mRNA_Ecto-sp13_S_contig15316.3998.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15316.3998.1
Unique NamemRNA_Ecto-sp13_S_contig15316.3998.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15316.3998.1 vs. uniprot
Match: A0A6H5KNK6_9PHAE (Palmitoyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNK6_9PHAE)

HSP 1 Score: 496 bits (1277), Expect = 2.750e-169
Identity = 238/240 (99.17%), Postives = 239/240 (99.58%), Query Frame = 1
Query:    1 GRIMLGVHYRQLMTTTMLLFLTWLLFFVFILPSYGRWSFALVAACLCTGCFVSLVFSSFLDPGIIPRRAASGLPDSIPEDVRDQLSYCITCHIVRPPRTKHCKHCNNCVLTFDHHCPWTGNCVGARNYRAFMAFIILVTISSSLVCAMSVVHTVTRTGHVGPMYLTDSVNLPGSRFVSPVLGMWTAMITVLVGALLCFHVYLLAKGQTTNEYLRGEKRRGNVPHRSFGPNCRELWCGTQP 720
            GRIMLGVHYRQLMTTTMLLFLTWLLFFVFILPSYGRWSFA+VAACLCTGCFVSLVFSSFLDPGIIPRRAASGLPDSIPEDVRDQLSYCITCHIVRPPRTKHCKHCNNCVLTFDHHCPWTGNCVGARNYRAFMAFIILVTISSSLVCAMSVVHTVTRTGHVGPMYLTDSVNLPGSR VSPVLGMWTAMITVLVGALLCFHVYLLAKGQTTNEYLRGEKRRGNVPHRSFGPNCRELWCGTQP
Sbjct:  542 GRIMLGVHYRQLMTTTMLLFLTWLLFFVFILPSYGRWSFAMVAACLCTGCFVSLVFSSFLDPGIIPRRAASGLPDSIPEDVRDQLSYCITCHIVRPPRTKHCKHCNNCVLTFDHHCPWTGNCVGARNYRAFMAFIILVTISSSLVCAMSVVHTVTRTGHVGPMYLTDSVNLPGSRLVSPVLGMWTAMITVLVGALLCFHVYLLAKGQTTNEYLRGEKRRGNVPHRSFGPNCRELWCGTQP 781          
BLAST of mRNA_Ecto-sp13_S_contig15316.3998.1 vs. uniprot
Match: D7FZN5_ECTSI (Palmitoyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZN5_ECTSI)

HSP 1 Score: 441 bits (1134), Expect = 7.260e-153
Identity = 207/210 (98.57%), Postives = 210/210 (100.00%), Query Frame = 1
Query:   91 LPSYGRWSFALVAACLCTGCFVSLVFSSFLDPGIIPRRAASGLPDSIPEDVRDQLSYCITCHIVRPPRTKHCKHCNNCVLTFDHHCPWTGNCVGARNYRAFMAFIILVTISSSLVCAMSVVHTVTRTGHVGPMYLTDSVNLPGSRFVSPVLGMWTAMITVLVGALLCFHVYLLAKGQTTNEYLRGEKRRGNVPHRSFGPNCRELWCGTQP 720
            LPSYGRWSFALVAACLCTGCFVSLVFSSFLDPGIIPRRAASGLPDSIPEDVRDQLSYCITCHIVRPPRTKHCKHCNNCVLTFDHHCPWTGNCVGARNYR+FMAFIIL+TISSSLVCAMSVVHTVTRTGHVGPMYLTDSVNLPGSRFVSPVLG+WTAMITVLVGALLCFHVYLLAKGQTTNEYLRGEKRRGNVPHRSFGPNCRELWCGTQP
Sbjct:  226 LPSYGRWSFALVAACLCTGCFVSLVFSSFLDPGIIPRRAASGLPDSIPEDVRDQLSYCITCHIVRPPRTKHCKHCNNCVLTFDHHCPWTGNCVGARNYRSFMAFIILITISSSLVCAMSVVHTVTRTGHVGPMYLTDSVNLPGSRFVSPVLGLWTAMITVLVGALLCFHVYLLAKGQTTNEYLRGEKRRGNVPHRSFGPNCRELWCGTQP 435          
BLAST of mRNA_Ecto-sp13_S_contig15316.3998.1 vs. uniprot
Match: D8LTN2_ECTSI (Palmitoyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTN2_ECTSI)

HSP 1 Score: 250 bits (638), Expect = 1.170e-79
Identity = 131/247 (53.04%), Postives = 169/247 (68.42%), Query Frame = 1
Query:    1 GRIMLGVHYRQLMTTTMLLFLTWLLFFVFI-LPS--YGRWSF-ALVAACLCTGCFVSLVFSSFLDPGIIPRRAAS--GLPDSIPEDVRDQLSYCITCHIVRPPRTKHCKHCNNCVLTFDHHCPWTGNCVGARNYRAFMAFIILVTISSSLVCAMSVVHTVT-RTGHVGPMYLTDSVNLPGSRFVSPVLGMWTAMITVLVGALLCFHVYLLAKGQTTNEYLRGEKRRGNVPHRSFGPNCRELWCGTQP 720
            GRI++G H R L  +  +L  T  LFF FI LP+  YG W+F + V+ CL  GC +SL  ++ +DPGIIPRR  +     D    DV ++ S C+TC + RPPR KHCK CNNCV+ FDHHCP+TGNC+GARNYRAFMAFI +VTIS    CA+SV+H V  R  +VGP+ L +   +PGS+F   +L +WTA++ VLVG LL FH++L+AKGQTTNEYLR E   G+   R F  +C ELWCG +P
Sbjct:   26 GRIVVGSHCRALAFSATILLFTATLFFTFISLPATTYGGWAFFSTVSVCLFVGCIISLASTAMMDPGIIPRRTLALWNSLDPASPDVAERKS-CVTCQLARPPRAKHCKRCNNCVMEFDHHCPFTGNCIGARNYRAFMAFISIVTISEFFACALSVLHIVAPRADNVGPVLLVNWARIPGSQFFPHLLALWTAVVMVLVGGLLSFHIFLVAKGQTTNEYLRREAPSGSRLGRPFLSSCHELWCGARP 271          
BLAST of mRNA_Ecto-sp13_S_contig15316.3998.1 vs. uniprot
Match: A0A835YZ83_9STRA (Palmitoyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ83_9STRA)

HSP 1 Score: 235 bits (599), Expect = 2.950e-73
Identity = 116/242 (47.93%), Postives = 153/242 (63.22%), Query Frame = 1
Query:    1 GRIMLGVHYRQLMTTTMLLFLTWLLFFVFILPSYGRWSFALVAACLCTGCFVSLVFSSFLDPGIIPRRAASGLPDSIPEDVRDQLSYCITCHIVRPPRTKHCKHCNNCVLTFDHHCPWTGNCVGARNYRAFMAFIILVTISSSLVCAMSVVHTVTRTGHVGPMYLTDSVNLPGSRFVSPVLGMWTAMITVLVGALLCFHVYLLAKGQTTNEYLRGEKR--RGNVPHRSFGPNCRELWCGTQP 720
            G++MLGVH  QL  T  L+  TWLLF VF+ P+Y  W    V A +   C V+L  ++  +PGIIP +  S   + +    R +L+YCITCHIVRPPR KHC+HCN CV  FDHHCPW GNC+G RNYR+F+ F+I++         +S +H +TR G+VGP  LT    +PGS +VSP LG+W  ++T +VG LL  H+YLL +GQTTNE+L+GE    RG V  +     C  LWC   P
Sbjct:   61 GKLMLGVHCDQLWVTGSLILGTWLLFLVFVAPNYTGWWCVGVGAAMLVLCLVTLAETAVTEPGIIPPQPRSDAAEGMSASTRGKLNYCITCHIVRPPRAKHCRHCNVCVRRFDHHCPWIGNCIGHRNYRSFLRFLIVLAXXXXXXXXLSAIHALTRLGNVGPEDLTSQSGVPGSEYVSPFLGVWALLVTAIVGGLLLLHMYLLFQGQTTNEFLKGEPVHVRGRVMRK-----CLLLWCERLP 297          
BLAST of mRNA_Ecto-sp13_S_contig15316.3998.1 vs. uniprot
Match: A0A7S3UWP6_HETAK (Palmitoyltransferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWP6_HETAK)

HSP 1 Score: 223 bits (567), Expect = 4.770e-68
Identity = 101/206 (49.03%), Postives = 136/206 (66.02%), Query Frame = 1
Query:  115 FALVAACLCTGCFVSLVFSSFLDPGIIPRRAASGLPDSIPEDVRDQLSYCITCHIVRPPRTKHCKHCNNCVLTFDHHCPWTGNCVGARNYRAFMAFIILVTISSSLVCAMSVVHTVTRTGHVGPMYLT----DSVNLPGSRFVSPVLGMWTAMITVLVGALLCFHVYLLAKGQTTNEYLRGEKRRGNVPHRSFGPNCRELWCGTQP 720
            + L  A L       L+ ++  DPGIIPR   S L +S+P +++++++YC TCHIVRPPRTKHC+HCNNC+ TFDHHCPWTGNC+G RNYR F  F++ +T SS+ V  MS  +       +   Y      D   + G +F++P+L +WT ++T LVGALL FH+ LL +GQTTNEYLRGEK RG++PH +   NC  LWC   P
Sbjct:    2 YLLAGAALMAASVAFLLVTALRDPGIIPRHPPSQLVESMPPEMKEKMNYCPTCHIVRPPRTKHCRHCNNCIQTFDHHCPWTGNCIGRRNYRFFYLFLMSITASSAYVLVMSANYLTRHLTDIDSKYFDAIFKDEWKIKGGQFIAPLLILWTLLVTTLVGALLVFHIILLGRGQTTNEYLRGEKNRGDIPHGNIFTNCGNLWCHDMP 207          
BLAST of mRNA_Ecto-sp13_S_contig15316.3998.1 vs. uniprot
Match: A0A812WJG5_SYMMI (Palmitoyltransferase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WJG5_SYMMI)

HSP 1 Score: 176 bits (445), Expect = 1.030e-49
Identity = 94/220 (42.73%), Postives = 132/220 (60.00%), Query Frame = 1
Query:    1 GRIMLGVHYRQLMTTTMLLFLTWLLFFVFILPSYGRWSFALVAACLCTGCFVSLVFSSFLDPGIIPRRAASGLPDSIPEDVRDQLSYCITCHIVRPPRTKHCKHCNNCVLTFDHHCPWTGNCVGARNYRAFMAFIILVTISSSLVCAMS---VVHTVTRTGHVGP--MYLTDSVNLPGSRFVSPVLGMWTAMITVLVGALLCFHVYLLAKGQTTNEYLRG 645
            GRIM+G H   L+ +  LL +T+ LF + ++P         +   L  G    L+ ++  +PGIIPRR  S L +S+ ED R +L YC TC IVRPPR KHC++C+NCV  FDHHCPWTG C+G RNY  F  FI L T+S++  C+ S   +V       H     MY+ D         V+P++  +T ++ VLVG+LL FH++L+ + QTTNE+LRG
Sbjct:   99 GRIMMGAHSNHLLLSITLLVVTYSLFLLGVVPLLHMPILFYIGVGLAVGTLTFLLLTALTEPGIIPRRPPSKLLESMSEDARQKLQYCHTCRIVRPPRAKHCRYCDNCVEVFDHHCPWTGTCIGVRNYAYFCVFITLATVSAAFACSTSAYLIVQWAEGRNHEPRLLMYIRD--------VVAPLVCAFTLLVFVLVGSLLAFHLFLIGRQQTTNEFLRG 310          
BLAST of mRNA_Ecto-sp13_S_contig15316.3998.1 vs. uniprot
Match: A0A7R9UDC7_9STRA (Palmitoyltransferase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UDC7_9STRA)

HSP 1 Score: 177 bits (448), Expect = 1.750e-49
Identity = 94/223 (42.15%), Postives = 138/223 (61.88%), Query Frame = 1
Query:    1 GRIMLGVHYRQLMTTTMLLFLTWLLFFVFILPSYGRWSFALVAACLCTGCFVSLVFSSFLDPGIIPRRAASGLPDSIPEDVRDQLSYCITCHIVRPPRTKHCKHCNNCVLTFDHHCPWTGNCVGARNYRAFMAFIILVTISSSLVCAMSVVHTVTRTGHVGPMYLTDSVNLPGS----RFVSPVLGMWTAMITVLVGALLCFHVYLLAKGQTTNEYLRGEKRR 657
            GRIMLG    QL  T +L+ +TW +F   I+P        +++  L T   V+L+ ++  DPGI+PRR  S + +S+P  +++++ YC TCHI++P RTKHC+ C+NCV  FDHHCPW GNC+GARNYR F+ FII   ++   V ++S+   ++ TG +      D    PG+    R ++ VL  WT ++T LVGAL  FH  L+  GQTTNEY++  + R
Sbjct:  130 GRIMLGAMAHQLGITLVLMLITWGIFLCLIVPLLRNAVLVVLSFMLFTTQLVALLCTALTDPGILPRRPPSAVVESMPMQMKERMHYCPTCHIIKPHRTKHCRICDNCVQEFDHHCPWVGNCIGARNYRFFLLFIISTVLACVFVLSVSLYAFLSGTGGLIVQVQDD----PGADTVLRVLALVLVFWTFLLTALVGALTFFHCSLMCMGQTTNEYVKAARAR 348          
BLAST of mRNA_Ecto-sp13_S_contig15316.3998.1 vs. uniprot
Match: F0Y087_AURAN (Palmitoyltransferase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y087_AURAN)

HSP 1 Score: 157 bits (396), Expect = 7.160e-43
Identity = 86/219 (39.27%), Postives = 126/219 (57.53%), Query Frame = 1
Query:    1 GRIMLGVHYRQLMTTTMLLFLTWLLFFVFILPSYGRWSFALVAACLCTGCFVSLVFSSFLDPGIIPRRAASGLPDSIPEDVRDQLSYCITCHIVRPPRTKHCKHCNNCVLTFDHHCPWTGNCVGARNYRAFMAFIILVTISSSLVCAMSVVHTVT-RTGHVGPMYLTDSVNLPGSRFVSPVLGMWTAMITVLVGALLCFHVYLLAKGQTTNEYLRGEKR 654
            GR+MLGV   +L+ T +L+  TW   F    P+   +     A  +   CFV L  ++  DPGI+PR   S     +P + + ++++C TC I+RPPR KHC++C+NCV  FDHHCPW G CVGARNYRAF+ F++     +  VC+ +  + V   T H    Y+       G   V+ +   W+A++ + V  L+ FH+YL+   QTTNEYLR E+R
Sbjct:   42 GRLMLGVDCDRLLATALLIATTWAGHFFVTWPNLD-FDERCGAGGIAVLCFVCLAAAATRDPGIVPRLPRSDRLSGLPCETQYRMNWCQTCQILRPPRAKHCRYCDNCVRVFDHHCPWLGTCVGARNYRAFVLFLVWTLAGALYVCSRAARYLVRCSTVHACSAYVDF-----GRPIVAGISVAWSAVVALPVATLIAFHLYLMGHDQTTNEYLRDERR 254          
BLAST of mRNA_Ecto-sp13_S_contig15316.3998.1 vs. uniprot
Match: A0A3P3YIW4_PLABS (Palmitoyltransferase n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YIW4_PLABS)

HSP 1 Score: 133 bits (335), Expect = 2.140e-34
Identity = 86/232 (37.07%), Postives = 123/232 (53.02%), Query Frame = 1
Query:    1 GRIMLGVHYRQLMTTTMLLFLTWLLFFVFILPSYGRWSFALVAACLCTGCFVSLVFSSFLDPGIIPRRAASGLPDSIPEDVRDQLS-----YCITCHIVRPPRTKHCKHCNNCVLTFDHHCPWTGNCVGARNYRAFMAFIILVTISSSLVCAMSVVHTVTRTGHVGPMYLTDSVNLPGSRFVSPVLGMWTAMITVLVGALL---CFHVYLLAKGQTTNEYLRGEKRRGNVPH 672
            GR+++G      + T +LL    +LF +++  S G W+  L  +CL     + LV ++F DPG+IP+  ++G  +  PED +   +     YC TC+I RPPR KHC+ C+NCV+ FDHHC W G CVG RNYR F+ F+   T    L  A+ VV  +T     G     D V    SR  +P +  +       V  LL   C+H ++  KGQTTNE+LR   R    P+
Sbjct:   13 GRVVVGSQPAAAVGTLVLLVAAHVLFALYVAQSVGLWA-VLTCSCLAFVSTIFLVTTAFSDPGVIPKGPSNGSAEP-PEDFQVTAAGPSHKYCETCNIWRPPRAKHCRLCDNCVIRFDHHCGWIGTCVGQRNYRTFLGFLFTTTALLVLDIAVVVVAFLTAVRQSGTGSGVDVVIGTFSR--APAIVSFFIFSCCFVFGLLSMSCYHFWITVKGQTTNEHLREVYRNATNPY 240          
BLAST of mRNA_Ecto-sp13_S_contig15316.3998.1 vs. uniprot
Match: A0A6A5C2S5_NAEFO (Palmitoyltransferase n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5C2S5_NAEFO)

HSP 1 Score: 136 bits (342), Expect = 3.850e-34
Identity = 91/250 (36.40%), Postives = 129/250 (51.60%), Query Frame = 1
Query:    1 GRIMLGVHYRQLMTTTMLLFLTWLLFFVFILPSYGRWSFALVAACLCTG-------CFVSLVFSSFLDPGIIPRR-------AASG---LPDSIPEDVRDQ-----------LSYCITCHIVRPPRTKHCKHCNNCVLTFDHHCPWTGNCVGARNYRAFMAFIILVTISSSLVCAMSVVHTV---TRTGHVGPMYLTDSV-NLPGSRFVSPVLGMWTAMITVLVGALLCFHVYLLAKGQTTNEYLRGEKR 654
            GRI++G   +  + T +L+F+  +++   I+P Y  +        L            + L ++SF DPGIIPRR       A +G   + D  PE  + Q           L YC +C I RPPRT HC+ CNNCV  FDHHCPWTG C+G RNYR+F+ FI   TI+S LV  + + HTV   T   ++    + D V N         VL ++  +  + VG+L  FH YL++ GQTT EY+   K+
Sbjct:  131 GRIIIGPDRKLFILTLILMFIPAIIYAPVIMPHYLLFVHPAAGVILLIVPLIGFLLMLIGLFYTSFTDPGIIPRRKYIDQQFARTGEEKIDDRKPEPPQFQKVHLENGQIVELKYCPSCEIYRPPRTSHCRRCNNCVERFDHHCPWTGTCIGRRNYRSFILFIFSTTITSWLVIFICIAHTVLVWTYYFNINTDTIPDKVANSVRYSIGGLVLIVYIFLTQLFVGSLSVFHAYLISTGQTTYEYVNKAKK 380          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15316.3998.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNK6_9PHAE2.750e-16999.17Palmitoyltransferase n=1 Tax=Ectocarpus sp. CCAP 1... [more]
D7FZN5_ECTSI7.260e-15398.57Palmitoyltransferase n=1 Tax=Ectocarpus siliculosu... [more]
D8LTN2_ECTSI1.170e-7953.04Palmitoyltransferase n=1 Tax=Ectocarpus siliculosu... [more]
A0A835YZ83_9STRA2.950e-7347.93Palmitoyltransferase n=1 Tax=Tribonema minus TaxID... [more]
A0A7S3UWP6_HETAK4.770e-6849.03Palmitoyltransferase n=1 Tax=Heterosigma akashiwo ... [more]
A0A812WJG5_SYMMI1.030e-4942.73Palmitoyltransferase n=1 Tax=Symbiodinium microadr... [more]
A0A7R9UDC7_9STRA1.750e-4942.15Palmitoyltransferase n=1 Tax=Pinguiococcus pyrenoi... [more]
F0Y087_AURAN7.160e-4339.27Palmitoyltransferase n=1 Tax=Aureococcus anophagef... [more]
A0A3P3YIW4_PLABS2.140e-3437.07Palmitoyltransferase n=1 Tax=Plasmodiophora brassi... [more]
A0A6A5C2S5_NAEFO3.850e-3436.40Palmitoyltransferase n=2 Tax=Naegleria TaxID=5761 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15316contigEcto-sp13_S_contig15316:8..4052 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score443.7
Seed ortholog evalue5.3e-122
Seed eggNOG ortholog2880.D7FZN5
Model size720
KEGG koko:K16675,ko:K20030,ko:K20032
KEGG TC9.B.37.1,9.B.37.3
KEGG Pathwayko04391,map04391
Hectar predicted targeting categorysignal peptide
Exons5
EggNOG free text desc.protein-cysteine S-palmitoyltransferase activity
EggNOG OGsCOG5273@1,KOG1311@2759
Ec32 ortholog descriptionZinc finger, DHHC-type, palmitoyltransferase
Ec32 orthologEc-08_001120.1
EC2.3.1.225
Cds size711
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15316.3998.1prot_Ecto-sp13_S_contig15316.3998.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15316 8..4043 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462815.3473563-CDS-Ecto-sp13_S_contig15316:7..2121681462815.3473563-CDS-Ecto-sp13_S_contig15316:7..212Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15316 8..212 -
1681462815.3628924-CDS-Ecto-sp13_S_contig15316:929..10911681462815.3628924-CDS-Ecto-sp13_S_contig15316:929..1091Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15316 930..1091 -
1681462815.3800352-CDS-Ecto-sp13_S_contig15316:1981..21471681462815.3800352-CDS-Ecto-sp13_S_contig15316:1981..2147Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15316 1982..2147 -
1681462815.3907504-CDS-Ecto-sp13_S_contig15316:3319..34171681462815.3907504-CDS-Ecto-sp13_S_contig15316:3319..3417Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15316 3320..3417 -
1681462815.3993738-CDS-Ecto-sp13_S_contig15316:3963..40431681462815.3993738-CDS-Ecto-sp13_S_contig15316:3963..4043Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15316 3964..4043 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462815.4155807-UTR-Ecto-sp13_S_contig15316:4043..40521681462815.4155807-UTR-Ecto-sp13_S_contig15316:4043..4052Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15316 4044..4052 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15316.3998.1

>prot_Ecto-sp13_S_contig15316.3998.1 ID=prot_Ecto-sp13_S_contig15316.3998.1|Name=mRNA_Ecto-sp13_S_contig15316.3998.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=237bp
MLGVHYRQLMTTTMLLFLTWLLFFVFILPSYGRWSFALVAACLCTGCFVS
LVFSSFLDPGIIPRRAASGLPDSIPEDVRDQLSYCITCHIVRPPRTKHCK
HCNNCVLTFDHHCPWTGNCVGARNYRAFMAFIILVTISSSLVCAMSVVHT
VTRTGHVGPMYLTDSVNLPGSRFVSPVLGMWTAMITVLVGALLCFHVYLL
AKGQTTNEYLRGEKRRGNVPHRSFGPNCRELWCGTQP
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mRNA from alignment at Ecto-sp13_S_contig15316:8..4052-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15316.3998.1 ID=mRNA_Ecto-sp13_S_contig15316.3998.1|Name=mRNA_Ecto-sp13_S_contig15316.3998.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4045bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15316:8..4052- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCGAATTATGCTCGGGGTGCACTACCGGCAGCTGATGACGACGACGAT GCTTCTCTTCCTCACCTGGCTCTTGTTCTTCGTTTTCATGTGAGTCCGCC GGGAGGGGAAGTCGAGTTTTCCTTGGCATTGGCGCCGGTCATTGTAGCAG GAAATCGCTGCGGTAGCAATCGCTGTGGTAGCAATCGCTGTGGTAGTCAG TCTGTTTGTCGTCCGGAAAGCAGGCAATGGCTGTGGTAGCAATCGAAGGT AGTCAGTCTGTTTGTCAACGTGGCTTTTGGCCACAGACATGGCCACCGCC GTACTTCAGCATACGTACATTTCATGAGGACGTTTGTGTTGACTAATTTT GAAGAACCCGAACGCGCATGTTAGCTCAAATCCTGCCCGGTGCTAAATAG CGAGGTGGGGCCATTCCCACACGCAAGAATCCCTTCTGTTGCCGACTCAG TGGTTACCGCCGGCCCAGTCCACCGCCCTATGTCGGCTGTGGCCGTCTTG TTAGCGCCACCACTCGCGCTGCTGCTGTGTGGGCCTGGCCTTCACCTCTT CCCTCTTTCCCTCCTACTTGTTTTATTTTGTCTGCCTCTCTCTCGTCCCG CCGCTGGTCCCCCCTCGGCCGCACTACCTTTGCAGCCTGCCCTCGTACGG GCGGTGGAGCTTTGCCCTCGTCGCGGCCTGTCTGTGCACGGGGTGCTTCG TGTCGCTCGTTTTCTCTTCCTTCCTCGACCCTGGTGCGTAATGTAATTCG CTCTTTCCTTTAATTTCTTCCGTAGAAACGACGCTGGAGTAGCTGCAGTT GGGAGCCTTTCGGAACATTTGGTAGGATTTTGTGTGAGGACTCTGTGTTG AGGATAGATCCAAGTCGCAAAATATTGTGATGGAGCCAAATCGTGAATAT TGTATGGGACCGGCGAGATCTACTTCGGATCCAAATCGCAAAATATTGTG ATAGGAATCAAATGGTGAATATTGTTTGGGACCGGCGAGATCTACGTCGA CCGGAGAGATATACGTCGAGGCGTAGTGATAGGGTTCTCCTGTTTATGGG TGACGACACGCACGTACCGCAAGTTGCATGGTGTGAGATACCACACCCCC TGGACCGCCTTTCAAAGCTCGATTATTCTGCAGCAAAACCCGTGGCGGTG CCGTCAATTGTGGCATTGGATCCGTCCCGTCGAGACCTTTCCGAAAATAT TTCATTTGGTACTGGGCATCGTGTATGTCGTGGGTAATCGGGCTTTTAGA ATCCGTTCAAGGGGTGTGGTATCTTGCATCATGCCACCTGCGGCAAGACA CCTCAAGTGTTTGGGTGAGGCGCGCGCATCAAAACCCAAGGGGTATTGTT GTGGACGGGTCTCTTCTGGTTCCCTCCAGTTTGTTTTTCTTGTCGTCATT TGGCTTTCTTCTTTCCGTTGTGTGGCTTGCATAGTTGCCTTCTACCGCCC CCTTTCCTCAAACATGTCCCTGTCGTCTCGGCTCCCCACCCATCGGAGTA CACAGCTTGTGCCTTGCGACCCTTTATGCTTCCATGCTTGTCTCATGTCG CGCTACCCTCGTACTCTCCCTAAGTGGTTCCCTTTGTGGGCTCCCTCTCC GTGTCATCACGGCTTGCTCCAACGTACCATCCTGTCTGCACGCCATCTCC CGTGTACCCCCCTCCCCCCATGGATCATTCCTCCTTCCATTCTTATCTCC ATGTCGCTCTTCCCTCATATTGTACTGTTTCCCCCTACGTGTTTGTCTCT TTGGCCTCCTCCTCCATGTCATCGTGGCTTGGTACGATATTCTCCGCATG CCATCTCCACCCCACGGATCATCCCTCTTTCCATCTCATCTCCATGTCGC CCGCGTACTGCTGTACCCCCACACGTGTTTGCCACACCGTCTCCCCCCCT CCCAGGGATCATCCCCCGGCGAGCGGCTTCCGGCCTGCCCGACTCCATCC CGGAGGACGTGCGAGACCAGCTGAGCTACTGCATCACGTGCCACATCGTC CGCCCGCCGCGGACCAAGCACTGCAAGCACTGCAACAACTGCGTCCTCAC CTTCGACCATCACTGCCCCTGGTAAGAAGGACGATCCATGACGTATTCCA TGACGTCACGCAAGTCACTCCGGACGTGTTTGTCGCCTTAGATGGGGTAC GAGAGCCCTTGGTAGAAAGGGGATTGTACTCACGGAATCGCATGCCTTGT TGGCAGGGCACAGCCCTCGTATAGCTACAAATGCCGGGACCGAGTTTTAT GCCGGGTTTTTGCCGGCCCAGGCTATGGTTGTACGGTTCACAAGGATGAA CCACAAGCTGGTCGTCGTGCTTGGGTTTGCTGTGCCACACCAGGTATTCG ATGTTTGTTGATTGGGCATCTCCTGGCTAACCAATCGTTTCACTTCCGGC AGGCACTACACTTGAAGTGCCTCAAGGGACTTGGTCTTTGCGCGCTCCTA CACAGCATGCACGGCACAAGCACACACACACACACACACACACGCTGGGC TTAAATTAACCCTTTTGCTGTCCTCCGCTCTTTGGATCAGTGGCTTCCTG GGTTCGGGCGAGGGCATTTGTGTAGCTGAGATGTGTGTCCACGTGAAATA ATATGTAAAGAGAGTCGTATTGGCACTCGCATCTAGCGCATTGCGCATTT TTCGGATTTTGGCCCCATTCCGGGGACCTTGATTTTTACCCGCTGGCACT GACGTCTTTTTATGGGTCAGCCGGTTAGCGCGGTCGATGCTTATAATAGA AACACACACACACACGCCTCCTCCACGACGCCCCCTCACGGGGTCCCCGA TCATGGCACTTAGAAACATTTTGCGTTTTTAACCGCACTGAGACTGACGT GTTTTCATTAGTCAGCCGGTTGCCGCGGTCGATGCTAATAAAAGAAAACA CACACACAGTACATAATATACGCTTAGACCCCAAACAATGTCGTCTCCCT ACGTCTCGCAGGACCGGTAACTGCGTGGGTGCCCGCAACTATCGCGCCTT CATGGCCTTCATCATCCTGGTCACCATCAGCTCGTCGCTCGTGTGCGCCA TGAGCGTGGTGCACACGGTCACCCGGACCGGACACGTGGGGCCGATGTAC CTCACCGATTCGGTCAATCTACCGTGAGTCAGTCGCACACAACACCAAAA ATATACTTGCGCACAACGAGAAGCTACCGTGAGAGATAATGCCACAATCG AAGGGGATGAGTTGATTTTTTTAGTTGTTTTTTCTCTTGAAAACAACACA AATGCAACTCTATCCGCAGATGTGTGAGTCGTAAGCGAATCGCATGTACG AAGTTCTTTTTCTTGCAGGTGAAGAGTCCAGCGCAAATAAGCGATAATTT TACAGTGTTCTTTGACCCCTGATACCTGTGTTCCATCTGGCCTCTTTGCT GCTGTTGTCTATCTACTCCGCCTGTCCTGAAACGTTTAGCTTTCAATTCG AGATTTTTTTTGTTTGCTTTTTTTCGAGTCTTGTTTGCATGTTTTTTGTT GCGTGCGCGCGGCACGCCGTCAAATGAAGGGTGTTGGAGTGCACCCGGGC ACTAGTTTCCGCTCTCAACAGACATTGTGCCGATCTTGTCTTTTCGTCAA CCGCGGTCTCACTTTTGTATGTCTTACTAGAGGCTTAGTTTTTAAGGACG ACATTTTGTGCAACTACGAAGTGCCGGAATTTCTGTTGGTCAGCGACGGT CATGTTGGTCAATTTGTGGGTTGTGCTTTGGCACTCTATCTGTGCGTTCA TACCACATGTTCTCATTGTCTGTTCGTATACAGTGTTGCGGAGCGTTGGC GTAGACCCCCCCCCCCCCGTTTCACTTTTTTCGTTGACAGGGGTAGCCGT TTCGTGAGCCCGGTGCTGGGCATGTGGACGGCGATGATCACGGTCCTGGT CGGCGCGCTGCTGTGCTTCCACGTGTACCTGCTGGCGAAGGGCCAGACGA CGAACGAGTACCTTCGGGGGGAGAAACGTAGGGGTAACGTCCCGCACCGG TCGTTCGGGCCCAACTGCCGGGAGCTGTGGTGTGGGACGCAGCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15316:8..4052-

>mRNA_Ecto-sp13_S_contig15316.3998.1 ID=mRNA_Ecto-sp13_S_contig15316.3998.1|Name=mRNA_Ecto-sp13_S_contig15316.3998.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=711bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15316:8..4052- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCGGGGTGCACTACCGGCAGCTGATGACGACGACGATGCTTCTCTT
CCTCACCTGGCTCTTGTTCTTCGTTTTCATCCTGCCCTCGTACGGGCGGT
GGAGCTTTGCCCTCGTCGCGGCCTGTCTGTGCACGGGGTGCTTCGTGTCG
CTCGTTTTCTCTTCCTTCCTCGACCCTGGGATCATCCCCCGGCGAGCGGC
TTCCGGCCTGCCCGACTCCATCCCGGAGGACGTGCGAGACCAGCTGAGCT
ACTGCATCACGTGCCACATCGTCCGCCCGCCGCGGACCAAGCACTGCAAG
CACTGCAACAACTGCGTCCTCACCTTCGACCATCACTGCCCCTGGACCGG
TAACTGCGTGGGTGCCCGCAACTATCGCGCCTTCATGGCCTTCATCATCC
TGGTCACCATCAGCTCGTCGCTCGTGTGCGCCATGAGCGTGGTGCACACG
GTCACCCGGACCGGACACGTGGGGCCGATGTACCTCACCGATTCGGTCAA
TCTACCGGGTAGCCGTTTCGTGAGCCCGGTGCTGGGCATGTGGACGGCGA
TGATCACGGTCCTGGTCGGCGCGCTGCTGTGCTTCCACGTGTACCTGCTG
GCGAAGGGCCAGACGACGAACGAGTACCTTCGGGGGGAGAAACGTAGGGG
TAACGTCCCGCACCGGTCGTTCGGGCCCAACTGCCGGGAGCTGTGGTGTG
GGACGCAGCCG
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