mRNA_Ecto-sp13_S_contig15306.3989.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15306.3989.1
Unique NamemRNA_Ecto-sp13_S_contig15306.3989.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15306.3989.1 vs. uniprot
Match: D7FQ30_ECTSI (Dynein light chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ30_ECTSI)

HSP 1 Score: 216 bits (549), Expect = 4.530e-69
Identity = 113/145 (77.93%), Postives = 119/145 (82.07%), Query Frame = 2
Query:  173 MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWVVMSVFRKDSSCCIDSI------P*TRPEQCLSGVFQCRGKILTKKTSIFFP 589
            MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWVVMSV R+  SC + SI      P   P++   G+   R KI  KK+   FP
Sbjct:    1 MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWVVMSVCRR--SCLVASIWYPLDAPGAMPQR---GISVPRKKIHEKKSKYIFP 140          
BLAST of mRNA_Ecto-sp13_S_contig15306.3989.1 vs. uniprot
Match: A0A6H5JF01_9PHAE (Dynein light chain n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF01_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 3.450e-63
Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 2
Query:  173 MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWVVMS 463
            MSNKHQHIFAEDMSDEMC FALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWV+MS
Sbjct:    1 MSNKHQHIFAEDMSDEMCHFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWVLMS 97          
BLAST of mRNA_Ecto-sp13_S_contig15306.3989.1 vs. uniprot
Match: A0A836CC04_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC04_9STRA)

HSP 1 Score: 168 bits (425), Expect = 6.940e-51
Identity = 76/92 (82.61%), Postives = 87/92 (94.57%), Query Frame = 2
Query:  173 MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 448
            M+NKHQHIFAEDM+D+MCQFAL+TS+EAF LTI KGQVFT IAS IR+ FEK+YGRGWNVVVGR+FGAYVTHEIKTYMYFTV+PGVYVL+W+
Sbjct:    1 MANKHQHIFAEDMTDDMCQFALKTSEEAFHLTINKGQVFTAIASYIRRTFEKTYGRGWNVVVGRAFGAYVTHEIKTYMYFTVIPGVYVLIWK 92          
BLAST of mRNA_Ecto-sp13_S_contig15306.3989.1 vs. uniprot
Match: A0A482S6R4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S6R4_9ARCH)

HSP 1 Score: 117 bits (293), Expect = 2.010e-30
Identity = 53/85 (62.35%), Postives = 68/85 (80.00%), Query Frame = 2
Query:  194 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 448
            +FAEDMS+E  + A++ +++AF LTI  G V +TIA  IRK F++ + RGWN +VGRSFGAYVTHEIKTY+YFTV PG YVLLW+
Sbjct:   44 VFAEDMSEEWSKDAIKAARDAFALTIASGDVHSTIADFIRKKFDRDHERGWNCIVGRSFGAYVTHEIKTYIYFTVQPGTYVLLWK 128          
BLAST of mRNA_Ecto-sp13_S_contig15306.3989.1 vs. uniprot
Match: A0A7S3H299_9STRA (Dynein light chain n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H299_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.600e-29
Identity = 59/120 (49.17%), Postives = 80/120 (66.67%), Query Frame = 2
Query:   89 EANIFALDGNESVDQKGSCRGVRQTATIMSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 448
            E+N    D +E+  QKG  +G  + A     ++  +FAEDMS+E  + A + +++AF +TI+ G   +TIA  IRK F+  +  GWN +VGRSFGAYVTHEIKTY YF+V PG YVLLWR
Sbjct:    2 ESNSAMADQDEA--QKGKFKGNNKNAL---KEYLQVFAEDMSEEWARDAQKIARDAFAITISSGDAHSTIADFIRKKFDVGHMAGWNCIVGRSFGAYVTHEIKTYTYFSVQPGTYVLLWR 116          
BLAST of mRNA_Ecto-sp13_S_contig15306.3989.1 vs. uniprot
Match: A0A7S4E7C9_9STRA (Dynein light chain n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E7C9_9STRA)

HSP 1 Score: 114 bits (284), Expect = 2.940e-29
Identity = 53/92 (57.61%), Postives = 69/92 (75.00%), Query Frame = 2
Query:  173 MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 448
            M+   Q +FAEDMS+E   F LE + +AF     +G+V++ +A+ IR A EK YG+GWNVVVG+SFGA+VTHEIKTY Y +VVPGV VL+WR
Sbjct:    1 MAKATQQVFAEDMSEEKVDFCLEIATDAFNQASFQGKVYSYVANFIRAALEKQYGKGWNVVVGKSFGAFVTHEIKTYFYGSVVPGVCVLIWR 92          
BLAST of mRNA_Ecto-sp13_S_contig15306.3989.1 vs. uniprot
Match: A0A485KYL8_9STRA (Dynein light chain n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485KYL8_9STRA)

HSP 1 Score: 112 bits (281), Expect = 5.210e-29
Identity = 50/85 (58.82%), Postives = 66/85 (77.65%), Query Frame = 2
Query:  194 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 448
            +FAEDM+D M +  + T+++AFQL +  G+ F+TIA  +R+  EK YGRGWN +VG SFGAYVTHEIKTY+YF+V  GV VL+WR
Sbjct:   13 VFAEDMTDVMLEKVVATAKDAFQLQVASGKTFSTIAEFVRRNMEKEYGRGWNCIVGLSFGAYVTHEIKTYVYFSVASGVSVLVWR 97          
BLAST of mRNA_Ecto-sp13_S_contig15306.3989.1 vs. uniprot
Match: A0A0P1AY91_PLAHL (Dynein light chain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AY91_PLAHL)

HSP 1 Score: 111 bits (278), Expect = 1.520e-28
Identity = 51/85 (60.00%), Postives = 65/85 (76.47%), Query Frame = 2
Query:  194 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 448
            +FAEDM+D M    L T+++AFQL +T  + F+TIA  +R+  EK YGRGWN VVG SFGAYVTHEIKTY+YF+V  GV VL+W+
Sbjct:   14 VFAEDMTDAMLDKVLSTAKDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAIGVSVLVWK 98          
BLAST of mRNA_Ecto-sp13_S_contig15306.3989.1 vs. uniprot
Match: A0A225VFG7_9STRA (Dynein light chain n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VFG7_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.880e-27
Identity = 60/122 (49.18%), Postives = 82/122 (67.21%), Query Frame = 2
Query:  194 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR-WVVMSVFRKDSSCCIDSIP*TRPEQ-----CLSGVF 541
            +FAEDM+D M + AL T+++AFQL +T  + F+TIA  +R+  EK YGRGWN VVG SFGAYVTHEIKTY+YF+V  GV VL+W+ ++ + V    SS  +D++    P+      CL   F
Sbjct:   14 VFAEDMTDVMLEKALSTARDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAAGVSVLVWKTYLQLPVGASGSS--LDALATVVPDSKHKLLCLPSAF 133          
BLAST of mRNA_Ecto-sp13_S_contig15306.3989.1 vs. uniprot
Match: H3HCG0_PHYRM (Dynein light chain n=21 Tax=Oomycota TaxID=4762 RepID=H3HCG0_PHYRM)

HSP 1 Score: 108 bits (269), Expect = 3.070e-27
Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = 2
Query:  194 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVL 439
            +FAEDM+D M + AL T+++AFQL +T  + F+TIA  +R+  EK YGRGWN VVG SFGAYVTHEIKTY+YF+V  GV VL
Sbjct:   14 VFAEDMTDAMLEKALGTARDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAAGVSVL 95          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15306.3989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ30_ECTSI4.530e-6977.93Dynein light chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JF01_9PHAE3.450e-6397.94Dynein light chain n=1 Tax=Ectocarpus sp. CCAP 131... [more]
A0A836CC04_9STRA6.940e-5182.61Dynein light chain n=1 Tax=Tribonema minus TaxID=3... [more]
A0A482S6R4_9ARCH2.010e-3062.35Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S3H299_9STRA1.600e-2949.17Dynein light chain n=1 Tax=Spumella elongata TaxID... [more]
A0A7S4E7C9_9STRA2.940e-2957.61Dynein light chain n=1 Tax=Pelagomonas calceolata ... [more]
A0A485KYL8_9STRA5.210e-2958.82Dynein light chain n=8 Tax=Saprolegniaceae TaxID=4... [more]
A0A0P1AY91_PLAHL1.520e-2860.00Dynein light chain n=1 Tax=Plasmopara halstedii Ta... [more]
A0A225VFG7_9STRA1.880e-2749.18Dynein light chain n=1 Tax=Phytophthora megakarya ... [more]
H3HCG0_PHYRM3.070e-2762.20Dynein light chain n=21 Tax=Oomycota TaxID=4762 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15306contigEcto-sp13_S_contig15306:180..1328 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score210.3
Seed ortholog evalue4.6e-52
Seed eggNOG ortholog2880.D7FQ30
Model size591
KEGG koko:K10418
KEGG Pathwayko04962,map04962
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.positive regulation of ATP-dependent microtubule motor activity, plus-end-directed
EggNOG OGsKOG3430@1,KOG3430@2759
Ec32 ortholog descriptionDynein light chain
Ec32 orthologEc-01_007670.1
Cds size336
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462814.7280843-UTR-Ecto-sp13_S_contig15306:179..3511681462814.7280843-UTR-Ecto-sp13_S_contig15306:179..351Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15306 180..351 +
1681462814.7613533-UTR-Ecto-sp13_S_contig15306:1245..13281681462814.7613533-UTR-Ecto-sp13_S_contig15306:1245..1328Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15306 1246..1328 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462814.7399404-CDS-Ecto-sp13_S_contig15306:351..4621681462814.7399404-CDS-Ecto-sp13_S_contig15306:351..462Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15306 352..462 +
1681462814.7503119-CDS-Ecto-sp13_S_contig15306:1020..12451681462814.7503119-CDS-Ecto-sp13_S_contig15306:1020..1245Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15306 1021..1245 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15306.3989.1prot_Ecto-sp13_S_contig15306.3989.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15306 352..1245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15306.3989.1

>prot_Ecto-sp13_S_contig15306.3989.1 ID=prot_Ecto-sp13_S_contig15306.3989.1|Name=mRNA_Ecto-sp13_S_contig15306.3989.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=112bp
MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAF
EKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWVVMSVFR
KDSSCCIDSIP*
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mRNA from alignment at Ecto-sp13_S_contig15306:180..1328+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15306.3989.1 ID=mRNA_Ecto-sp13_S_contig15306.3989.1|Name=mRNA_Ecto-sp13_S_contig15306.3989.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1149bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15306:180..1328+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTTGCGTCTCACAGACTTAGTCTACAGCCTGCTCTACAATTCGAAGTG GTTAGGACCACGCCGTGTGGACGAGCAACATCATCAACGAAGCCAACATC TTTGCATTAGACGGCAACGAGTCGGTCGATCAAAAGGGGAGCTGCCGTGG GGTTCGGCAGACAGCTACCATCATGTCGAATAAACACCAACATATTTTTG CGGAAGACATGTCGGATGAGATGTGCCAGTTCGCCTTGGAAACCAGCCAA GAAGCCTTCCAGTTGACGATCACGAAAGGCCAGGTGGGACGCGAGGAATG CACACGACGATACTTTTGATCATTTACTCCTAAATTATGGACCGGTAGTT GAACACGGCCAACTACATAGATTTGTGACTGCTACACCGGTTTGACTCAC CGCCGCACGGCAAGTACATGAAGTTCATCCGAACCGAATCGCAGTATTCC GTTGCGGCTGGTGTATTCGTCACACTGTAACCGCCATGTGTGGGTCATAT GTATACGGGAGAGAAACCAGAGCCACACGGAGGAAAATGGCAACAGCTTT TTAGTCTAAACTTATTTGCAATATAGCGGAACGTTTAGAAATTTGGAATT CTGAGGACTACTGGAGCGGACACGTCTTCGAGGACGGTCCCAAACGTTGG GGATATCGGGATCGCATAGTCTAGTCGAACCGGTTTACGTAGCCAACGCC CAAGGAATAACTTGAGCGCAAGCAATCATGGCTTATAAACTTGCCTTGTC TTCGTTATTTCTCCATGACTACCGGCGGATTCTCAATGATCACCGGGTGA TCATCCATTGACTACGCGACGACGACGACGCGACGAGCAAGGTGTTCACA ACGATTGCTTCGTGCATTCGCAAAGCGTTCGAGAAGTCGTACGGCCGAGG CTGGAACGTTGTTGTGGGGAGAAGTTTTGGGGCCTACGTGACCCACGAGA TCAAGACGTACATGTACTTTACTGTTGTTCCGGGGGTCTATGTGCTGCTG TGGAGGTGGGTCGTGATGTCCGTATTCCGGAAGGATTCGTCTTGTTGCAT CGATAGTATCCCCTAGACGCGCCCGGAGCAATGCCTCAGCGGGGTATTTC AGTGCCGAGGAAAAATATTAACGAAAAAAACGAGTATATTTTTCCCTGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15306:180..1328+

>mRNA_Ecto-sp13_S_contig15306.3989.1 ID=mRNA_Ecto-sp13_S_contig15306.3989.1|Name=mRNA_Ecto-sp13_S_contig15306.3989.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=336bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15306:180..1328+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGAATAAACACCAACATATTTTTGCGGAAGACATGTCGGATGAGAT
GTGCCAGTTCGCCTTGGAAACCAGCCAAGAAGCCTTCCAGTTGACGATCA
CGAAAGGCCAGGTGTTCACAACGATTGCTTCGTGCATTCGCAAAGCGTTC
GAGAAGTCGTACGGCCGAGGCTGGAACGTTGTTGTGGGGAGAAGTTTTGG
GGCCTACGTGACCCACGAGATCAAGACGTACATGTACTTTACTGTTGTTC
CGGGGGTCTATGTGCTGCTGTGGAGGTGGGTCGTGATGTCCGTATTCCGG
AAGGATTCGTCTTGTTGCATCGATAGTATCCCCTAG
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