prot_Ecto-sp13_S_contig15259.3956.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig15259.3956.1
Unique Nameprot_Ecto-sp13_S_contig15259.3956.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length188
Homology
BLAST of mRNA_Ecto-sp13_S_contig15259.3956.1 vs. uniprot
Match: D7FNY1_ECTSI (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY1_ECTSI)

HSP 1 Score: 335 bits (859), Expect = 1.240e-104
Identity = 164/181 (90.61%), Postives = 164/181 (90.61%), Query Frame = 0
Query:    1 MMGKRVNYACRSVISPDPYVGTTEIGIPLRFAKELTYPQPVADWNVEAMRQLVENGTSVYPGANFVEDSSGRMLHLDRLSDLKRRGVAARLLSSPGQKVRKKDSALPSFFQHPVWRHLTDGDCMLVNRQPTLHKPGIMAHRVRVLRNPGYQTIRMHYANCNTYNADFDGDEINCHLPQVRL 181
            MMGKRVNYACRSVISPDPYVGTTEIGIPLRFAKELTYPQPVADWNVEAMRQLVENGTSVYPGANFVEDSSGRMLHLDRLSDLKRRGVAARLLSSPGQKV               WRHLTDGDCMLVNRQPTLHKPGIMAHRVRVLRNPGYQTIRMHYANCNTYNADFDGDEINCHLPQ  L
Sbjct:  494 MMGKRVNYACRSVISPDPYVGTTEIGIPLRFAKELTYPQPVADWNVEAMRQLVENGTSVYPGANFVEDSSGRMLHLDRLSDLKRRGVAARLLSSPGQKV---------------WRHLTDGDCMLVNRQPTLHKPGIMAHRVRVLRNPGYQTIRMHYANCNTYNADFDGDEINCHLPQNEL 659          
BLAST of mRNA_Ecto-sp13_S_contig15259.3956.1 vs. uniprot
Match: A0A6H5KJ16_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ16_9PHAE)

HSP 1 Score: 329 bits (844), Expect = 3.720e-101
Identity = 161/181 (88.95%), Postives = 162/181 (89.50%), Query Frame = 0
Query:    1 MMGKRVNYACRSVISPDPYVGTTEIGIPLRFAKELTYPQPVADWNVEAMRQLVENGTSVYPGANFVEDSSGRMLHLDRLSDLKRRGVAARLLSSPGQKVRKKDSALPSFFQHPVWRHLTDGDCMLVNRQPTLHKPGIMAHRVRVLRNPGYQTIRMHYANCNTYNADFDGDEINCHLPQVRL 181
            MMGKRVNYACRSVISPDPY+GTTEIGIPLRFAKELTYPQPVADWNVEAMRQLVENGTSVYPGANFVEDSSGRMLHLDRLSDLKRRGVAARLLS PGQKV               WRHL DGDCMLVNRQPTLHKPGIMAHRVRVLRNPGYQTIRMHYANCNTYNADFDGDEINCHLPQ  L
Sbjct:  495 MMGKRVNYACRSVISPDPYLGTTEIGIPLRFAKELTYPQPVADWNVEAMRQLVENGTSVYPGANFVEDSSGRMLHLDRLSDLKRRGVAARLLSIPGQKV---------------WRHLKDGDCMLVNRQPTLHKPGIMAHRVRVLRNPGYQTIRMHYANCNTYNADFDGDEINCHLPQNEL 660          
BLAST of mRNA_Ecto-sp13_S_contig15259.3956.1 vs. uniprot
Match: A0A836C8M0_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8M0_9STRA)

HSP 1 Score: 266 bits (681), Expect = 3.190e-79
Identity = 126/181 (69.61%), Postives = 145/181 (80.11%), Query Frame = 0
Query:    1 MMGKRVNYACRSVISPDPYVGTTEIGIPLRFAKELTYPQPVADWNVEAMRQLVENGTSVYPGANFVEDSSGRMLHLDRLSDLKRRGVAARLLSSPGQKVRKKDSALPSFFQHPVWRHLTDGDCMLVNRQPTLHKPGIMAHRVRVLRNPGYQTIRMHYANCNTYNADFDGDEINCHLPQVRL 181
            MMGKRVN++CRSVISPDPY+GTTEIGIP RFAK L +PQPVA WNVE +R LVENG   YPGAN++ED++G++++L R S ++R+G+AARLLS PGQKV               WRHL D D MLVNRQPTLHKPGIMAH  R+LRNP YQTIRMHYANCNTYNADFDGDEINCHLPQ  +
Sbjct:  405 MMGKRVNHSCRSVISPDPYIGTTEIGIPERFAKVLCFPQPVAAWNVEHLRTLVENGADFYPGANYIEDAAGKLINLRRQSAVQRKGMAARLLSEPGQKV---------------WRHLQDRDAMLVNRQPTLHKPGIMAHHARILRNPTYQTIRMHYANCNTYNADFDGDEINCHLPQNEV 570          
BLAST of mRNA_Ecto-sp13_S_contig15259.3956.1 vs. uniprot
Match: K8YRY5_NANGC (DNA-directed RNA polymerase subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YRY5_NANGC)

HSP 1 Score: 245 bits (626), Expect = 8.050e-72
Identity = 117/181 (64.64%), Postives = 137/181 (75.69%), Query Frame = 0
Query:    1 MMGKRVNYACRSVISPDPYVGTTEIGIPLRFAKELTYPQPVADWNVEAMRQLVENGTSVYPGANFVEDSSGRMLHLDRLSDLKRRGVAARLLSSPGQKVRKKDSALPSFFQHPVWRHLTDGDCMLVNRQPTLHKPGIMAHRVRVLRNPGYQTIRMHYANCNTYNADFDGDEINCHLPQVRL 181
            MMGKRVN+ACRSVISPDPY+GT+EIG+PLRFAK LTY QPV  +N   +R+ VE G   +PGAN+VED+ GR++ L R+   +RR +AARLL+ PGQ                VWRHL DGD +L+NRQPTLHKPGIMAHR RVLR+P  QTIRMHYANCNTYNADFDGDE+NCH PQ  L
Sbjct:  469 MMGKRVNFACRSVISPDPYIGTSEIGLPLRFAKVLTYSQPVTPFNAAQLREAVERGAEGHPGANYVEDARGRLIDLRRMDAGRRRALAARLLTPPGQ---------------TVWRHLQDGDMVLMNRQPTLHKPGIMAHRARVLRSPAQQTIRMHYANCNTYNADFDGDEMNCHFPQDEL 634          
BLAST of mRNA_Ecto-sp13_S_contig15259.3956.1 vs. uniprot
Match: A0A6A5A090_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A090_9STRA)

HSP 1 Score: 224 bits (570), Expect = 4.820e-71
Identity = 110/184 (59.78%), Postives = 132/184 (71.74%), Query Frame = 0
Query:    1 MMGKRVNYACRSVISPDPYVGTTEIGIPLRFAKELTYPQPVADWNVEAMRQLVENGTSVYPGANFVEDSSGRMLHLDRLSDLKRRGVAARLLSSPGQKVRKKDSALPSFFQHPV---WRHLTDGDCMLVNRQPTLHKPGIMAHRVRVLRNPGYQTIRMHYANCNTYNADFDGDEINCHLPQVRL 181
            MMGKRVNYA RSVISPDPY+ T+EIG+PL+FAK LT PQ V  WNVE MRQLVENG  ++PGANFVE+  G+++ L + +  +R  +   LL+       +  SA  +  +H V   WRHL  GD +L+NRQPTLHKP +MAH  RVL NP  QTIRMHYANCNTYNADFDGDE+N H PQ  L
Sbjct:   40 MMGKRVNYAARSVISPDPYISTSEIGVPLKFAKTLTLPQAVTPWNVEEMRQLVENGPDIHPGANFVENERGQLIDLSKRTHHQRVAIGKTLLT-------RSASAHGAHQEHKVKRVWRHLHSGDVVLMNRQPTLHKPSMMAHVTRVLTNPAMQTIRMHYANCNTYNADFDGDEMNMHFPQNEL 216          
BLAST of mRNA_Ecto-sp13_S_contig15259.3956.1 vs. uniprot
Match: A0A7S3HJA2_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJA2_9STRA)

HSP 1 Score: 226 bits (576), Expect = 2.380e-67
Identity = 110/181 (60.77%), Postives = 132/181 (72.93%), Query Frame = 0
Query:    1 MMGKRVNYACRSVISPDPYVGTTEIGIPLRFAKELTYPQPVADWNVEAMRQLVENGTSVYPGANFVEDSSGRMLHLDRLSDLKRRGVAARLLSSPGQKVRKKDSALPSFFQHPVWRHLTDGDCMLVNRQPTLHKPGIMAHRVRVLRNPGYQTIRMHYANCNTYNADFDGDEINCHLPQVRL 181
            MMGKRVN+ CRSVISPDPY+GT EIGIP+ FAK L YP PV +WNV+ +R LV+ G   YPGAN +E + G+++ L++LS ++R G A  LLS+PG KV                RHL DGD +LVNRQPTLHKPGIMAH+ RVLR+   QT+RMHYANCNTYNADFDGDE+NCH  Q  L
Sbjct:    6 MMGKRVNFCCRSVISPDPYIGTNEIGIPVHFAKSLHYPTPVNNWNVKYLRTLVQRGPFQYPGANQIELADGKIIKLEKLSAMERAGKAKLLLSTPGIKVH---------------RHLIDGDVLLVNRQPTLHKPGIMAHKARVLRHVKEQTLRMHYANCNTYNADFDGDEMNCHFVQSEL 171          
BLAST of mRNA_Ecto-sp13_S_contig15259.3956.1 vs. uniprot
Match: A0A484E7B9_BRELC (DNA-directed RNA polymerase subunit n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E7B9_BRELC)

HSP 1 Score: 231 bits (590), Expect = 5.570e-67
Identity = 111/186 (59.68%), Postives = 132/186 (70.97%), Query Frame = 0
Query:    1 MMGKRVNYACRSVISPDPYVGTTEIGIPLRFAKELTYPQPVADWNVEAMRQLVENGTSVYPGANFVEDSSGRMLHLDRLSDLKRRGVAARLLSSPGQKVRKKDSALPSFFQHPVWRHLTDGDCMLVNRQPTLHKPGIMAHRVRVLRNPGYQTIRMHYANCNTYNADFDGDEINCHLPQVRLLGDNA 186
            MMGKRVNYA RSVISPDPY+ T++IG+PLRFAK LTYPQPV  WNVE MRQLV NG  ++PGANFVE  SGR++ L + +  +R  ++  LL+     +    + +       VWRHL  GD +L+NRQPTLHKP IMAH  RVL NP  QTIRMHYANCNT+NADFDGDE+N H PQ  L    A
Sbjct:  470 MMGKRVNYAARSVISPDPYISTSQIGVPLRFAKTLTYPQPVTPWNVEEMRQLVINGPDMHPGANFVESESGRLIDLSKRTPHQREAISKTLLTRSASALGTSKNRVKR-----VWRHLKTGDVVLMNRQPTLHKPSIMAHTTRVLTNPNMQTIRMHYANCNTFNADFDGDEMNMHFPQNELARSEA 650          
BLAST of mRNA_Ecto-sp13_S_contig15259.3956.1 vs. uniprot
Match: A0A5D6XPF2_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XPF2_9STRA)

HSP 1 Score: 231 bits (589), Expect = 7.600e-67
Identity = 114/184 (61.96%), Postives = 133/184 (72.28%), Query Frame = 0
Query:    1 MMGKRVNYACRSVISPDPYVGTTEIGIPLRFAKELTYPQPVADWNVEAMRQLVENGTSVYPGANFVEDSSGRMLHLDRLSDLKRRGVAARLLSSPGQKVRKKDSALPSFFQHPV---WRHLTDGDCMLVNRQPTLHKPGIMAHRVRVLRNPGYQTIRMHYANCNTYNADFDGDEINCHLPQVRL 181
            MMGKRVNYA RSVISPDPY+ T++IG+PLRFAK LTYPQPV  WNVE MRQLV NG  V+PGANFVE  SGR++ L R S  +R  ++  LL+        + ++     QH V   WRHL  GD +L+NRQPTLHKP +MAH  RVL NP  QTIRMHYANCNT+NADFDGDE+N H PQ  L
Sbjct:  467 MMGKRVNYAARSVISPDPYISTSQIGVPLRFAKTLTYPQPVTPWNVEEMRQLVINGPDVHPGANFVESESGRLIDLKRRSAHQREAISKTLLT--------RSASAQGTSQHRVKRVWRHLHTGDIVLMNRQPTLHKPSMMAHVTRVLTNPAMQTIRMHYANCNTFNADFDGDEMNMHFPQNEL 642          
BLAST of mRNA_Ecto-sp13_S_contig15259.3956.1 vs. uniprot
Match: A0A7S1FLV4_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FLV4_9STRA)

HSP 1 Score: 229 bits (584), Expect = 7.980e-67
Identity = 113/186 (60.75%), Postives = 137/186 (73.66%), Query Frame = 0
Query:    1 MMGKRVNYACRSVISPDPYVGTTEIGIPLRFAKELTYPQPVADWNVEAMRQLVENGTSVYPGANFVEDSSGRMLHLDRLSDLKRRGVAARLLSSPGQKVRKKDSALPSFFQHPVWRHLTDGDCMLVNRQPTLHKPGIMAHRVRVLRNPGYQTIRMHYANCNTYNADFDGDEINCHLPQVRLLGDNA 186
            MMGKRVNYACRSVISPDPY+GT EIG+PL+FA++LTYP  V  +NV  MR+LV NGT+ YPGA +V+D  G+ + L  + D+KR  +A RLLS  GQ V              V R + +GD +L+NRQPTLHKPGIMAH+VR+L NP  QTIRMHYANCNTYNADFDGDE+NCHLPQ ++    A
Sbjct:  331 MMGKRVNYACRSVISPDPYIGTNEIGLPLKFAQKLTYPCHVTAFNVAEMRKLVANGTARYPGAVWVQDPHGKRMMLTHMIDVKREAIANRLLSGEGQYV--------------VGRQIQNGDMVLMNRQPTLHKPGIMAHQVRILYNPLQQTIRMHYANCNTYNADFDGDEMNCHLPQDQISRSEA 502          
BLAST of mRNA_Ecto-sp13_S_contig15259.3956.1 vs. uniprot
Match: H3H1S7_PHYRM (DNA-directed RNA polymerase subunit n=22 Tax=Peronosporaceae TaxID=4777 RepID=H3H1S7_PHYRM)

HSP 1 Score: 231 bits (588), Expect = 1.030e-66
Identity = 112/186 (60.22%), Postives = 131/186 (70.43%), Query Frame = 0
Query:    1 MMGKRVNYACRSVISPDPYVGTTEIGIPLRFAKELTYPQPVADWNVEAMRQLVENGTSVYPGANFVEDSSGRMLHLDRLSDLKRRGVAARLLSSPGQKVRKKDSALPSFFQHPVWRHLTDGDCMLVNRQPTLHKPGIMAHRVRVLRNPGYQTIRMHYANCNTYNADFDGDEINCHLPQVRLLGDNA 186
            MMGKRVNYA RSVISPDPY+ T++IG+PLRFAK LTYPQPV  WNVE MRQLV NG  V+PGANFVE  +GR++ L + S  +R  ++  LL+          + +       VWRHL  GD +L+NRQPTLHKP IMAH  RVL NP  QTIRMHYANCNT+NADFDGDE+N H PQ  L    A
Sbjct:  461 MMGKRVNYAARSVISPDPYISTSQIGVPLRFAKTLTYPQPVTPWNVEEMRQLVINGPDVHPGANFVESENGRLIDLSKRSPHQREAISKTLLTRSASAQGTSKNRVKR-----VWRHLKTGDVVLMNRQPTLHKPSIMAHTTRVLTNPKMQTIRMHYANCNTFNADFDGDEMNMHFPQNELARSEA 641          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15259.3956.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNY1_ECTSI1.240e-10490.61DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
A0A6H5KJ16_9PHAE3.720e-10188.95DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
A0A836C8M0_9STRA3.190e-7969.61DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
K8YRY5_NANGC8.050e-7264.64DNA-directed RNA polymerase subunit n=2 Tax=Monodo... [more]
A0A6A5A090_9STRA4.820e-7159.78DNA-directed RNA polymerase (Fragment) n=1 Tax=Aph... [more]
A0A7S3HJA2_9STRA2.380e-6760.77DNA-directed RNA polymerase (Fragment) n=1 Tax=Spu... [more]
A0A484E7B9_BRELC5.570e-6759.68DNA-directed RNA polymerase subunit n=1 Tax=Bremia... [more]
A0A5D6XPF2_9STRA7.600e-6761.96DNA-directed RNA polymerase subunit n=1 Tax=Pythiu... [more]
A0A7S1FLV4_9STRA7.980e-6760.75DNA-directed RNA polymerase (Fragment) n=1 Tax=Cor... [more]
H3H1S7_PHYRM1.030e-6660.22DNA-directed RNA polymerase subunit n=22 Tax=Peron... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006592RNA polymerase, N-terminalSMARTSM00663rpolaneu7coord: 1..183
e-value: 7.2E-14
score: 46.9
NoneNo IPR availableGENE3D3.30.1490.180coord: 36..120
e-value: 9.8E-67
score: 226.2
NoneNo IPR availableGENE3D2.40.40.20coord: 1..179
e-value: 9.8E-67
score: 226.2
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 1..179
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 1..178
IPR000722RNA polymerase, alpha subunitPFAMPF00623RNA_pol_Rpb1_2coord: 3..179
e-value: 1.1E-54
score: 185.1
IPR015699DNA-directed RNA pol I, largest subunitPANTHERPTHR19376:SF11DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA1coord: 1..179

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15259contigEcto-sp13_S_contig15259:591..1915 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15259.3956.1mRNA_Ecto-sp13_S_contig15259.3956.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig15259 591..3025 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig15259.3956.1 ID=prot_Ecto-sp13_S_contig15259.3956.1|Name=mRNA_Ecto-sp13_S_contig15259.3956.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=188bp
MMGKRVNYACRSVISPDPYVGTTEIGIPLRFAKELTYPQPVADWNVEAMR
QLVENGTSVYPGANFVEDSSGRMLHLDRLSDLKRRGVAARLLSSPGQKVR
KKDSALPSFFQHPVWRHLTDGDCMLVNRQPTLHKPGIMAHRVRVLRNPGY
QTIRMHYANCNTYNADFDGDEINCHLPQVRLLGDNAI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006592RNA_pol_N
IPR000722RNA_pol_asu
IPR015699DNA-dir_RNA_pol1_lsu