mRNA_Ecto-sp13_S_contig15306.3989.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig15306.3989.1 vs. uniprot
Match: D7FQ30_ECTSI (Dynein light chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ30_ECTSI) HSP 1 Score: 216 bits (549), Expect = 4.530e-69 Identity = 113/145 (77.93%), Postives = 119/145 (82.07%), Query Frame = 2
Query: 173 MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWVVMSVFRKDSSCCIDSI------P*TRPEQCLSGVFQCRGKILTKKTSIFFP 589
MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWVVMSV R+ SC + SI P P++ G+ R KI KK+ FP
Sbjct: 1 MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWVVMSVCRR--SCLVASIWYPLDAPGAMPQR---GISVPRKKIHEKKSKYIFP 140
BLAST of mRNA_Ecto-sp13_S_contig15306.3989.1 vs. uniprot
Match: A0A6H5JF01_9PHAE (Dynein light chain n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF01_9PHAE) HSP 1 Score: 199 bits (507), Expect = 3.450e-63 Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 2
Query: 173 MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWVVMS 463
MSNKHQHIFAEDMSDEMC FALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWV+MS
Sbjct: 1 MSNKHQHIFAEDMSDEMCHFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWVLMS 97
BLAST of mRNA_Ecto-sp13_S_contig15306.3989.1 vs. uniprot
Match: A0A836CC04_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC04_9STRA) HSP 1 Score: 168 bits (425), Expect = 6.940e-51 Identity = 76/92 (82.61%), Postives = 87/92 (94.57%), Query Frame = 2
Query: 173 MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 448
M+NKHQHIFAEDM+D+MCQFAL+TS+EAF LTI KGQVFT IAS IR+ FEK+YGRGWNVVVGR+FGAYVTHEIKTYMYFTV+PGVYVL+W+
Sbjct: 1 MANKHQHIFAEDMTDDMCQFALKTSEEAFHLTINKGQVFTAIASYIRRTFEKTYGRGWNVVVGRAFGAYVTHEIKTYMYFTVIPGVYVLIWK 92
BLAST of mRNA_Ecto-sp13_S_contig15306.3989.1 vs. uniprot
Match: A0A482S6R4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S6R4_9ARCH) HSP 1 Score: 117 bits (293), Expect = 2.010e-30 Identity = 53/85 (62.35%), Postives = 68/85 (80.00%), Query Frame = 2
Query: 194 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 448
+FAEDMS+E + A++ +++AF LTI G V +TIA IRK F++ + RGWN +VGRSFGAYVTHEIKTY+YFTV PG YVLLW+
Sbjct: 44 VFAEDMSEEWSKDAIKAARDAFALTIASGDVHSTIADFIRKKFDRDHERGWNCIVGRSFGAYVTHEIKTYIYFTVQPGTYVLLWK 128
BLAST of mRNA_Ecto-sp13_S_contig15306.3989.1 vs. uniprot
Match: A0A7S3H299_9STRA (Dynein light chain n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H299_9STRA) HSP 1 Score: 114 bits (286), Expect = 1.600e-29 Identity = 59/120 (49.17%), Postives = 80/120 (66.67%), Query Frame = 2
Query: 89 EANIFALDGNESVDQKGSCRGVRQTATIMSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 448
E+N D +E+ QKG +G + A ++ +FAEDMS+E + A + +++AF +TI+ G +TIA IRK F+ + GWN +VGRSFGAYVTHEIKTY YF+V PG YVLLWR
Sbjct: 2 ESNSAMADQDEA--QKGKFKGNNKNAL---KEYLQVFAEDMSEEWARDAQKIARDAFAITISSGDAHSTIADFIRKKFDVGHMAGWNCIVGRSFGAYVTHEIKTYTYFSVQPGTYVLLWR 116
BLAST of mRNA_Ecto-sp13_S_contig15306.3989.1 vs. uniprot
Match: A0A7S4E7C9_9STRA (Dynein light chain n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E7C9_9STRA) HSP 1 Score: 114 bits (284), Expect = 2.940e-29 Identity = 53/92 (57.61%), Postives = 69/92 (75.00%), Query Frame = 2
Query: 173 MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 448
M+ Q +FAEDMS+E F LE + +AF +G+V++ +A+ IR A EK YG+GWNVVVG+SFGA+VTHEIKTY Y +VVPGV VL+WR
Sbjct: 1 MAKATQQVFAEDMSEEKVDFCLEIATDAFNQASFQGKVYSYVANFIRAALEKQYGKGWNVVVGKSFGAFVTHEIKTYFYGSVVPGVCVLIWR 92
BLAST of mRNA_Ecto-sp13_S_contig15306.3989.1 vs. uniprot
Match: A0A485KYL8_9STRA (Dynein light chain n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485KYL8_9STRA) HSP 1 Score: 112 bits (281), Expect = 5.210e-29 Identity = 50/85 (58.82%), Postives = 66/85 (77.65%), Query Frame = 2
Query: 194 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 448
+FAEDM+D M + + T+++AFQL + G+ F+TIA +R+ EK YGRGWN +VG SFGAYVTHEIKTY+YF+V GV VL+WR
Sbjct: 13 VFAEDMTDVMLEKVVATAKDAFQLQVASGKTFSTIAEFVRRNMEKEYGRGWNCIVGLSFGAYVTHEIKTYVYFSVASGVSVLVWR 97
BLAST of mRNA_Ecto-sp13_S_contig15306.3989.1 vs. uniprot
Match: A0A0P1AY91_PLAHL (Dynein light chain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AY91_PLAHL) HSP 1 Score: 111 bits (278), Expect = 1.520e-28 Identity = 51/85 (60.00%), Postives = 65/85 (76.47%), Query Frame = 2
Query: 194 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 448
+FAEDM+D M L T+++AFQL +T + F+TIA +R+ EK YGRGWN VVG SFGAYVTHEIKTY+YF+V GV VL+W+
Sbjct: 14 VFAEDMTDAMLDKVLSTAKDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAIGVSVLVWK 98
BLAST of mRNA_Ecto-sp13_S_contig15306.3989.1 vs. uniprot
Match: A0A225VFG7_9STRA (Dynein light chain n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VFG7_9STRA) HSP 1 Score: 115 bits (289), Expect = 1.880e-27 Identity = 60/122 (49.18%), Postives = 82/122 (67.21%), Query Frame = 2
Query: 194 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR-WVVMSVFRKDSSCCIDSIP*TRPEQ-----CLSGVF 541
+FAEDM+D M + AL T+++AFQL +T + F+TIA +R+ EK YGRGWN VVG SFGAYVTHEIKTY+YF+V GV VL+W+ ++ + V SS +D++ P+ CL F
Sbjct: 14 VFAEDMTDVMLEKALSTARDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAAGVSVLVWKTYLQLPVGASGSS--LDALATVVPDSKHKLLCLPSAF 133
BLAST of mRNA_Ecto-sp13_S_contig15306.3989.1 vs. uniprot
Match: H3HCG0_PHYRM (Dynein light chain n=21 Tax=Oomycota TaxID=4762 RepID=H3HCG0_PHYRM) HSP 1 Score: 108 bits (269), Expect = 3.070e-27 Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = 2
Query: 194 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVL 439
+FAEDM+D M + AL T+++AFQL +T + F+TIA +R+ EK YGRGWN VVG SFGAYVTHEIKTY+YF+V GV VL
Sbjct: 14 VFAEDMTDAMLEKALGTARDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAAGVSVL 95 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15306.3989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig15306.3989.1 >prot_Ecto-sp13_S_contig15306.3989.1 ID=prot_Ecto-sp13_S_contig15306.3989.1|Name=mRNA_Ecto-sp13_S_contig15306.3989.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=112bp MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFback to top mRNA from alignment at Ecto-sp13_S_contig15306:180..1328+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig15306.3989.1 ID=mRNA_Ecto-sp13_S_contig15306.3989.1|Name=mRNA_Ecto-sp13_S_contig15306.3989.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1149bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15306:180..1328+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15306:180..1328+ >mRNA_Ecto-sp13_S_contig15306.3989.1 ID=mRNA_Ecto-sp13_S_contig15306.3989.1|Name=mRNA_Ecto-sp13_S_contig15306.3989.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=336bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15306:180..1328+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |