mRNA_Ecto-sp13_S_contig15286.3973.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15286.3973.1
Unique NamemRNA_Ecto-sp13_S_contig15286.3973.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15286.3973.1 vs. uniprot
Match: D8LTW0_ECTSI (cGMP-dependent protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTW0_ECTSI)

HSP 1 Score: 514 bits (1325), Expect = 2.320e-181
Identity = 251/263 (95.44%), Postives = 255/263 (96.96%), Query Frame = 1
Query:    1 SLSVASFFCGCVVLPLQYLHQMSVAYRDLKPENLLLGQDGYLKVIDFGFAKRIPFKKDNTVQTKSFTLCGTPDYLAPELVLSRGHDKAVDYWALGCFLYELLCGRTPFTDPRQAEIFKKAIRSERFLAFPAGFPATAQDLIRRLLTPNATYRLGNLSGGIQDIMSHPMFNEVGFDWRELYAKRMAPPHKPKNPASSTLTVKARHQRFLCPVLEPCLRRQTLTLRTFSRFPDVRTALDTSNFEAVSEEDKVLAYTGPQKLFEGF 789
            SLSVASFFCGCVVLPLQYLHQMSVAYRDLKPENLLLGQDGYLKVIDFGFAKRIPFKKD T+QTKSFTLCGTPDYLAPELVLSRGHDKAVDYWALGCFLYELLCGRTPFTDPRQAEIFKKAIRSERFLAFPAGFPATAQDLIRRLLTPNATYRLGNLSGGIQDIMSHPMFNEV F+WRELYAKRM PPHKPKNPASSTLTVKARHQRFL PVLEPC RR TLT+RTF  FP+VRTALDTSNFEAVSEEDKVLAYTGPQKLFEGF
Sbjct:  186 SLSVASFFCGCVVLPLQYLHQMSVAYRDLKPENLLLGQDGYLKVIDFGFAKRIPFKKDTTLQTKSFTLCGTPDYLAPELVLSRGHDKAVDYWALGCFLYELLCGRTPFTDPRQAEIFKKAIRSERFLAFPAGFPATAQDLIRRLLTPNATYRLGNLSGGIQDIMSHPMFNEVDFNWRELYAKRMVPPHKPKNPASSTLTVKARHQRFLRPVLEPCFRRLTLTVRTFRGFPEVRTALDTSNFEAVSEEDKVLAYTGPQKLFEGF 448          
BLAST of mRNA_Ecto-sp13_S_contig15286.3973.1 vs. uniprot
Match: A0A6H5JZB9_9PHAE (cGMP-dependent protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZB9_9PHAE)

HSP 1 Score: 441 bits (1133), Expect = 1.600e-145
Identity = 223/263 (84.79%), Postives = 223/263 (84.79%), Query Frame = 1
Query:    1 SLSVASFFCGCVVLPLQYLHQMSVAYRDLKPENLLLGQDGYLKVIDFGFAKRIPFKKDNTVQTKSFTLCGTPDYLAPELVLSRGHDKAVDYWALGCFLYELLCGRTPFTDPRQAEIFKKAIRSERFLAFPAGFPATAQDLIRRLLTPNATYRLGNLSGGIQDIMSHPMFNEVGFDWRELYAKRMAPPHKPKNPASSTLTVKARHQRFLCPVLEPCLRRQTLTLRTFSRFPDVRTALDTSNFEAVSEEDKVLAYTGPQKLFEGF 789
            SLSVASFFCGCVVLPLQYLHQMSVAYRDLKPENLLLGQDGYLKVIDFGFAKRIPFKKDNTVQTKSFTLCGTPDYLAPELVLSRGHDKAVDYWALGCFLYELLCGRTPFTDPRQAEIFKKAIRSERFLAFPAGFPATAQDLIRRLLTPNATYRLGNLSGGIQDIMSHPMFNEVGFDWRELYAKRMAPPHKPK                                        VRTALDTSNFEAVSEEDKVLAYTGPQKLFEGF
Sbjct:  753 SLSVASFFCGCVVLPLQYLHQMSVAYRDLKPENLLLGQDGYLKVIDFGFAKRIPFKKDNTVQTKSFTLCGTPDYLAPELVLSRGHDKAVDYWALGCFLYELLCGRTPFTDPRQAEIFKKAIRSERFLAFPAGFPATAQDLIRRLLTPNATYRLGNLSGGIQDIMSHPMFNEVGFDWRELYAKRMAPPHKPK----------------------------------------VRTALDTSNFEAVSEEDKVLAYTGPQKLFEGF 975          
BLAST of mRNA_Ecto-sp13_S_contig15286.3973.1 vs. uniprot
Match: A0A835Z7Z1_9STRA (cGMP-dependent protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7Z1_9STRA)

HSP 1 Score: 317 bits (812), Expect = 1.760e-100
Identity = 155/259 (59.85%), Postives = 188/259 (72.59%), Query Frame = 1
Query:   13 ASFFCGCVVLPLQYLHQMSVAYRDLKPENLLLGQDGYLKVIDFGFAKRIPFKKDNTVQTKSFTLCGTPDYLAPELVLSRGHDKAVDYWALGCFLYELLCGRTPFTDPRQAEIFKKAIRSERFLAFPAGFPATAQDLIRRLLTPNATYRLGNLSGGIQDIMSHPMFNEVGFDWRELYAKRMAPPHKPKNPASSTLTVKARHQRFLCPVLEPCLRRQTLTLRTFSRFPDVRTALDTSNFEAVSEEDKVLAYTGPQKLFEGF 789
            A F+ G VVL LQYLH+MSVAYRDLKPENLL+ QDGY+K+IDFGFAKRIPFKK  T+QTKSFTLCGTPDYLAPELVLSRGHDK+VDYWALGCF+YELL GRTPFTDPRQAEIFKKAIRS+RFL+FP GF   A+DL+R+LLTP+  +RLGNL+ G++DI+ HP F +  F+W +L+ K+M PP++P                                         V  A DTS+F  ++++ +V+ YTGPQKLFEGF
Sbjct:  490 ARFYGGSVVLCLQYLHKMSVAYRDLKPENLLVAQDGYIKMIDFGFAKRIPFKKGATLQTKSFTLCGTPDYLAPELVLSRGHDKSVDYWALGCFIYELLVGRTPFTDPRQAEIFKKAIRSDRFLSFPIGFDRDAEDLVRKLLTPSPAFRLGNLNNGVRDILEHPWFTKNNFNWDDLFNKKMEPPYRPA----------------------------------------VSNAQDTSHFATINDDVRVIPYTGPQKLFEGF 708          
BLAST of mRNA_Ecto-sp13_S_contig15286.3973.1 vs. uniprot
Match: A0A835YV03_9STRA (cGMP-dependent protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV03_9STRA)

HSP 1 Score: 314 bits (804), Expect = 8.950e-99
Identity = 160/261 (61.30%), Postives = 186/261 (71.26%), Query Frame = 1
Query:    7 SVASFFCGCVVLPLQYLHQMSVAYRDLKPENLLLGQDGYLKVIDFGFAKRIPFKKDNTVQTKSFTLCGTPDYLAPELVLSRGHDKAVDYWALGCFLYELLCGRTPFTDPRQAEIFKKAIRSERFLAFPAGFPATAQDLIRRLLTPNATYRLGNLSGGIQDIMSHPMFNEVGFDWRELYAKRMAPPHKPKNPASSTLTVKARHQRFLCPVLEPCLRRQTLTLRTFSRFPDVRTALDTSNFEAVSEEDKVLAYTGPQKLFEGF 789
            + A F+ G VVL LQYLH+M+VAYRDLKPENLL+ QDGYLK+IDFGFAKRIPFKK  T+QTKSFTLCGTPDYLAPELVLSRGHDK+VDYWALGCF+YELL GRTPFTDPRQAEIFKKAIRS+RFLAFP GF   A+DLIR+LLTP+ T+RLGNL+GG++DIM HP F+  GF +  LY K+MA P+ P                                         V + LDT +F A ++   V  YTGPQKLF+GF
Sbjct:  540 ATARFYGGSVVLCLQYLHKMNVAYRDLKPENLLVAQDGYLKMIDFGFAKRIPFKKGATMQTKSFTLCGTPDYLAPELVLSRGHDKSVDYWALGCFIYELLLGRTPFTDPRQAEIFKKAIRSDRFLAFPIGFDPQAEDLIRKLLTPSPTFRLGNLNGGVKDIMDHPWFSSNGFAFDNLYNKKMATPYTPA----------------------------------------VSSPLDTRHFAASADNVPVTPYTGPQKLFDGF 760          
BLAST of mRNA_Ecto-sp13_S_contig15286.3973.1 vs. uniprot
Match: A0A7S2CPB2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CPB2_9STRA)

HSP 1 Score: 253 bits (645), Expect = 1.930e-79
Identity = 129/262 (49.24%), Postives = 157/262 (59.92%), Query Frame = 1
Query:    7 SVASFFCGCVVLPLQYLHQMSVAYRDLKPENLLLGQDGYLKVIDFGFAKRIPFKKDNTVQTKSFTLCGTPDYLAPELVLSRGHDKAVDYWALGCFLYELLCGRTPFTDPRQAEIFKKAIRSERFLAFPAGFPATAQDLIRRLLTPNATYRLGNLSGGIQDIMSHPMFNEV-GFDWRELYAKRMAPPHKPKNPASSTLTVKARHQRFLCPVLEPCLRRQTLTLRTFSRFPDVRTALDTSNFEAVSEEDKVLAYTGPQKLFEGF 789
            S A F+ GCV+   QY+H   VAYRDLKPENLL+   G+ K+IDFGFAKRIPF KD  V  KSFT+CGTP+YL+PEL+ S GHDK+VDYWALGC +YELL G+TPF D  Q EIF+K   S++ LAFP G   +A DLIRRLLTPN  +RLGNLSG + DIM+H  F E   F W +L  K++ PP+                                         P +R  LDTSNF+  +EED V  + G Q  F  F
Sbjct:  142 SAAMFYAGCVISAFQYVHDKGVAYRDLKPENLLIDSAGFCKIIDFGFAKRIPFMKDGKVCAKSFTICGTPEYLSPELIQSSGHDKSVDYWALGCLVYELLVGQTPFQDDNQREIFRKITNSKKHLAFPKGMNPSAVDLIRRLLTPNPAFRLGNLSGAVDDIMNHAWFGESESFAWEKLNMKQLTPPY----------------------------------------VPIIRDPLDTSNFDPYAEEDHVPRFNGSQAAFASF 363          
BLAST of mRNA_Ecto-sp13_S_contig15286.3973.1 vs. uniprot
Match: A0A7S3XNP9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNP9_HETAK)

HSP 1 Score: 245 bits (625), Expect = 1.620e-76
Identity = 114/188 (60.64%), Postives = 143/188 (76.06%), Query Frame = 1
Query:    7 SVASFFCGCVVLPLQYLHQMSVAYRDLKPENLLLGQDGYLKVIDFGFAKRIPFKKDNTVQTKSFTLCGTPDYLAPELVLSRGHDKAVDYWALGCFLYELLCGRTPFTDPRQAEIFKKAIRSERFLAFPAGFPATAQDLIRRLLTPNATYRLGNLSGGIQDIMSHPMFNEVGFDWRELYAKRMAPPHKP 570
            S A F+  CVVL L+Y+H + VAYRDLKPENLLL   G+LK+IDFGFAK IPFKK N +QTKSFTLCGTPDYLAPELV S+GHDK+VDYWALGC +YEL+CG+TPF D  Q E+FKK + S++ L  P GF + A DL+++LL PN ++RLGNL+GG +DIM+H  F+    DW  +  K +  P+ P
Sbjct:  138 STARFYAACVVLCLEYVHGLGVAYRDLKPENLLLDNQGFLKMIDFGFAKYIPFKKGNQIQTKSFTLCGTPDYLAPELVRSKGHDKSVDYWALGCLVYELICGQTPFQDNYQPEVFKKIVNSKKSLHIPRGFDSDAADLVKKLLAPNPSFRLGNLNGGARDIMNHAWFDGKT-DWDGILGKTVQAPYVP 324          
BLAST of mRNA_Ecto-sp13_S_contig15286.3973.1 vs. uniprot
Match: A0A7S2R9B3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9B3_9STRA)

HSP 1 Score: 238 bits (606), Expect = 1.250e-74
Identity = 117/260 (45.00%), Postives = 151/260 (58.08%), Query Frame = 1
Query:   10 VASFFCGCVVLPLQYLHQMSVAYRDLKPENLLLGQDGYLKVIDFGFAKRIPFKKDNTVQTKSFTLCGTPDYLAPELVLSRGHDKAVDYWALGCFLYELLCGRTPFTDPRQAEIFKKAIRSERFLAFPAGFPATAQDLIRRLLTPNATYRLGNLSGGIQDIMSHPMFNEVGFDWRELYAKRMAPPHKPKNPASSTLTVKARHQRFLCPVLEPCLRRQTLTLRTFSRFPDVRTALDTSNFEAVSEEDKVLAYTGPQKLFEGF 789
            V+ F+C CVV    ++H + VAYRDLKPENLL+   GY+KVIDFGFAK IPF+K   +  KSFTLCGTP+YL+PELVLS+GHDK+ DYWALGC LYELL G TPF +    E+FK+ ++S ++L FP+      QDLI +LLT N   RLGNL  G  D+  HP F +V F+W  L  +    P+                                         P ++  LDTSNFE+  EE+ V  Y G Q++F+ F
Sbjct:   64 VSQFYCSCVVSAFSHIHGLGVAYRDLKPENLLMDATGYIKVIDFGFAKHIPFEKRGKIHHKSFTLCGTPEYLSPELVLSKGHDKSADYWALGCLLYELLVGHTPFANDNHQEVFKRILQSTKYLRFPSRMGKKVQDLIHKLLTTNPIMRLGNLEKGTDDVKEHPWFKDVNFEWERLERRGYKAPY----------------------------------------VPVIKDPLDTSNFESYEEEEDVKKYKGNQEIFKEF 283          
BLAST of mRNA_Ecto-sp13_S_contig15286.3973.1 vs. uniprot
Match: A0A7S2RAC3_9STRA (cGMP-dependent protein kinase n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RAC3_9STRA)

HSP 1 Score: 246 bits (627), Expect = 2.170e-72
Identity = 125/259 (48.26%), Postives = 153/259 (59.07%), Query Frame = 1
Query:   13 ASFFCGCVVLPLQYLHQMSVAYRDLKPENLLLGQDGYLKVIDFGFAKRIPFKKDNTVQTKSFTLCGTPDYLAPELVLSRGHDKAVDYWALGCFLYELLCGRTPFTDPRQAEIFKKAIRSERFLAFPAGFPATAQDLIRRLLTPNATYRLGNLSGGIQDIMSHPMFNEVGFDWRELYAKRMAPPHKPKNPASSTLTVKARHQRFLCPVLEPCLRRQTLTLRTFSRFPDVRTALDTSNFEAVSEEDKVLAYTGPQKLFEGF 789
            A F+ GCV+    Y+H   VAYRDLKPENLL+  +G+LKVIDFGFAKRIPF K+     KSFTLCGTP+YL+PELVLS+GHDK+ DYWALGC +YELL G TPF    Q EIFK+ I+S R+L FP      A DL+ +LLT N  YRLGNL G +QDIM+H  F +  FDW  L AK+   P  PK                                        ++  LDTSNF+   E+  +  YTG Q+ F+GF
Sbjct:  597 AQFYSGCVISAFNYIHGKGVAYRDLKPENLLVTAEGFLKVIDFGFAKRIPFVKNGRTSAKSFTLCGTPEYLSPELVLSKGHDKSADYWALGCLVYELLIGHTPFQHDSQQEIFKRIIQSSRYLHFPKNMDTGAVDLVTKLLTVNPAYRLGNLQGRVQDIMNHQWFKKTKFDWAALDAKQQVAPFVPK----------------------------------------IKDPLDTSNFDPYPEDVHIPPYTGSQEPFQGF 815          
BLAST of mRNA_Ecto-sp13_S_contig15286.3973.1 vs. uniprot
Match: A0A397ECP4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397ECP4_9STRA)

HSP 1 Score: 221 bits (563), Expect = 5.020e-69
Identity = 104/186 (55.91%), Postives = 131/186 (70.43%), Query Frame = 1
Query:   13 ASFFCGCVVLPLQYLHQMSVAYRDLKPENLLLGQDGYLKVIDFGFAKRIPFKKDNTVQTKSFTLCGTPDYLAPELVLSRGHDKAVDYWALGCFLYELLCGRTPFTDPRQAEIFKKAIRSERFLAFPAGFPATAQDLIRRLLTPNATYRLGNLSGGIQDIMSHPMFNEVGFDWRELYAKRMAPPHKP 570
            A F+   VV   +YL  + VAYRDLKPENL++  +GYLK++DFGFAK IPF K   +  KSFTLCGTP+YLAPELVL++GHDK+VDYWALGC +YEL+ GRTPF    Q  IF+K I ++  L F A F   AQDLI +LL PN   RLG+L+GG+ D+++HP F    FDW+ L  K +  PH P
Sbjct:    1 ARFYAANVVEVFRYLQSLGVAYRDLKPENLMIDHEGYLKMVDFGFAKHIPFYKGAQLCEKSFTLCGTPEYLAPELVLNKGHDKSVDYWALGCLIYELMSGRTPFQHQEQQRIFEKIIHAKTALKFHAKFDPLAQDLITKLLEPNPGLRLGSLAGGMNDVVNHPWFATANFDWKGLVNKTLRAPHVP 186          
BLAST of mRNA_Ecto-sp13_S_contig15286.3973.1 vs. uniprot
Match: A0A7S2G969_9STRA (cGMP-dependent protein kinase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G969_9STRA)

HSP 1 Score: 234 bits (596), Expect = 4.490e-68
Identity = 111/262 (42.37%), Postives = 154/262 (58.78%), Query Frame = 1
Query:    7 SVASFFCGCVVLPLQYLHQMSVAYRDLKPENLLLGQDGYLKVIDFGFAKRIPFKKDNTVQTKSFTLCGTPDYLAPELVLSRGHDKAVDYWALGCFLYELLCGRTPFTDPRQAEIFKKAIRSERFLAFPAGFPATAQDLIRRLLTPNATYRLGNLSGGIQDIMSHPMFNEVG-FDWRELYAKRMAPPHKPKNPASSTLTVKARHQRFLCPVLEPCLRRQTLTLRTFSRFPDVRTALDTSNFEAVSEEDKVLAYTGPQKLFEGF 789
            S A F+ GC++    Y+H+M+VAYRDLKPEN+++   GYLK+IDFGFAK IP+KK+  + + S+T+CGTP+YLAPEL+ S+GHDK+VDYWALGC +YEL+CGRTPF    Q ++F+  + S + L FP+ F   A+DL+++LL    TYRLGN   G+ +IM H  F     F W +L    +  P+                                         P +R ALDTSNF+   E+  V+ Y GPQ +F+ F
Sbjct:  569 SAAMFYSGCIISAFHYIHEMNVAYRDLKPENIMIDSSGYLKMIDFGFAKTIPYKKNGEIHSSSYTICGTPEYLAPELIQSKGHDKSVDYWALGCLVYELICGRTPFAHENQRDLFQNILYSRKTLKFPSKFNVQAKDLVQQLLKQEPTYRLGNTKDGVDEIMQHKWFKTSSTFTWEDLNQMNLKAPY----------------------------------------VPTIRGALDTSNFDPYPEDSHVVTYRGPQDVFDEF 790          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15286.3973.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTW0_ECTSI2.320e-18195.44cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
A0A6H5JZB9_9PHAE1.600e-14584.79cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
A0A835Z7Z1_9STRA1.760e-10059.85cGMP-dependent protein kinase n=1 Tax=Tribonema mi... [more]
A0A835YV03_9STRA8.950e-9961.30cGMP-dependent protein kinase n=1 Tax=Tribonema mi... [more]
A0A7S2CPB2_9STRA1.930e-7949.24Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3XNP9_HETAK1.620e-7660.64Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2R9B3_9STRA1.250e-7445.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2RAC3_9STRA2.170e-7248.26cGMP-dependent protein kinase n=2 Tax=Rhizochromul... [more]
A0A397ECP4_9STRA5.020e-6955.91Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A7S2G969_9STRA4.490e-6842.37cGMP-dependent protein kinase n=1 Tax=Dictyocha sp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15286contigEcto-sp13_S_contig15286:1500..4205 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score519.2
Seed ortholog evalue1.1e-144
Seed eggNOG ortholog2880.D8LTW0
Model size792
KEGG koko:K07376,ko:K19477
KEGG Pathwayko04022,ko04270,ko04540,ko04611,ko04713,ko04714,ko04730,ko04740,ko04923,ko04924,ko04970,map04022,map04270,map04540,map04611,map04713,map04714,map04730,map04740,map04923,map04924,map04970
KEGG ModuleM00694
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.cGMP-dependent protein kinase activity
EggNOG OGsCOG0664@1,KOG0614@2759
Ec32 ortholog descriptionRmlC-like jelly roll fold
Ec32 orthologEc-12_004110.1
EC2.7.11.12
Cds size792
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462812.9167712-CDS-Ecto-sp13_S_contig15286:1499..15981681462812.9167712-CDS-Ecto-sp13_S_contig15286:1499..1598Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15286 1500..1598 -
1681462812.9272842-CDS-Ecto-sp13_S_contig15286:1855..19751681462812.9272842-CDS-Ecto-sp13_S_contig15286:1855..1975Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15286 1856..1975 -
1681462812.9353075-CDS-Ecto-sp13_S_contig15286:2471..26491681462812.9353075-CDS-Ecto-sp13_S_contig15286:2471..2649Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15286 2472..2649 -
1681462812.9434488-CDS-Ecto-sp13_S_contig15286:2965..32311681462812.9434488-CDS-Ecto-sp13_S_contig15286:2965..3231Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15286 2966..3231 -
1681462812.9516628-CDS-Ecto-sp13_S_contig15286:4076..42051681462812.9516628-CDS-Ecto-sp13_S_contig15286:4076..4205Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15286 4077..4205 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15286.3973.1prot_Ecto-sp13_S_contig15286.3973.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15286 1500..4205 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15286.3973.1

>prot_Ecto-sp13_S_contig15286.3973.1 ID=prot_Ecto-sp13_S_contig15286.3973.1|Name=mRNA_Ecto-sp13_S_contig15286.3973.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=264bp
SLSVASFFCGCVVLPLQYLHQMSVAYRDLKPENLLLGQDGYLKVIDFGFA
KRIPFKKDNTVQTKSFTLCGTPDYLAPELVLSRGHDKAVDYWALGCFLYE
LLCGRTPFTDPRQAEIFKKAIRSERFLAFPAGFPATAQDLIRRLLTPNAT
YRLGNLSGGIQDIMSHPMFNEVGFDWRELYAKRMAPPHKPKNPASSTLTV
KARHQRFLCPVLEPCLRRQTLTLRTFSRFPDVRTALDTSNFEAVSEEDKV
LAYTGPQKLFEGF*
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mRNA from alignment at Ecto-sp13_S_contig15286:1500..4205-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15286.3973.1 ID=mRNA_Ecto-sp13_S_contig15286.3973.1|Name=mRNA_Ecto-sp13_S_contig15286.3973.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2706bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15286:1500..4205- (Ectocarpus species13 EcNAP12_S_4_19m)
TCTTTGAGCGTGGCGTCCTTCTTCTGCGGGTGCGTGGTCCTGCCCCTGCA GTACCTTCACCAGATGTCGGTGGCTTACCGCGACCTCAAGCCAGAGAACC TCTTGCTCGGTCAAGACGGTTACCTTAAGGTACGCAGATGATTACCATAG ATGATACCGTCACTTGTGAGTGTCTGTCTTTCTATTTGTCGGTCTCCAGC GGGCTTCCTTCAACTGCTGTACATGCACCCGTTTTTCACACCTTGGTTTG ACGTCAAGGTACGCATAGATGATACCGTCACTTGTGAGTGTCTGACCGTT TGTCTGGCTTCCTATCTGTTGGTCTAGAGAGCGCCCCTTCCCTTCAACTG CTGTACAGGCACCCGTTTTTTTGCACACCTTGATATGACGTCAACTGTAT GCATACTTGTTTGTGTTTGTTGCTCCCTCTCTTCAGCTGCTCGTGGGTCT ACAGACACCCATTTCGAACCTTGATCTGGTGTATCTGTATGCAGTAGCTC CCACTCTTGAGCTGATGCCGCGGAGTCTGCCCGCCTTATTTATTGCGCCT ATTTGTTTGTGTGTCCAAGACCAGTCGCTACTTGTAGCTGTCGTCTACGC ACATACGTACATGTTTTTTTGTAGTAGTGCTGTACATGCTCCCCGACGGG CACGATGTTCCCGTCGCATGTCGGCAGAGGAGCGCTACAGCAGGGGGCCG GCCGAGCACAAGTGCCTCCTCGCTCGCGTGTGGCGACTTAGCCCGCACTC TCGCTTGCAAGAGGCGCGTTGCTTGAGTGTGGTGCTGCACCAAAGGCGTC ACATCTTCTTGACTCCCGTCACGCGAACAACAAGCGCAACACCGGGAGGG AGGAAAAAGAGCAAAGTACTCACTCATACCTCTCCCACCCGACCCCCCAT CCTGCCAAGGCAACAACTGTTTGATACCAACGAAAGATTCCACGTACCAA ACCGACCAACCACGCCAACCACAGGTGATCGACTTCGGGTTCGCCAAGCG CATCCCCTTCAAGAAGGACAACACGGTGCAGACCAAGTCCTTCACGCTGT GCGGGACGCCCGACTACCTTGCCCCCGAGCTGGTGCTGTCCCGCGGCCAC GATAAGGCCGTCGACTACTGGGCCCTCGGCTGCTTCCTGTACGAGCTCCT GTGCGGCAGGACCCCCTTCACGGACCCAAGGCAGGCCGAAATCTTCAAGA AGGCCATCCGCAGCGAGCGGTTTTTGGCGTTCCCTGCTGGGTGAGAGACA CGTGTCTTTTGTTTCTTGTTTTTGGACACCGGTGGCCTGACAGAGGAGGC TTGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGGTGGTGGTATGCACATG TGGTGCGTTGCATGGTGTAGAGAAACTCTCCCTTGGTGAAGAAGATGTGG GAATAGCATGACGTTGCACTCTCTCCCCACCTTCTCTATCTCTCACCTGC TCCCTTTCTTACCTCCCCCTCCCCGCCCTCGTGCCCTCTCTTCCGCCCCC TCCCTCTCTTCCATCTCTCCTCTATGCCCGGCCTGGAAAAAAACGCGCGA CGATAGCTTCCCCGCAACGGCCCAGGACCTCATCAGACGTCTCCTCACCC CAAACGCCACCTACCGCCTGGGAAACCTCAGCGGGGGCATTCAGGACATC ATGTCGCACCCCATGTTCAACGAGGTCGGCTTCGACTGGCGAGAGCTCTA CGCCAAGCGCATGGCCCCTCCGCACAAGCCGAAGGTGCGAAGAAGGCCAC CTGGATGAGCGCCGAAAGAAGGCCGTCACTATTTTATTTTTTATTTTGTT GTGTGTATGTCTTGCTTCTGACGAGAGGGGATTAGCGAGGAACGAAGGCA GGGACGGAGGGATGGTTGCGTGTGCGTGTTGACAGAGGGCTGTGACGCGA TGTCATGATGTCGTCGCATTGCGATGTGATGTGATGTGGTGTCAAACGAC TTGTATATGTTGTTGGACGTGGCGCAGTGAGCGCCCTTGTGGCGGCGGGC TTTGTACGGTGCGTTGTTTCGTGGTTGCTGTCCTGCGACATGGGTGTACA GCAGTGCTTCGCACCTGATATCACTCGCTCGCTCTCTTTGGGTGCTTCTC CCAAATTAGACGGTAGGAATACCAAATAATTTTTGTGTGGTATGACTCGT TACATAGTTGCGGGCCTTGGATTGTTTCGGTGCCGATGTTTTTTGCCTTC AGTTTATGCACGTGTTTTCTTGTCGAAAAGAACCCGGCCTCGAGCACCCT TACGGTCAAAGCGCGTCACCAGCGCTTCCTTTGCCCAGTGCTTGAGCCCT GTTTGCGGCGGCAAACCCTAACCCTTCGCACGTTCAGCCGTTTCCCTGAC GTGAGTCATGTACCGCACACGAATGTATGTTCCCTCTGATTCTTTTTTTT GCGAAAGGCCATGATTGACAGGACCCCCGAGCTTGTGCATAAAGTATTTT ACTCCGAGGTTGATTTGTGTTCATCTTTTTGCCCTGTGGGATGTTCGTCG TCCCTCTCCCTCCCCTACCTCACAACATGCCCATCCTCAACCGACTTACC TCAATCCTTGATGCGACTTTCTGTTTCGTGGTTCGGTGTGTTGGTGTGGG GGGGCAGGTCCGAACCGCTTTGGACACGTCCAACTTCGAGGCGGTGAGCG AGGAGGACAAGGTCTTGGCCTACACCGGGCCCCAGAAGCTCTTCGAAGGG TTCTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15286:1500..4205-

>mRNA_Ecto-sp13_S_contig15286.3973.1 ID=mRNA_Ecto-sp13_S_contig15286.3973.1|Name=mRNA_Ecto-sp13_S_contig15286.3973.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=792bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15286:1500..4205- (Ectocarpus species13 EcNAP12_S_4_19m)
TCTTTGAGCGTGGCGTCCTTCTTCTGCGGGTGCGTGGTCCTGCCCCTGCA
GTACCTTCACCAGATGTCGGTGGCTTACCGCGACCTCAAGCCAGAGAACC
TCTTGCTCGGTCAAGACGGTTACCTTAAGGTGATCGACTTCGGGTTCGCC
AAGCGCATCCCCTTCAAGAAGGACAACACGGTGCAGACCAAGTCCTTCAC
GCTGTGCGGGACGCCCGACTACCTTGCCCCCGAGCTGGTGCTGTCCCGCG
GCCACGATAAGGCCGTCGACTACTGGGCCCTCGGCTGCTTCCTGTACGAG
CTCCTGTGCGGCAGGACCCCCTTCACGGACCCAAGGCAGGCCGAAATCTT
CAAGAAGGCCATCCGCAGCGAGCGGTTTTTGGCGTTCCCTGCTGGCTTCC
CCGCAACGGCCCAGGACCTCATCAGACGTCTCCTCACCCCAAACGCCACC
TACCGCCTGGGAAACCTCAGCGGGGGCATTCAGGACATCATGTCGCACCC
CATGTTCAACGAGGTCGGCTTCGACTGGCGAGAGCTCTACGCCAAGCGCA
TGGCCCCTCCGCACAAGCCGAAGAACCCGGCCTCGAGCACCCTTACGGTC
AAAGCGCGTCACCAGCGCTTCCTTTGCCCAGTGCTTGAGCCCTGTTTGCG
GCGGCAAACCCTAACCCTTCGCACGTTCAGCCGTTTCCCTGACGTCCGAA
CCGCTTTGGACACGTCCAACTTCGAGGCGGTGAGCGAGGAGGACAAGGTC
TTGGCCTACACCGGGCCCCAGAAGCTCTTCGAAGGGTTCTAA
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