mRNA_Ecto-sp13_S_contig15338.4012.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15338.4012.1
Unique NamemRNA_Ecto-sp13_S_contig15338.4012.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15338.4012.1 vs. uniprot
Match: D7FN81_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN81_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 4.360e-38
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 1 
Query:    1 RYTAHTPLLDLRPLPTTALRNPKFESLYRYQHFNPIQTQLFHVLYHSDESVLLGAPTGSGKTAVAEIAIM 210
            RYTAHTPLLDLRPLPTTAL+NPKFESLYRYQHFNPIQTQLFHVLYHSDESVLLGAPTGSGKTAVAEIAIM
Sbjct: 1426 RYTAHTPLLDLRPLPTTALQNPKFESLYRYQHFNPIQTQLFHVLYHSDESVLLGAPTGSGKTAVAEIAIM 1495
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BLAST of mRNA_Ecto-sp13_S_contig15338.4012.1 vs. uniprot
Match: A0A7R8W5S6_9CRUS (Hypothetical protein n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8W5S6_9CRUS)

HSP 1 Score: 111 bits (278), Expect = 5.150e-27
Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 1 
Query:    1 RYTAHTPLLDLRPLPTTALRNPKFESLYRYQHFNPIQTQLFHVLYHSDESVLLGAPTGSGKTAVAEIAI 207
            R+  HT LLDL+PLP TAL+NP+F+SLY++ HFNPIQTQ+FHVLYH+D +VLLGAPTGSGKT  AEIA+
Sbjct: 1298 RHPPHTELLDLQPLPVTALKNPEFQSLYKFTHFNPIQTQIFHVLYHTDHNVLLGAPTGSGKTIAAEIAM 1366
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BLAST of mRNA_Ecto-sp13_S_contig15338.4012.1 vs. uniprot
Match: A0A8C7XCK4_9TELE (Activating signal cointegrator 1 complex subunit 3 n=1 Tax=Oryzias sinensis TaxID=183150 RepID=A0A8C7XCK4_9TELE)

HSP 1 Score: 108 bits (271), Expect = 4.530e-26
Identity = 49/70 (70.00%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:    1 RYTAHTPLLDLRPLPTTALRNPKFESLYRYQHFNPIQTQLFHVLYHSDESVLLGAPTGSGKTAVAEIAIM 210
            R+  HT LLDL+PLP  ALRNP++ESLY++ HFNPIQTQ+FH LYH+D +VLLGAPTGSGKT  AE+AI+
Sbjct:  830 RHPPHTELLDLQPLPVIALRNPEYESLYKFTHFNPIQTQIFHTLYHTDTNVLLGAPTGSGKTIAAEMAIV 899
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BLAST of mRNA_Ecto-sp13_S_contig15338.4012.1 vs. uniprot
Match: A0A8C8DKB5_9TELE (Activating signal cointegrator 1 complex subunit 3 n=2 Tax=Oryzias sinensis TaxID=183150 RepID=A0A8C8DKB5_9TELE)

HSP 1 Score: 108 bits (271), Expect = 4.530e-26
Identity = 49/70 (70.00%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:    1 RYTAHTPLLDLRPLPTTALRNPKFESLYRYQHFNPIQTQLFHVLYHSDESVLLGAPTGSGKTAVAEIAIM 210
            R+  HT LLDL+PLP  ALRNP++ESLY++ HFNPIQTQ+FH LYH+D +VLLGAPTGSGKT  AE+AI+
Sbjct:  862 RHPPHTELLDLQPLPVIALRNPEYESLYKFTHFNPIQTQIFHTLYHTDTNVLLGAPTGSGKTIAAEMAIV 931
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BLAST of mRNA_Ecto-sp13_S_contig15338.4012.1 vs. uniprot
Match: A0A2I0IVT6_PUNGR (Uncharacterized protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0IVT6_PUNGR)

HSP 1 Score: 108 bits (270), Expect = 6.180e-26
Identity = 48/68 (70.59%), Postives = 59/68 (86.76%), Query Frame = 1 
Query:    7 TAHTPLLDLRPLPTTALRNPKFESLYRYQHFNPIQTQLFHVLYHSDESVLLGAPTGSGKTAVAEIAIM 210
            T HT LLDL+PLP T+LRNP +ESLY++ HFNPIQTQ FH+LYH+D +VLLGAPTGSGKT  AE+A++
Sbjct:  647 TMHTELLDLKPLPVTSLRNPTYESLYKFSHFNPIQTQAFHILYHTDNNVLLGAPTGSGKTISAELAML 714
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BLAST of mRNA_Ecto-sp13_S_contig15338.4012.1 vs. uniprot
Match: A0A0A0LQL5_CUCSA (Uncharacterized protein n=1 Tax=Cucumis sativus TaxID=3659 RepID=A0A0A0LQL5_CUCSA)

HSP 1 Score: 108 bits (270), Expect = 6.180e-26
Identity = 48/69 (69.57%), Postives = 61/69 (88.41%), Query Frame = 1 
Query:    4 YTAHTPLLDLRPLPTTALRNPKFESLYRYQHFNPIQTQLFHVLYHSDESVLLGAPTGSGKTAVAEIAIM 210
            +T+HT LLDL+PLP TAL N  +ESLY++ HFNPIQTQ+FHVLYHSD+++LLGAPTGSGKT  AE+A++
Sbjct: 1254 HTSHTELLDLKPLPITALGNRSYESLYKFSHFNPIQTQIFHVLYHSDDNILLGAPTGSGKTISAELAML 1322
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BLAST of mRNA_Ecto-sp13_S_contig15338.4012.1 vs. uniprot
Match: E9H7W7_DAPPU (Uncharacterized protein n=6 Tax=Daphnia TaxID=6668 RepID=E9H7W7_DAPPU)

HSP 1 Score: 108 bits (270), Expect = 6.190e-26
Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 1 
Query:    1 RYTAHTPLLDLRPLPTTALRNPKFESLYRYQHFNPIQTQLFHVLYHSDESVLLGAPTGSGKTAVAEIAI 207
            R+  HT LLDL+PLP TAL+NP+++SLY + +FNPIQTQLFHVLYH+D +VLLGAPTGSGKT VAEIA+
Sbjct: 1029 RHPPHTGLLDLKPLPVTALKNPEWQSLYSFPYFNPIQTQLFHVLYHTDHNVLLGAPTGSGKTIVAEIAM 1097
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BLAST of mRNA_Ecto-sp13_S_contig15338.4012.1 vs. uniprot
Match: A0A218VXB9_PUNGR (Uncharacterized protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A218VXB9_PUNGR)

HSP 1 Score: 108 bits (270), Expect = 6.200e-26
Identity = 48/68 (70.59%), Postives = 59/68 (86.76%), Query Frame = 1 
Query:    7 TAHTPLLDLRPLPTTALRNPKFESLYRYQHFNPIQTQLFHVLYHSDESVLLGAPTGSGKTAVAEIAIM 210
            T HT LLDL+PLP T+LRNP +ESLY++ HFNPIQTQ FH+LYH+D +VLLGAPTGSGKT  AE+A++
Sbjct: 1152 TMHTELLDLKPLPVTSLRNPTYESLYKFSHFNPIQTQAFHILYHTDNNVLLGAPTGSGKTISAELAML 1219
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15338.4012.1 vs. uniprot
Match: A0A6P8ECM0_PUNGR (DExH-box ATP-dependent RNA helicase DExH14 isoform X1 n=2 Tax=Punica granatum TaxID=22663 RepID=A0A6P8ECM0_PUNGR)

HSP 1 Score: 108 bits (270), Expect = 6.200e-26
Identity = 48/68 (70.59%), Postives = 59/68 (86.76%), Query Frame = 1 
Query:    7 TAHTPLLDLRPLPTTALRNPKFESLYRYQHFNPIQTQLFHVLYHSDESVLLGAPTGSGKTAVAEIAIM 210
            T HT LLDL+PLP T+LRNP +ESLY++ HFNPIQTQ FH+LYH+D +VLLGAPTGSGKT  AE+A++
Sbjct: 1261 TMHTELLDLKPLPVTSLRNPTYESLYKFSHFNPIQTQAFHILYHTDNNVLLGAPTGSGKTISAELAML 1328
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15338.4012.1 vs. uniprot
Match: UPI001EE5E0DB (LOW QUALITY PROTEIN: activating signal cointegrator 1 complex subunit 3-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE5E0DB)

HSP 1 Score: 108 bits (269), Expect = 8.440e-26
Identity = 48/69 (69.57%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:    1 RYTAHTPLLDLRPLPTTALRNPKFESLYRYQHFNPIQTQLFHVLYHSDESVLLGAPTGSGKTAVAEIAI 207
            R+  HT LLDL+PLP TAL+NP++E+LYR+ HFNPIQTQ+FH +YH+D +VLLGAPTGSGKT  AE+AI
Sbjct: 1292 RHPPHTELLDLQPLPVTALKNPQYEALYRFTHFNPIQTQIFHTVYHNDCNVLLGAPTGSGKTVAAELAI 1360
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15338.4012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN81_ECTSI4.360e-3898.57Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7R8W5S6_9CRUS5.150e-2772.46Hypothetical protein n=1 Tax=Cyprideis torosa TaxI... [more]
A0A8C7XCK4_9TELE4.530e-2670.00Activating signal cointegrator 1 complex subunit 3... [more]
A0A8C8DKB5_9TELE4.530e-2670.00Activating signal cointegrator 1 complex subunit 3... [more]
A0A2I0IVT6_PUNGR6.180e-2670.59Uncharacterized protein n=1 Tax=Punica granatum Ta... [more]
A0A0A0LQL5_CUCSA6.180e-2669.57Uncharacterized protein n=1 Tax=Cucumis sativus Ta... [more]
E9H7W7_DAPPU6.190e-2672.46Uncharacterized protein n=6 Tax=Daphnia TaxID=6668... [more]
A0A218VXB9_PUNGR6.200e-2670.59Uncharacterized protein n=1 Tax=Punica granatum Ta... [more]
A0A6P8ECM0_PUNGR6.200e-2670.59DExH-box ATP-dependent RNA helicase DExH14 isoform... [more]
UPI001EE5E0DB8.440e-2669.57LOW QUALITY PROTEIN: activating signal cointegrato... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15338contigEcto-sp13_S_contig15338:3084..3836 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score144.4
Seed ortholog evalue2e-32
Seed eggNOG ortholog2880.D7FN81
Model size210
KEGG koko:K12854,ko:K18663
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.response to ionizing radiation
EggNOG OGsCOG1204@1,KOG0952@2759
EC3.6.4.12,3.6.4.13
Cds size210
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462816.2990298-CDS-Ecto-sp13_S_contig15338:3083..32071681462816.2990298-CDS-Ecto-sp13_S_contig15338:3083..3207Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15338 3084..3207 -
1681462816.3096735-CDS-Ecto-sp13_S_contig15338:3750..38361681462816.3096735-CDS-Ecto-sp13_S_contig15338:3750..3836Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15338 3751..3836 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15338.4012.1prot_Ecto-sp13_S_contig15338.4012.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15338 3084..3836 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15338.4012.1

>prot_Ecto-sp13_S_contig15338.4012.1 ID=prot_Ecto-sp13_S_contig15338.4012.1|Name=mRNA_Ecto-sp13_S_contig15338.4012.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=70bp
RYTAHTPLLDLRPLPTTALRNPKFESLYRYQHFNPIQTQLFHVLYHSDES
VLLGAPTGSGKTAVAEIAIM
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mRNA from alignment at Ecto-sp13_S_contig15338:3084..3836-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15338.4012.1 ID=mRNA_Ecto-sp13_S_contig15338.4012.1|Name=mRNA_Ecto-sp13_S_contig15338.4012.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=753bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15338:3084..3836- (Ectocarpus species13 EcNAP12_S_4_19m)
AGATACACCGCGCACACACCCCTGCTCGATTTGAGGCCACTGCCCACGAC
GGCGCTGCGGAACCCCAAGTTCGAGAGCCTCTACCGGTAAGGACGGCTAC
ATGCGTATTTCGGTGTTTTCAAATGGTCGATTGCAGTACACGGGGATGAA
CTGTTCGTGTCCCCTATGTACGTGGAGTTCCTGTACGTCCGTGGACTGTT
GCGTGTTCTTGTGGCCCGCGCCCAACTGACAAGTTCTGCTTCACAGCGTT
GACAAACCGCCGCGGTTCCGCGGTGAACCACAGCGACCAATCAATCGGAG
GCGCCGGACATGTGTCATCGCCCTGATATGAACTCAAAACCTTTTTCCGT
GGTACATGTAGCTGTGACTTGCTGTGGAACCCGACTCGGGTAGCCACCGC
AATGAGATGTGTGTCCCTGGATTCTCCCCTTTTTCCGTGGATGTACACAG
GGACGGTGCCATAGTCACTCACTCTCAGCGTTGTCGTTTCTGTCACGACT
TGGAAGCGACGTCGGCAGAACATCCGGAAACACCCGTGAGTAGCACACTA
CGGGGAAGATAAGCCAAACTGCAACAAGAAGACGACTACCAACAACACTC
CGCCCCCCCCCCCTGCGGCCCAAACGCAGGTACCAGCACTTCAATCCCAT
CCAGACGCAGCTCTTCCACGTGCTCTACCACAGCGACGAGAGCGTGCTGC
TGGGCGCGCCCACGGGGTCGGGAAAGACCGCCGTCGCCGAGATCGCCATC
ATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15338:3084..3836-

>mRNA_Ecto-sp13_S_contig15338.4012.1 ID=mRNA_Ecto-sp13_S_contig15338.4012.1|Name=mRNA_Ecto-sp13_S_contig15338.4012.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15338:3084..3836- (Ectocarpus species13 EcNAP12_S_4_19m)
AGATACACCGCGCACACACCCCTGCTCGATTTGAGGCCACTGCCCACGAC
GGCGCTGCGGAACCCCAAGTTCGAGAGCCTCTACCGGTACCAGCACTTCA
ATCCCATCCAGACGCAGCTCTTCCACGTGCTCTACCACAGCGACGAGAGC
GTGCTGCTGGGCGCGCCCACGGGGTCGGGAAAGACCGCCGTCGCCGAGAT
CGCCATCATG
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