mRNA_Ecto-sp13_S_contig15237.3944.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15237.3944.1
Unique NamemRNA_Ecto-sp13_S_contig15237.3944.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15237.3944.1 vs. uniprot
Match: D8LF99_ECTSI (Protein for assembly of pre-ribosomal particles containing 18S rRNA n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF99_ECTSI)

HSP 1 Score: 421 bits (1082), Expect = 1.030e-143
Identity = 238/243 (97.94%), Postives = 240/243 (98.77%), Query Frame = 1
Query:   16 KQAKSENSKIYLRGLPWDTPDDDVKDFFKACGKIVTVEQPKNPDGRSSGTAYVTFDSAAAATKAVELDGQELGGRWLKIMMSFEKPDHARNGEAKVKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANSDVMGRPIRVDYAAPRAPRDDSFGGGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNARAKQGIQSFQGTKKSFD 744
            K+AKSENSKIYLRGLPWDT DDDVKDFFKACGKIVTVEQPKNPDGRSSGTAYVTFDSAAAA KA+ELDGQELGGRWLKIMMSFEKPDHARNGE KVKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANSDVMGRPIRVDYAAPRAPRDDSFGGGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNARAKQGIQSFQGTKKSFD
Sbjct:  275 KKAKSENSKIYLRGLPWDTSDDDVKDFFKACGKIVTVEQPKNPDGRSSGTAYVTFDSAAAAAKAIELDGQELGGRWLKIMMSFEKPDHARNGEPKVKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANSDVMGRPIRVDYAAPRAPRDDSFGGGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNARAKQGIQSFQGTKKSFD 517          
BLAST of mRNA_Ecto-sp13_S_contig15237.3944.1 vs. uniprot
Match: A0A7S2V571_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V571_9STRA)

HSP 1 Score: 244 bits (623), Expect = 6.810e-75
Identity = 112/183 (61.20%), Postives = 142/183 (77.60%), Query Frame = 1
Query:   40 KIYLRGLPWDTPDDDVKDFFKACGKIVTVEQPKNPDGRSSGTAYVTFDSAAAATKAVELDGQELGGRWLKIMMSFEKPDHARNGEAKVKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANSDVMGRPIRVDYAAPRAPRDDSFGGGG 588
            K++++GLPW+T +  +KDFFK  G I +++QP N DGR+SGTAYV FDS  +A KA+ELDG  +G RW+K++++ + P   + GE   KP GC TVFIGNLSW IDEDT+RQTFG+CGDIKSVRFAEDRETG FRGFG+V+FYDG+  D AMKL  SD+MGR +R+DY+APR      FGGGG
Sbjct:  312 KVFMKGLPWETEEYQIKDFFKGIGTIESIDQPLNKDGRASGTAYVVFDSTESAEKALELDGGTVGERWVKLILARDIPPPPKPGE---KPEGCDTVFIGNLSWDIDEDTVRQTFGDCGDIKSVRFAEDRETGRFRGFGYVQFYDGDATDEAMKLNGSDLMGREVRIDYSAPRG-----FGGGG 486          
BLAST of mRNA_Ecto-sp13_S_contig15237.3944.1 vs. uniprot
Match: A0A835ZAT4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAT4_9STRA)

HSP 1 Score: 225 bits (574), Expect = 1.580e-69
Identity = 107/186 (57.53%), Postives = 139/186 (74.73%), Query Frame = 1
Query:   37 SKIYLRGLPWDTPDDDVKDFFKACGKIVTVEQPKNPDGRSSGTAYVTFDSAAAATKAVELDGQELGGRWLKIMMSFEKPDHARNG--EAKVKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANSDVMGRPIRVDYAAPRAPRDDSFGGGG 588
            +KIY+RGLPW   +++V+DFFK CG+I + + P + +GR+SGTA+V F  + AA K+ E        RWLKI+++ E+      G  + K KP GCTTVFIGNLSW +DED +R  FGECG+I SVRFA DRETG+F+GFGHVEF DGE VDAA+ +A +++ GRP+RVDYAAPRAPR+ SFGGGG
Sbjct:  100 TKIYVRGLPWSATEEEVRDFFKECGEIESCDLPTDHNGRASGTAFVVFADSDAANKSRE--------RWLKIVLATERAARPSFGAPDKKDKPEGCTTVFIGNLSWDVDEDAVRAAFGECGEIASVRFATDRETGDFKGFGHVEFVDGEGVDAAIDMAGTEIAGRPVRVDYAAPRAPRE-SFGGGG 276          
BLAST of mRNA_Ecto-sp13_S_contig15237.3944.1 vs. uniprot
Match: A0A7S3UY59_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UY59_HETAK)

HSP 1 Score: 217 bits (553), Expect = 4.460e-64
Identity = 105/184 (57.07%), Postives = 131/184 (71.20%), Query Frame = 1
Query:   40 KIYLRGLPWDTPDDDVKDFFKACGKIVTVEQPKNPDGRSSGTAYVTFDSAAAATKAVELDGQELGGRWLKIMMSFEKPDHARNGEAKVKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANSDVMGRPIRVDYAAPRAPRDDSFGGGGR 591
            +I+++GLPW   DD+VK+FFK CG I+  + PK+ +GR+SGTAYV+F +     KA ELDG   G RWLKI  + E+P  A+ GE   +P GC TVF GNLSW IDE+++R+ F +CGDI SVRFAEDRETG+FRGFG+V FYDG   D AMKL    V GR IR+DY+APR    D  GGGGR
Sbjct:  332 RIFVKGLPWAATDDEVKEFFKDCGTILDCDMPKDHNGRASGTAYVSFSTDDERNKAYELDGATFGERWLKIEEARERPAAAKPGE---RPEGCDTVFCGNLSWDIDEESLREFFKDCGDISSVRFAEDRETGKFRGFGYVSFYDGACTDEAMKLTGQVVAGREIRLDYSAPR----DRSGGGGR 508          
BLAST of mRNA_Ecto-sp13_S_contig15237.3944.1 vs. uniprot
Match: A0A7S2RIH6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RIH6_9STRA)

HSP 1 Score: 213 bits (542), Expect = 6.970e-64
Identity = 94/173 (54.34%), Postives = 128/173 (73.99%), Query Frame = 1
Query:   37 SKIYLRGLPWDTPDDDVKDFFKACGKIVTVEQPKNPDGRSSGTAYVTFDSAAAATKAVELDGQELGGRWLKIMMSFEKPDHARNGEAKVKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANSDVMGRPIRVDYAAPR 555
            SKI++RGLPW   +D++++ F  CG+I  VEQP N DGRSSGTA + F SA++A  AVE++G + GGRWL I ++ +KP       ++ KP GC T+FIGNLSW IDED++R+ F ECG+I +VRFAED+ETG+FRGFGHVEF + +    A+ +A +D+MGR +RVDYA  R
Sbjct:  204 SKIFIRGLPWRASEDEIREHFGGCGEIKEVEQPMNSDGRSSGTALIVFGSASSAESAVEMNGGDFGGRWLDIKLADDKPIQTERAPSE-KPEGCLTIFIGNLSWQIDEDSVREAFQECGEITTVRFAEDKETGDFRGFGHVEFANTDSTTQAVAMAGTDIMGRAVRVDYAQDR 375          
BLAST of mRNA_Ecto-sp13_S_contig15237.3944.1 vs. uniprot
Match: A0A7S3Q248_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q248_9STRA)

HSP 1 Score: 213 bits (543), Expect = 1.830e-63
Identity = 92/172 (53.49%), Postives = 126/172 (73.26%), Query Frame = 1
Query:   40 KIYLRGLPWDTPDDDVKDFFKACGKIVTVEQPKNPDGRSSGTAYVTFDSAAAATKAVELDGQELGGRWLKIMMSFEKPDHARNGEAKVKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANSDVMGRPIRVDYAAPR 555
            K+Y+RGLPW   DD+++++F +CG+IV+ E P   DGRSSGTA + F +  A  K + L+G++ GGRWL I  + +KP  A   E   KP  C TVF GNLSW++DEDT+R+TF ECG+I S+RFA DRETGEF+GFGH+EF+  +  DAA+ +A +D+MGR +RVDYAA +
Sbjct:  207 KMYIRGLPWRATDDELREYFASCGEIVSCELPLQSDGRSSGTAEIEFSTKDACEKCMALNGEDFGGRWLSIKYASDKPAFAAR-ETSEKPPDCKTVFCGNLSWNVDEDTLRETFAECGEISSIRFATDRETGEFKGFGHIEFFSSDSTDAAIAMAGTDIMGRAVRVDYAADK 377          
BLAST of mRNA_Ecto-sp13_S_contig15237.3944.1 vs. uniprot
Match: A0A1Z5KL43_FISSO (Nucleolin n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KL43_FISSO)

HSP 1 Score: 205 bits (521), Expect = 1.810e-59
Identity = 93/173 (53.76%), Postives = 122/173 (70.52%), Query Frame = 1
Query:   28 SENSKIYLRGLPWDTPDDDVKDFFKACGKIVTVEQPKNPDGRSSGTAYVTFDSAAAATKAVELDGQELGGRWLKIMMSFEKPDHARNGEAKVKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANSDVMGRPIRVDYA 546
            +E +K+Y+RGLPW   + +V++FF ACG I + E P   DGRSSGTA + F++   A  A+EL+G +  GRWL I  S  KP  +   E   K  GC TVF+GNL+W +DEDT+RQ FGECG+I SVRFA DRETGEF+GFGH+EF D E  D A+ +A +D++GR +RVDYA
Sbjct:  272 TEGNKVYVRGLPWKAEEHEVQEFFAACGPIKSCEMPLMDDGRSSGTAIIEFETNEGAAAAIELNGGDFQGRWLSIKYSTPKPILSAR-EPTQKQDGCVTVFVGNLAWDVDEDTLRQAFGECGEITSVRFATDRETGEFKGFGHIEFTDTEATDKAIAMAGTDILGRQVRVDYA 443          
BLAST of mRNA_Ecto-sp13_S_contig15237.3944.1 vs. uniprot
Match: A0A7S1DDH5_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DDH5_CYCTE)

HSP 1 Score: 192 bits (488), Expect = 2.240e-58
Identity = 96/178 (53.93%), Postives = 124/178 (69.66%), Query Frame = 1
Query:   61 PWDTPDDDVKDFF-KACGK---IVTVEQPKNPDGRSSGTAYVTFDSAAAATKAVELDGQELGGRWLKIMMSFEKPDHARNGEAKVKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANSDVMGRPIRVDYAAPRAPRDDSFGG 582
            PW   +++V+++F  +CG    I+T E P   DGRSSGTA + F S  AA KAVEL+G++  GRWL I  S  KP  A   E   K  GC TVF+GNLSW+IDEDT+++ FGECG+IK VRFA D+ET +F+G+GH+EFY+ E  D AM+LA +D+MGRP+RVDYA  R     SFGG
Sbjct:    1 PWRASEEEVREYFASSCGGVECILTCELPLMNDGRSSGTAIIEFASVEAAAKAVELNGEDFQGRWLNIKYSTPKPIMAPR-EPTQKQDGCVTVFVGNLSWNIDEDTLKEVFGECGEIKMVRFATDKETEDFKGYGHIEFYETEATDKAMELAGTDIMGRPVRVDYANDRRK---SFGG 174          
BLAST of mRNA_Ecto-sp13_S_contig15237.3944.1 vs. uniprot
Match: A0A485LH77_9STRA (Aste57867_21298 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LH77_9STRA)

HSP 1 Score: 200 bits (508), Expect = 4.520e-58
Identity = 95/189 (50.26%), Postives = 132/189 (69.84%), Query Frame = 1
Query:   22 AKSENSKIYLRGLPWDTPDDDVKDFFKACGKIVTVEQPKNPDGRSSGTAYVTFDSAAAATKAVELDGQELGGRWLKIMMSFEKPDHARNGEAKVKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANSDVMGRPIRVDYAAPRAPRDDSFGGGG 588
            A SEN +I++ GLPW   +D++K  F  CG+I ++  P++ +GRS+GT ++TF +AAAA  A+ LDG + GGRW+KI  S EK +H  +     KP GC ++FIGNLSW+IDEDT+R TF  CG I+SVR A DRETG+FRGFGH++F   E VD A+K+  +DV+GR IRV+++  +      F GGG
Sbjct:  186 ATSENCEIFIAGLPWVCDEDELKAVFADCGEITSLRLPQDANGRSTGTGFMTFSTAAAAEAAIALDGSDFGGRWMKIR-SAEKKNHVED-----KPEGCQSIFIGNLSWNIDEDTLRSTFEHCGAIESVRLATDRETGDFRGFGHIDFESSEAVDEAVKMNGTDVLGRAIRVNFSEKK-----QFNGGG 363          
BLAST of mRNA_Ecto-sp13_S_contig15237.3944.1 vs. uniprot
Match: D0MWU0_PHYIT (Nucleolin, putative n=9 Tax=Phytophthora TaxID=4783 RepID=D0MWU0_PHYIT)

HSP 1 Score: 198 bits (504), Expect = 4.080e-57
Identity = 99/183 (54.10%), Postives = 126/183 (68.85%), Query Frame = 1
Query:   43 IYLRGLPWDTPDDDVKDFFKACGKIVTVEQPKNPDGRSSGTAYVTFDSAAAATKAVELDGQELGGRWLKIMMSFEKPDHARNGEAKVKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANSDVMGRPIRVDYAAPRAPRDDSFGGGGR 591
            I++ GLPW   +D+VK+ F  CG++     P   +GRSSGTA+VTF ++ AA  A+ +DGQ+ GGRW+KI  + +K           KP GCT+VFIGNLSW +DE+T+R+TFGECG+I S R A DRETGEFRGFGHV+F   E VD A+KLA S V GR IRV+YA  R    D+ GGGGR
Sbjct:  251 IFIAGLPWSATEDEVKEHFAGCGEVTGARIPLQ-NGRSSGTAFVTFATSEAAEAALAMDGQDFGGRWMKIRTAEKK------NMFDEKPEGCTSVFIGNLSWDVDENTVRETFGECGEILSCRLATDRETGEFRGFGHVDFASTEAVDEAVKLAGSYVNGRAIRVNYAKSR----DNNGGGGR 422          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15237.3944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF99_ECTSI1.030e-14397.94Protein for assembly of pre-ribosomal particles co... [more]
A0A7S2V571_9STRA6.810e-7561.20Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A835ZAT4_9STRA1.580e-6957.53Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3UY59_HETAK4.460e-6457.07Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2RIH6_9STRA6.970e-6454.34Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S3Q248_9STRA1.830e-6353.49Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A1Z5KL43_FISSO1.810e-5953.76Nucleolin n=2 Tax=Fistulifera solaris TaxID=151956... [more]
A0A7S1DDH5_CYCTE2.240e-5853.93Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A485LH77_9STRA4.520e-5850.26Aste57867_21298 protein n=1 Tax=Aphanomyces stella... [more]
D0MWU0_PHYIT4.080e-5754.10Nucleolin, putative n=9 Tax=Phytophthora TaxID=478... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15237contigEcto-sp13_S_contig15237:2458..3948 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score421.4
Seed ortholog evalue2.9e-115
Seed eggNOG ortholog2880.D8LF99
Model size747
KEGG koko:K11294,ko:K12741,ko:K12885
KEGG Pathwayko03040,ko05130,map03040,map05130
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.RNA binding
EggNOG OGsKOG0118@1,KOG0118@2759
Ec32 ortholog descriptionProtein for assembly of pre-ribosomal particles containing 18S rRNA
Ec32 orthologEc-01_004160.1
Cds size747
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko03019,ko03036,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462810.815114-CDS-Ecto-sp13_S_contig15237:2457..26701681462810.815114-CDS-Ecto-sp13_S_contig15237:2457..2670Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15237 2458..2670 -
1681462810.834781-CDS-Ecto-sp13_S_contig15237:3008..31821681462810.834781-CDS-Ecto-sp13_S_contig15237:3008..3182Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15237 3009..3182 -
1681462810.845844-CDS-Ecto-sp13_S_contig15237:3588..39481681462810.845844-CDS-Ecto-sp13_S_contig15237:3588..3948Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15237 3589..3948 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15237.3944.1prot_Ecto-sp13_S_contig15237.3944.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15237 2458..3948 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15237.3944.1

>prot_Ecto-sp13_S_contig15237.3944.1 ID=prot_Ecto-sp13_S_contig15237.3944.1|Name=mRNA_Ecto-sp13_S_contig15237.3944.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=249bp
DAKKKKQAKSENSKIYLRGLPWDTPDDDVKDFFKACGKIVTVEQPKNPDG
RSSGTAYVTFDSAAAATKAVELDGQELGGRWLKIMMSFEKPDHARNGEAK
VKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGF
GHVEFYDGEHVDAAMKLANSDVMGRPIRVDYAAPRAPRDDSFGGGGRGGG
RGGGRGGGRGGGRGGGRGGGRGGGGGGGFNARAKQGIQSFQGTKKSFD*
back to top

mRNA from alignment at Ecto-sp13_S_contig15237:2458..3948-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15237.3944.1 ID=mRNA_Ecto-sp13_S_contig15237.3944.1|Name=mRNA_Ecto-sp13_S_contig15237.3944.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1491bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15237:2458..3948- (Ectocarpus species13 EcNAP12_S_4_19m)
GACGCAAAAAAAAAAAAACAGGCGAAGAGCGAGAACAGCAAAATTTACCT CCGCGGGCTGCCGTGGGATACCCCTGACGACGACGTGAAGGACTTCTTCA AGGCCTGCGGCAAGATCGTGACCGTGGAGCAGCCCAAGAACCCCGATGGG CGCTCGAGCGGCACCGCGTACGTGACGTTCGACAGCGCCGCCGCGGCGAC GAAGGCCGTCGAGCTCGACGGGCAAGAGCTCGGGGGCCGGTGGCTGAAGA TCATGATGTCGTTCGAGAAGCCCGACCACGCGCGCAACGGGGAGGCCAAG GTTAAGCCGGCCGGCTGCACGACGGTGTTCATCGGGAACCTCTCGTGGTC CATCGACGAGGTGCGCTTTTTTTTATTATTTGCGGTCGGTTGATGTCGCG TGATGACTATCCGTATCGTTCCGCGCCTATTTCTTCGGCCGGTGCCTACT TTTGAGCGAAAGTGGTTCATCATTCCATTGTGAGGACAGAGGCACACGAG GTCTCGTTGTCTCGATGTTGGTGTATGGCAGTGCCCCTTGCTCTTCTTTT CGTCGTTGTGATGCTCTCTCCTTGTAGACGTGATGAAACGGTGGAGGAAG CAAAGAAACGACGAGAAAGGACAACGCGCAACCGGGGTGGGCATGAAACG GGGGACCACAGCACATCTTGCGTGTTGCACTCTCCAAATCATTTGTCTGG TCCGAGTGTGTTTGAAATCATCGTCTTGTCTCGCTGTTGCCGTGGGGATC TCGCCTCTTTTGGAAGGACACCATCCGGCAGACGTTCGGCGAGTGCGGCG ACATCAAGAGCGTCCGCTTCGCCGAGGACAGGGAGACGGGAGAGTTCAGG GGATTCGGACACGTGGAGTTCTACGATGGAGAGCACGTAGATGCCGCCAT GAAGCTCGCGAACAGCGATGTCATGGGCCGACCCATTCGCGTAAGTGTTG CTATTGGCAGCCGTGTAGTGTGTCTTTGTGTTGCTATTTTGACATTTACG GTTTGATGGTCGTTTTCGTTTGCACGCTGTGGGAAAGGACGCGGTTCGTC ACGTGTCTCGAATGTACAAGCGTTTCCAGCACCATGACTGTTGAGGTTAT TTCTTGTAGAGTGCATCGGTTGTTGTCCCCGGACGGTTGTGTTCACAGTA CCCCCTGCTTTGTTTGCTTCTGTAGAAGCGTGTGATGCTATGTTTTTCAT CTCTTGGTCTCTTCCCGGCTTCCTCTCAAGAACCACACCGCAAAATCTCC CCTTCCGTTTTTCCGTCATGTGTCTCAGGTTGACTACGCTGCACCCCGGG CACCCCGCGACGACTCGTTCGGTGGGGGCGGCCGTGGCGGTGGACGGGGC GGTGGAAGGGGCGGCGGGCGCGGGGGAGGACGGGGCGGTGGAAGGGGTGG TGGTAGGGGTGGGGGCGGAGGCGGGGGGTTCAACGCCCGCGCGAAGCAGG GCATCCAGTCCTTCCAGGGCACCAAGAAGTCGTTCGATTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15237:2458..3948-

>mRNA_Ecto-sp13_S_contig15237.3944.1 ID=mRNA_Ecto-sp13_S_contig15237.3944.1|Name=mRNA_Ecto-sp13_S_contig15237.3944.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=747bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15237:2458..3948- (Ectocarpus species13 EcNAP12_S_4_19m)
GACGCAAAAAAAAAAAAACAGGCGAAGAGCGAGAACAGCAAAATTTACCT
CCGCGGGCTGCCGTGGGATACCCCTGACGACGACGTGAAGGACTTCTTCA
AGGCCTGCGGCAAGATCGTGACCGTGGAGCAGCCCAAGAACCCCGATGGG
CGCTCGAGCGGCACCGCGTACGTGACGTTCGACAGCGCCGCCGCGGCGAC
GAAGGCCGTCGAGCTCGACGGGCAAGAGCTCGGGGGCCGGTGGCTGAAGA
TCATGATGTCGTTCGAGAAGCCCGACCACGCGCGCAACGGGGAGGCCAAG
GTTAAGCCGGCCGGCTGCACGACGGTGTTCATCGGGAACCTCTCGTGGTC
CATCGACGAGGACACCATCCGGCAGACGTTCGGCGAGTGCGGCGACATCA
AGAGCGTCCGCTTCGCCGAGGACAGGGAGACGGGAGAGTTCAGGGGATTC
GGACACGTGGAGTTCTACGATGGAGAGCACGTAGATGCCGCCATGAAGCT
CGCGAACAGCGATGTCATGGGCCGACCCATTCGCGTTGACTACGCTGCAC
CCCGGGCACCCCGCGACGACTCGTTCGGTGGGGGCGGCCGTGGCGGTGGA
CGGGGCGGTGGAAGGGGCGGCGGGCGCGGGGGAGGACGGGGCGGTGGAAG
GGGTGGTGGTAGGGGTGGGGGCGGAGGCGGGGGGTTCAACGCCCGCGCGA
AGCAGGGCATCCAGTCCTTCCAGGGCACCAAGAAGTCGTTCGATTAA
back to top