGWHDVGSE                      GTAV V G TGTQR+PVL ALEQVLGEMETRNRAL QQQLVA GS+TAVS PAEPESTGSGATSSPESKTCQPY QTPLRPSASTGEGVLVEAIAPT L+ELIRGGWLSADR+RLGGGGAGA G T+FGTGQACVSELLGKFLGLVVDD GS  TS GGVGG RRSGG+HSSS C LAQAFRGTLCARTLCVECERDRTARE+FTELTLPPLLPP QHAPPLTAQGAIPAAENDGGPSLRGRRRTMQTLVDGVFE ESLAGNNKL DSG  FYDLIG ILHQGQTLASGHYTFA HAA  DSASFLE XXXXXXXXXXXXXXXXXXXXXXXX   STCGK   ALFDDATV WLSPEEERAVLRGGGG FGDPFLVFYARRP
Sbjct:    1 MPHATAATTAVTPAPSAQS--RAAVLFGAENHPPVGSSSGVNRLRKRSRLCLGKRRRALPAQHAAVGQPSIGTAGSPSFQERFRSPFTSSAALAPPAEAIGYPWGASPGLSETCLDRAGVLAPAAWTIERPSSGPSPPFVGLKNLGETCYVNAVLQALTACHGVLTSSRGGGGGWHDVGSEGSEGSCSTPPAADAAPAGAASEGTAVLVAGVTGTQRNPVLAALEQVLGEMETRNRALSQQQLVAFGSQTAVSSPAEPESTGSGATSSPESKTCQPYDQTPLRPSASTGEGVLVEAIAPTFLVELIRGGWLSADRSRLGGGGAGATGSTEFGTGQACVSELLGKFLGLVVDDGGSGATSLGGVGG-RRSGGSHSSSFCCLAQAFRGTLCARTLCVECERDRTAREDFTELTLPPLLPPPQHAPPLTAQGAIPAAENDGGPSLRGRRRTMQTLVDGVFEGESLAGNNKLCDSGDVFYDLIGVILHQGQTLASGHYTFALHAAAGDSASFLEXXXXXXXXXXXXXXXXXXXXXXXXXG--STCGKPGFALFDDATVGWLSPEEERAVLRGGGGVFGDPFLVFYARRP 580
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BLAST of mRNA_Ecto-sp13_S_contig15355.4022.1 vs. uniprot
Match: A0A6H5L2L7_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L7_9PHAE)

HSP 1 Score: 523 bits (1348), Expect = 8.720e-177
Identity = 324/540 (60.00%), Postives = 335/540 (62.04%), Query Frame = 1 
Query:  784 ALTSSHGGGGGWHDVGSEXXXXXXXXXXXXXXXXXXXXXAGTAVPVGGETGTQRDPVLIALEQVLGEMETRNRALFQQQLVAAGSETAVSPPAEPESTGSGATSSPESKTCQPYHQTPLRPSASTGEGVLVEAIAPTSLIELIRGGWLSADRARLGGGGAGAAGLTDFGTGQACVSELLGKFLGLVVDDRGSRPTSPGGVGGQRRSGGTHSSSLCGLAQAFRGTLCARTLCVECERDRTARENFTELTLPPLLPPQHAPPLTAQGAIPAAENDGGPSLRGRRRTMQTLVDGVFESESLAGNNK----------------------------------------------------------------------------------------------------------------------LSDSGGGFYDLIGAILHQGQTLASGHYTFARHAA--DSASFL-EQXXXXXXXXXXXXXXXXXXXXXXXXXXXSTCGKSSVALFDDATVRWLSPEEERAVLRGGGGGFGDPFLVFYARRP 2040
            AL SS GGGGGWHDVGSE                     AGTA PVG ETGTQR+PVL+ALEQVLGEMETRNRALFQQQLVAAGS+TAVSPPAEPEST SGATSS ESKTCQ + QTPLRPSASTGEGV VE+IAPTSL+ELI GGWLSADRARLGGGGAG  G TDFGTGQACVSELLGKFLGLVVDD               RSGGTHSSS CGLAQAFRGTLCARTLCVECERDRTARE+FTELTLPPLLPPQHAPPLTAQ AIPAAENDGGPSLRGR RT+QTL+DGVFE ESLAGNNK                                                                                                                      L DSG  FYDLIGAILHQGQTLASGHYTFA +AA  D ASFL +QXXXXXXX                    ST GK   ALFDDATVRWLS EEERAVLRG GGGFGDPFLVFYARRP
Sbjct:    2 ALASSSGGGGGWHDVGSEGSEGVSSTPPAADAAPAGAALAGTAAPVGRETGTQRNPVLVALEQVLGEMETRNRALFQQQLVAAGSQTAVSPPAEPESTSSGATSSAESKTCQWFDQTPLRPSASTGEGVRVESIAPTSLVELIHGGWLSADRARLGGGGAGTTGSTDFGTGQACVSELLGKFLGLVVDDXXXXXXXXXXXX-XXRSGGTHSSSFCGLAQAFRGTLCARTLCVECERDRTAREDFTELTLPPLLPPQHAPPLTAQRAIPAAENDGGPSLRGRHRTIQTLIDGVFERESLAGNNKVWCEACRQWTEAERRSSVHSPPGLLALHVRPGTRKRSSPCLYPKALARASGGAPDSVVGDVRRGADGRLPAGSREEAIERTLVVRKAARCQFHGGGVNSXXXXXXXXXXXSVDSCTGQLCDSGDIFYDLIGAILHQGQTLASGHYTFAINAAAGDWASFLAQQXXXXXXXADRDNRALVQQGPPGATAAGSTYGKPDFALFDDATVRWLSLEEERAVLRGDGGGFGDPFLVFYARRP 540
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15355.4022.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FM48_ECTSI2.570e-31084.79USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L2L7_9PHAE8.720e-17760.00USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15355contigEcto-sp13_S_contig15355:974..3376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2043
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionPeptidase C19, ubiquitin carboxyl-terminal hydrolase
Ec32 orthologEc-01_010630.1
Cds size2043
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462816.9485457-CDS-Ecto-sp13_S_contig15355:973..13241681462816.9485457-CDS-Ecto-sp13_S_contig15355:973..1324Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15355 974..1324 -
1681462816.9673915-CDS-Ecto-sp13_S_contig15355:1684..33761681462816.9673915-CDS-Ecto-sp13_S_contig15355:1684..3376Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15355 1685..3376 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15355.4022.1prot_Ecto-sp13_S_contig15355.4022.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15355 974..3376 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15355.4022.1

>prot_Ecto-sp13_S_contig15355.4022.1 ID=prot_Ecto-sp13_S_contig15355.4022.1|Name=mRNA_Ecto-sp13_S_contig15355.4022.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=681bp
MPRRYDTRSTTKASCSTAAAVAANAQAISNPTSGTAGHAAAEAALLAPPP
RISSQVVTGDGQQREILPAAAAAAAAALGATKRADSHLFPQVARKVPDMP
LATAATTAVPPAPSAQSPAAAAVLFGTENYPPVGASSGVDRLRKRSRLCL
GKHRRALPSQHAAVSQPSLGTAGSPSFQERFRSPYTSSAALAPPAEAIGY
PWGTSPGLSEGRIDRAGVLAPATWTIGRPSSGQSPPFVGLENLGETCYVN
AVLQALTACHGALTSSHGGGGGWHDVGSEGSEGSSSTPPAADAAPAGAAS
AGTAVPVGGETGTQRDPVLIALEQVLGEMETRNRALFQQQLVAAGSETAV
SPPAEPESTGSGATSSPESKTCQPYHQTPLRPSASTGEGVLVEAIAPTSL
IELIRGGWLSADRARLGGGGAGAAGLTDFGTGQACVSELLGKFLGLVVDD
RGSRPTSPGGVGGQRRSGGTHSSSLCGLAQAFRGTLCARTLCVECERDRT
ARENFTELTLPPLLPPQHAPPLTAQGAIPAAENDGGPSLRGRRRTMQTLV
DGVFESESLAGNNKLSDSGGGFYDLIGAILHQGQTLASGHYTFARHAADS
ASFLEQQQQQQQQADRDNRALEQQGPPGAAAAGSTCGKSSVALFDDATVR
WLSPEEERAVLRGGGGGFGDPFLVFYARRP*
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mRNA from alignment at Ecto-sp13_S_contig15355:974..3376-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15355.4022.1 ID=mRNA_Ecto-sp13_S_contig15355.4022.1|Name=mRNA_Ecto-sp13_S_contig15355.4022.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2403bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15355:974..3376- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCCGTCGCTACGACACTCGATCTACCACAAAGGCGTCATGTAGCAC
AGCAGCAGCGGTCGCAGCCAACGCTCAGGCAATCTCCAACCCAACGAGCG
GCACGGCGGGGCATGCTGCAGCCGAAGCAGCGCTATTAGCCCCCCCCCCT
CGGATCTCGAGCCAAGTAGTGACGGGCGACGGGCAGCAGCGGGAGATATT
GCCAGCAGCGGCAGCAGCAGCAGCAGCAGCATTGGGAGCGACCAAACGTG
CTGACTCTCATCTCTTTCCACAAGTGGCACGAAAAGTACCAGACATGCCG
CTCGCCACAGCAGCAACAACAGCAGTTCCACCAGCGCCATCAGCACAATC
ACCAGCGGCCGCCGCAGTACTGTTCGGGACGGAAAACTACCCTCCTGTCG
GAGCAAGCAGCGGAGTCGACCGTCTCAGGAAGAGGTCGAGGCTTTGCCTT
GGCAAGCATCGTCGCGCGTTGCCGTCGCAGCACGCGGCGGTTAGTCAGCC
GTCCCTCGGCACAGCAGGCTCTCCGTCGTTCCAGGAACGATTTCGCTCGC
CCTACACTTCGTCCGCTGCGCTCGCCCCCCCCGCCGAGGCCATAGGCTAC
CCTTGGGGTACATCGCCGGGTTTAAGCGAGGGCCGCATCGATAGGGCAGG
AGTTCTCGCGCCGGCTACTTGGACGATTGGGCGCCCGTCAAGTGGGCAGT
CGCCGCCATTCGTTGGGCTCGAGAACCTGGGAGAGACGTGCTACGTGAAC
GCCGTGCTGCAGGCTCTGACAGCGTGCCATGGGGCGCTCACGTCGAGTCA
CGGGGGTGGTGGTGGATGGCACGACGTAGGGAGCGAGGGGTCAGAAGGAT
CATCTTCGACCCCACCAGCAGCCGATGCTGCACCTGCCGGTGCTGCTTCT
GCGGGAACAGCAGTGCCGGTTGGGGGGGAAACGGGAACCCAAAGGGATCC
GGTGCTTATCGCTCTGGAGCAGGTACTGGGAGAGATGGAAACACGCAACC
GTGCGCTGTTTCAGCAGCAATTGGTGGCCGCTGGGTCGGAGACGGCTGTT
TCACCGCCCGCTGAACCCGAGTCGACCGGCAGCGGTGCTACTAGTAGCCC
GGAGTCCAAGACGTGCCAACCATACCACCAAACGCCGCTCCGACCGAGCG
CTTCGACGGGGGAAGGCGTTCTTGTTGAGGCAATCGCGCCGACTTCTTTG
ATAGAGCTGATTCGTGGAGGGTGGCTGAGCGCTGACCGCGCGCGACTCGG
AGGCGGGGGGGCGGGGGCTGCGGGGTTGACTGATTTCGGAACAGGGCAAG
CGTGTGTCTCCGAGCTCTTGGGGAAGTTTCTCGGTCTCGTCGTCGACGAC
CGCGGCAGCAGGCCCACTTCTCCGGGCGGTGTTGGCGGGCAGAGGAGGAG
CGGCGGCACTCACAGCAGTAGCTTGTGCGGCTTGGCCCAGGCGTTTCGCG
GGACACTCTGCGCCCGTACTCTGTGCGTAGAGTGCGAGCGGGACAGAACC
GCCCGCGAGAACTTCACCGAGCTAACCCTGCCGCCCCTCCTACCGCCGCA
GCACGCCCCACCTCTCACGGCGCAAGGAGCTATACCGGCGGCCGAGAACG
ATGGCGGGCCTTCGCTCCGGGGGCGGCGCCGGACAATGCAGACCCTCGTC
GATGGGGTGTTCGAGAGCGAGTCCCTGGCGGGCAACAACAAGGTCTGGTG
CGAGGCGTGCCGTCAGTGGACGGAAGCAGAGCGCCGGTCTTCGGTCCACT
CGCCACCCGGCCTGCTGGCCTTGCACGTTCGCCCGGGGACGCGGAAACGC
TCGTCGCCGTGCCCATACCCGACGGCGCTCGCTCGTGCCTCTGGCGGGGC
CCCCGAGAGCGTGGTGGGTGATGTGCGTCGTGGAGCGGAGGGGCGACTGA
CCGCGGGCAGCGGGGAGGAGGCAATCGAGCGTACGCTGGTCCTGAAAAAG
GCCGCGAGGTGTCAGTTCCACGACGACGGCGTTAGCAACAGCAGTAGCGG
CAGCAGCAGCAGCAGTAGCAGCAGAAGCAGGGTCTCCTCTTGCACCGGTC
AGCTTTCCGATTCGGGGGGCGGTTTCTACGACCTGATCGGCGCCATCCTC
CACCAGGGACAGACCCTTGCTTCCGGCCACTACACCTTCGCGCGTCATGC
CGCTGACTCGGCGTCGTTTCTGGAGCAGCAGCAGCAGCAGCAGCAGCAGG
CGGACAGGGACAATCGGGCGTTGGAGCAACAAGGACCGCCAGGGGCAGCC
GCAGCTGGTTCGACGTGTGGGAAGTCGAGTGTCGCGCTTTTCGACGACGC
CACGGTTAGGTGGTTGTCTCCGGAAGAGGAGCGCGCTGTCTTGAGGGGAG
GCGGCGGAGGTTTCGGCGATCCGTTCTTGGTGTTTTACGCTCGGCGGCCA
TGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15355:974..3376-

>mRNA_Ecto-sp13_S_contig15355.4022.1 ID=mRNA_Ecto-sp13_S_contig15355.4022.1|Name=mRNA_Ecto-sp13_S_contig15355.4022.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2043bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15355:974..3376- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCCGTCGCTACGACACTCGATCTACCACAAAGGCGTCATGTAGCAC
AGCAGCAGCGGTCGCAGCCAACGCTCAGGCAATCTCCAACCCAACGAGCG
GCACGGCGGGGCATGCTGCAGCCGAAGCAGCGCTATTAGCCCCCCCCCCT
CGGATCTCGAGCCAAGTAGTGACGGGCGACGGGCAGCAGCGGGAGATATT
GCCAGCAGCGGCAGCAGCAGCAGCAGCAGCATTGGGAGCGACCAAACGTG
CTGACTCTCATCTCTTTCCACAAGTGGCACGAAAAGTACCAGACATGCCG
CTCGCCACAGCAGCAACAACAGCAGTTCCACCAGCGCCATCAGCACAATC
ACCAGCGGCCGCCGCAGTACTGTTCGGGACGGAAAACTACCCTCCTGTCG
GAGCAAGCAGCGGAGTCGACCGTCTCAGGAAGAGGTCGAGGCTTTGCCTT
GGCAAGCATCGTCGCGCGTTGCCGTCGCAGCACGCGGCGGTTAGTCAGCC
GTCCCTCGGCACAGCAGGCTCTCCGTCGTTCCAGGAACGATTTCGCTCGC
CCTACACTTCGTCCGCTGCGCTCGCCCCCCCCGCCGAGGCCATAGGCTAC
CCTTGGGGTACATCGCCGGGTTTAAGCGAGGGCCGCATCGATAGGGCAGG
AGTTCTCGCGCCGGCTACTTGGACGATTGGGCGCCCGTCAAGTGGGCAGT
CGCCGCCATTCGTTGGGCTCGAGAACCTGGGAGAGACGTGCTACGTGAAC
GCCGTGCTGCAGGCTCTGACAGCGTGCCATGGGGCGCTCACGTCGAGTCA
CGGGGGTGGTGGTGGATGGCACGACGTAGGGAGCGAGGGGTCAGAAGGAT
CATCTTCGACCCCACCAGCAGCCGATGCTGCACCTGCCGGTGCTGCTTCT
GCGGGAACAGCAGTGCCGGTTGGGGGGGAAACGGGAACCCAAAGGGATCC
GGTGCTTATCGCTCTGGAGCAGGTACTGGGAGAGATGGAAACACGCAACC
GTGCGCTGTTTCAGCAGCAATTGGTGGCCGCTGGGTCGGAGACGGCTGTT
TCACCGCCCGCTGAACCCGAGTCGACCGGCAGCGGTGCTACTAGTAGCCC
GGAGTCCAAGACGTGCCAACCATACCACCAAACGCCGCTCCGACCGAGCG
CTTCGACGGGGGAAGGCGTTCTTGTTGAGGCAATCGCGCCGACTTCTTTG
ATAGAGCTGATTCGTGGAGGGTGGCTGAGCGCTGACCGCGCGCGACTCGG
AGGCGGGGGGGCGGGGGCTGCGGGGTTGACTGATTTCGGAACAGGGCAAG
CGTGTGTCTCCGAGCTCTTGGGGAAGTTTCTCGGTCTCGTCGTCGACGAC
CGCGGCAGCAGGCCCACTTCTCCGGGCGGTGTTGGCGGGCAGAGGAGGAG
CGGCGGCACTCACAGCAGTAGCTTGTGCGGCTTGGCCCAGGCGTTTCGCG
GGACACTCTGCGCCCGTACTCTGTGCGTAGAGTGCGAGCGGGACAGAACC
GCCCGCGAGAACTTCACCGAGCTAACCCTGCCGCCCCTCCTACCGCCGCA
GCACGCCCCACCTCTCACGGCGCAAGGAGCTATACCGGCGGCCGAGAACG
ATGGCGGGCCTTCGCTCCGGGGGCGGCGCCGGACAATGCAGACCCTCGTC
GATGGGGTGTTCGAGAGCGAGTCCCTGGCGGGCAACAACAAGCTTTCCGA
TTCGGGGGGCGGTTTCTACGACCTGATCGGCGCCATCCTCCACCAGGGAC
AGACCCTTGCTTCCGGCCACTACACCTTCGCGCGTCATGCCGCTGACTCG
GCGTCGTTTCTGGAGCAGCAGCAGCAGCAGCAGCAGCAGGCGGACAGGGA
CAATCGGGCGTTGGAGCAACAAGGACCGCCAGGGGCAGCCGCAGCTGGTT
CGACGTGTGGGAAGTCGAGTGTCGCGCTTTTCGACGACGCCACGGTTAGG
TGGTTGTCTCCGGAAGAGGAGCGCGCTGTCTTGAGGGGAGGCGGCGGAGG
TTTCGGCGATCCGTTCTTGGTGTTTTACGCTCGGCGGCCATGA
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