mRNA_Ecto-sp13_S_contig15237.3944.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig15237.3944.1 vs. uniprot
Match: D8LF99_ECTSI (Protein for assembly of pre-ribosomal particles containing 18S rRNA n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF99_ECTSI) HSP 1 Score: 421 bits (1082), Expect = 1.030e-143 Identity = 238/243 (97.94%), Postives = 240/243 (98.77%), Query Frame = 1
Query: 16 KQAKSENSKIYLRGLPWDTPDDDVKDFFKACGKIVTVEQPKNPDGRSSGTAYVTFDSAAAATKAVELDGQELGGRWLKIMMSFEKPDHARNGEAKVKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANSDVMGRPIRVDYAAPRAPRDDSFGGGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNARAKQGIQSFQGTKKSFD 744
K+AKSENSKIYLRGLPWDT DDDVKDFFKACGKIVTVEQPKNPDGRSSGTAYVTFDSAAAA KA+ELDGQELGGRWLKIMMSFEKPDHARNGE KVKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANSDVMGRPIRVDYAAPRAPRDDSFGGGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNARAKQGIQSFQGTKKSFD
Sbjct: 275 KKAKSENSKIYLRGLPWDTSDDDVKDFFKACGKIVTVEQPKNPDGRSSGTAYVTFDSAAAAAKAIELDGQELGGRWLKIMMSFEKPDHARNGEPKVKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANSDVMGRPIRVDYAAPRAPRDDSFGGGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNARAKQGIQSFQGTKKSFD 517
BLAST of mRNA_Ecto-sp13_S_contig15237.3944.1 vs. uniprot
Match: A0A7S2V571_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V571_9STRA) HSP 1 Score: 244 bits (623), Expect = 6.810e-75 Identity = 112/183 (61.20%), Postives = 142/183 (77.60%), Query Frame = 1
Query: 40 KIYLRGLPWDTPDDDVKDFFKACGKIVTVEQPKNPDGRSSGTAYVTFDSAAAATKAVELDGQELGGRWLKIMMSFEKPDHARNGEAKVKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANSDVMGRPIRVDYAAPRAPRDDSFGGGG 588
K++++GLPW+T + +KDFFK G I +++QP N DGR+SGTAYV FDS +A KA+ELDG +G RW+K++++ + P + GE KP GC TVFIGNLSW IDEDT+RQTFG+CGDIKSVRFAEDRETG FRGFG+V+FYDG+ D AMKL SD+MGR +R+DY+APR FGGGG
Sbjct: 312 KVFMKGLPWETEEYQIKDFFKGIGTIESIDQPLNKDGRASGTAYVVFDSTESAEKALELDGGTVGERWVKLILARDIPPPPKPGE---KPEGCDTVFIGNLSWDIDEDTVRQTFGDCGDIKSVRFAEDRETGRFRGFGYVQFYDGDATDEAMKLNGSDLMGREVRIDYSAPRG-----FGGGG 486
BLAST of mRNA_Ecto-sp13_S_contig15237.3944.1 vs. uniprot
Match: A0A835ZAT4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAT4_9STRA) HSP 1 Score: 225 bits (574), Expect = 1.580e-69 Identity = 107/186 (57.53%), Postives = 139/186 (74.73%), Query Frame = 1
Query: 37 SKIYLRGLPWDTPDDDVKDFFKACGKIVTVEQPKNPDGRSSGTAYVTFDSAAAATKAVELDGQELGGRWLKIMMSFEKPDHARNG--EAKVKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANSDVMGRPIRVDYAAPRAPRDDSFGGGG 588
+KIY+RGLPW +++V+DFFK CG+I + + P + +GR+SGTA+V F + AA K+ E RWLKI+++ E+ G + K KP GCTTVFIGNLSW +DED +R FGECG+I SVRFA DRETG+F+GFGHVEF DGE VDAA+ +A +++ GRP+RVDYAAPRAPR+ SFGGGG
Sbjct: 100 TKIYVRGLPWSATEEEVRDFFKECGEIESCDLPTDHNGRASGTAFVVFADSDAANKSRE--------RWLKIVLATERAARPSFGAPDKKDKPEGCTTVFIGNLSWDVDEDAVRAAFGECGEIASVRFATDRETGDFKGFGHVEFVDGEGVDAAIDMAGTEIAGRPVRVDYAAPRAPRE-SFGGGG 276
BLAST of mRNA_Ecto-sp13_S_contig15237.3944.1 vs. uniprot
Match: A0A7S3UY59_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UY59_HETAK) HSP 1 Score: 217 bits (553), Expect = 4.460e-64 Identity = 105/184 (57.07%), Postives = 131/184 (71.20%), Query Frame = 1
Query: 40 KIYLRGLPWDTPDDDVKDFFKACGKIVTVEQPKNPDGRSSGTAYVTFDSAAAATKAVELDGQELGGRWLKIMMSFEKPDHARNGEAKVKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANSDVMGRPIRVDYAAPRAPRDDSFGGGGR 591
+I+++GLPW DD+VK+FFK CG I+ + PK+ +GR+SGTAYV+F + KA ELDG G RWLKI + E+P A+ GE +P GC TVF GNLSW IDE+++R+ F +CGDI SVRFAEDRETG+FRGFG+V FYDG D AMKL V GR IR+DY+APR D GGGGR
Sbjct: 332 RIFVKGLPWAATDDEVKEFFKDCGTILDCDMPKDHNGRASGTAYVSFSTDDERNKAYELDGATFGERWLKIEEARERPAAAKPGE---RPEGCDTVFCGNLSWDIDEESLREFFKDCGDISSVRFAEDRETGKFRGFGYVSFYDGACTDEAMKLTGQVVAGREIRLDYSAPR----DRSGGGGR 508
BLAST of mRNA_Ecto-sp13_S_contig15237.3944.1 vs. uniprot
Match: A0A7S2RIH6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RIH6_9STRA) HSP 1 Score: 213 bits (542), Expect = 6.970e-64 Identity = 94/173 (54.34%), Postives = 128/173 (73.99%), Query Frame = 1
Query: 37 SKIYLRGLPWDTPDDDVKDFFKACGKIVTVEQPKNPDGRSSGTAYVTFDSAAAATKAVELDGQELGGRWLKIMMSFEKPDHARNGEAKVKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANSDVMGRPIRVDYAAPR 555
SKI++RGLPW +D++++ F CG+I VEQP N DGRSSGTA + F SA++A AVE++G + GGRWL I ++ +KP ++ KP GC T+FIGNLSW IDED++R+ F ECG+I +VRFAED+ETG+FRGFGHVEF + + A+ +A +D+MGR +RVDYA R
Sbjct: 204 SKIFIRGLPWRASEDEIREHFGGCGEIKEVEQPMNSDGRSSGTALIVFGSASSAESAVEMNGGDFGGRWLDIKLADDKPIQTERAPSE-KPEGCLTIFIGNLSWQIDEDSVREAFQECGEITTVRFAEDKETGDFRGFGHVEFANTDSTTQAVAMAGTDIMGRAVRVDYAQDR 375
BLAST of mRNA_Ecto-sp13_S_contig15237.3944.1 vs. uniprot
Match: A0A7S3Q248_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q248_9STRA) HSP 1 Score: 213 bits (543), Expect = 1.830e-63 Identity = 92/172 (53.49%), Postives = 126/172 (73.26%), Query Frame = 1
Query: 40 KIYLRGLPWDTPDDDVKDFFKACGKIVTVEQPKNPDGRSSGTAYVTFDSAAAATKAVELDGQELGGRWLKIMMSFEKPDHARNGEAKVKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANSDVMGRPIRVDYAAPR 555
K+Y+RGLPW DD+++++F +CG+IV+ E P DGRSSGTA + F + A K + L+G++ GGRWL I + +KP A E KP C TVF GNLSW++DEDT+R+TF ECG+I S+RFA DRETGEF+GFGH+EF+ + DAA+ +A +D+MGR +RVDYAA +
Sbjct: 207 KMYIRGLPWRATDDELREYFASCGEIVSCELPLQSDGRSSGTAEIEFSTKDACEKCMALNGEDFGGRWLSIKYASDKPAFAAR-ETSEKPPDCKTVFCGNLSWNVDEDTLRETFAECGEISSIRFATDRETGEFKGFGHIEFFSSDSTDAAIAMAGTDIMGRAVRVDYAADK 377
BLAST of mRNA_Ecto-sp13_S_contig15237.3944.1 vs. uniprot
Match: A0A1Z5KL43_FISSO (Nucleolin n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KL43_FISSO) HSP 1 Score: 205 bits (521), Expect = 1.810e-59 Identity = 93/173 (53.76%), Postives = 122/173 (70.52%), Query Frame = 1
Query: 28 SENSKIYLRGLPWDTPDDDVKDFFKACGKIVTVEQPKNPDGRSSGTAYVTFDSAAAATKAVELDGQELGGRWLKIMMSFEKPDHARNGEAKVKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANSDVMGRPIRVDYA 546
+E +K+Y+RGLPW + +V++FF ACG I + E P DGRSSGTA + F++ A A+EL+G + GRWL I S KP + E K GC TVF+GNL+W +DEDT+RQ FGECG+I SVRFA DRETGEF+GFGH+EF D E D A+ +A +D++GR +RVDYA
Sbjct: 272 TEGNKVYVRGLPWKAEEHEVQEFFAACGPIKSCEMPLMDDGRSSGTAIIEFETNEGAAAAIELNGGDFQGRWLSIKYSTPKPILSAR-EPTQKQDGCVTVFVGNLAWDVDEDTLRQAFGECGEITSVRFATDRETGEFKGFGHIEFTDTEATDKAIAMAGTDILGRQVRVDYA 443
BLAST of mRNA_Ecto-sp13_S_contig15237.3944.1 vs. uniprot
Match: A0A7S1DDH5_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DDH5_CYCTE) HSP 1 Score: 192 bits (488), Expect = 2.240e-58 Identity = 96/178 (53.93%), Postives = 124/178 (69.66%), Query Frame = 1
Query: 61 PWDTPDDDVKDFF-KACGK---IVTVEQPKNPDGRSSGTAYVTFDSAAAATKAVELDGQELGGRWLKIMMSFEKPDHARNGEAKVKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANSDVMGRPIRVDYAAPRAPRDDSFGG 582
PW +++V+++F +CG I+T E P DGRSSGTA + F S AA KAVEL+G++ GRWL I S KP A E K GC TVF+GNLSW+IDEDT+++ FGECG+IK VRFA D+ET +F+G+GH+EFY+ E D AM+LA +D+MGRP+RVDYA R SFGG
Sbjct: 1 PWRASEEEVREYFASSCGGVECILTCELPLMNDGRSSGTAIIEFASVEAAAKAVELNGEDFQGRWLNIKYSTPKPIMAPR-EPTQKQDGCVTVFVGNLSWNIDEDTLKEVFGECGEIKMVRFATDKETEDFKGYGHIEFYETEATDKAMELAGTDIMGRPVRVDYANDRRK---SFGG 174
BLAST of mRNA_Ecto-sp13_S_contig15237.3944.1 vs. uniprot
Match: A0A485LH77_9STRA (Aste57867_21298 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LH77_9STRA) HSP 1 Score: 200 bits (508), Expect = 4.520e-58 Identity = 95/189 (50.26%), Postives = 132/189 (69.84%), Query Frame = 1
Query: 22 AKSENSKIYLRGLPWDTPDDDVKDFFKACGKIVTVEQPKNPDGRSSGTAYVTFDSAAAATKAVELDGQELGGRWLKIMMSFEKPDHARNGEAKVKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANSDVMGRPIRVDYAAPRAPRDDSFGGGG 588
A SEN +I++ GLPW +D++K F CG+I ++ P++ +GRS+GT ++TF +AAAA A+ LDG + GGRW+KI S EK +H + KP GC ++FIGNLSW+IDEDT+R TF CG I+SVR A DRETG+FRGFGH++F E VD A+K+ +DV+GR IRV+++ + F GGG
Sbjct: 186 ATSENCEIFIAGLPWVCDEDELKAVFADCGEITSLRLPQDANGRSTGTGFMTFSTAAAAEAAIALDGSDFGGRWMKIR-SAEKKNHVED-----KPEGCQSIFIGNLSWNIDEDTLRSTFEHCGAIESVRLATDRETGDFRGFGHIDFESSEAVDEAVKMNGTDVLGRAIRVNFSEKK-----QFNGGG 363
BLAST of mRNA_Ecto-sp13_S_contig15237.3944.1 vs. uniprot
Match: D0MWU0_PHYIT (Nucleolin, putative n=9 Tax=Phytophthora TaxID=4783 RepID=D0MWU0_PHYIT) HSP 1 Score: 198 bits (504), Expect = 4.080e-57 Identity = 99/183 (54.10%), Postives = 126/183 (68.85%), Query Frame = 1
Query: 43 IYLRGLPWDTPDDDVKDFFKACGKIVTVEQPKNPDGRSSGTAYVTFDSAAAATKAVELDGQELGGRWLKIMMSFEKPDHARNGEAKVKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANSDVMGRPIRVDYAAPRAPRDDSFGGGGR 591
I++ GLPW +D+VK+ F CG++ P +GRSSGTA+VTF ++ AA A+ +DGQ+ GGRW+KI + +K KP GCT+VFIGNLSW +DE+T+R+TFGECG+I S R A DRETGEFRGFGHV+F E VD A+KLA S V GR IRV+YA R D+ GGGGR
Sbjct: 251 IFIAGLPWSATEDEVKEHFAGCGEVTGARIPLQ-NGRSSGTAFVTFATSEAAEAALAMDGQDFGGRWMKIRTAEKK------NMFDEKPEGCTSVFIGNLSWDVDENTVRETFGECGEILSCRLATDRETGEFRGFGHVDFASTEAVDEAVKLAGSYVNGRAIRVNYAKSR----DNNGGGGR 422 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15237.3944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig15237.3944.1 >prot_Ecto-sp13_S_contig15237.3944.1 ID=prot_Ecto-sp13_S_contig15237.3944.1|Name=mRNA_Ecto-sp13_S_contig15237.3944.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=249bp DAKKKKQAKSENSKIYLRGLPWDTPDDDVKDFFKACGKIVTVEQPKNPDGback to top mRNA from alignment at Ecto-sp13_S_contig15237:2458..3948- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig15237.3944.1 ID=mRNA_Ecto-sp13_S_contig15237.3944.1|Name=mRNA_Ecto-sp13_S_contig15237.3944.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1491bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15237:2458..3948- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15237:2458..3948- >mRNA_Ecto-sp13_S_contig15237.3944.1 ID=mRNA_Ecto-sp13_S_contig15237.3944.1|Name=mRNA_Ecto-sp13_S_contig15237.3944.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=747bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15237:2458..3948- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |