mRNA_Ecto-sp13_S_contig1523.3941.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1523.3941.1 vs. uniprot
Match: A0A6H5K5B0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5B0_9PHAE) HSP 1 Score: 976 bits (2523), Expect = 0.000e+0 Identity = 602/715 (84.20%), Postives = 615/715 (86.01%), Query Frame = 1
Query: 1 MPARKVTAAATKRKSPGDHPQSPRSKAKKRLVQGDSNHAAAAPDGASSKPVVSRVHKFIVGLAVQLTSTCDDEEVDVDVQVEGLFRAALGALPAGKLKAELMQDEAAAMKTLAAEVASIRFKQXXXXXXXQEGGEIATEKDAGVAAACALVPCTAQLYRQARATAEKQSRGIDGAATDNKPLRALALSPRAPLDLLVNAMRSTSKLDGAAAPVSTTLDATVLGLRNLVGALAADPLAAMSPSGLAFFADRAAVLASSAARSLVARRG----GDSITGDKAALEAEALGLMLRILQVAGLALSAAGSG----------------SSRPADPASWLLLPCAPETSSAWNGEVAATPSDGSLGAPPRNEVDSTPPARISVARLLAHYAASVAACSVGRKAVVKAAQAXXXXXXXXXXXXXXXXXXXGEEEAGDCPDNNKSNNISLSRHLSALCAANLAGSEPGTLEFLRCVGDAVFATDDGGDVSLAARLAPACGRALARLRRPAASPAPTASQFLRRAYAFRVAETLNRSARAASLSSSKPLSRKEAIAPTAIAGRGSGGCASNGSGGGATAVWDFVGDSSAPPALLEFLGRPEAPAAVGQGDAAXXXXXXXXXXXXXXXXXXELLRSSPACAPAALGPLLSAMERLQGGEEGXXXXXXXX-AVGVGGFFVDTGGAVGGTESVILARLGNGAGVAADMDEEEVASVASSAVSDSDGN 2082
MPARKV A TKRKSPGDHP SPRSKAKKRL+QGDSNHAAAA DGASSKP VSR HKFIVGLAVQLTSTCDDEEVDVDVQVEGLFRAAL ALPAGKLKAELMQ+EAAAMKTLAAEV+SIR KQXXXXXX Q+GGE+AT KDAGVAAACALVPCTAQLYRQARATAEKQSRGIDG ATDNKPLRALALSPRAPLDLLVNAM STSKLDGAAAPVSTTLDA V+ LRNLVGALAADPLAAMSPSGLAFFADRAAVLASSA+RSLVARRG GDSITGDKA LE EALGLMLRILQVAGLALSAAG G S RPADPASWLLLPC+PETSSAWNGEVAATPSD S GAPPRNEVDSTPPA+ISVARLLAHYAASVAACSVGRKAVVKAAQ XXXXX GD PDN KSNNIS+SRHLSALCAANLAGSEPGTLEFLRCVGDAVFATDDGGDVSLAA LAPACGRALARLRRPAASPAPTA+QFLRRAYAFRVAE LNRSARAASLS SKP SRKEAIAPTAIAGRGS GCAS+ A WDFVGDSSAPPALLEFLGR EAPAAVGQG A XXXXXXXXXXXXXXXXXX LLRSSPACAPAALGPLLSAMERLQGGEEG AVGVGGFFVDTG G ESV+LARLGNG V DMDEEEVASVASS VS SDGN
Sbjct: 1 MPARKVAVATTKRKSPGDHPPSPRSKAKKRLIQGDSNHAAAAVDGASSKPAVSRAHKFIVGLAVQLTSTCDDEEVDVDVQVEGLFRAALSALPAGKLKAELMQNEAAAMKTLAAEVSSIRSKQXXXXXXPQKGGEVATGKDAGVAAACALVPCTAQLYRQARATAEKQSRGIDGTATDNKPLRALALSPRAPLDLLVNAMGSTSKLDGAAAPVSTTLDAAVICLRNLVGALAADPLAAMSPSGLAFFADRAAVLASSASRSLVARRGDSRGGDSITGDKAGLEVEALGLMLRILQVAGLALSAAGGGTTASGLLRATDDGGCGSCRPADPASWLLLPCSPETSSAWNGEVAATPSDSSPGAPPRNEVDSTPPAQISVARLLAHYAASVAACSVGRKAVVKAAQVAATGEGREGSDDESXXXXXXXXXTGDGPDNKKSNNISVSRHLSALCAANLAGSEPGTLEFLRCVGDAVFATDDGGDVSLAAPLAPACGRALARLRRPAASPAPTAAQFLRRAYAFRVAEALNRSARAASLSLSKPPSRKEAIAPTAIAGRGSSGCASSXXXXXXAAEWDFVGDSSAPPALLEFLGRSEAPAAVGQGSAXXXXXXXXXXXXXXXXXXXXLLRSSPACAPAALGPLLSAMERLQGGEEGGGKTAAAATAVGVGGFFVDTGEMAEGAESVVLARLGNGTDVVPDMDEEEVASVASSTVSGSDGN 715
BLAST of mRNA_Ecto-sp13_S_contig1523.3941.1 vs. uniprot
Match: D7FPB3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPB3_ECTSI) HSP 1 Score: 969 bits (2506), Expect = 0.000e+0 Identity = 619/720 (85.97%), Postives = 634/720 (88.06%), Query Frame = 1
Query: 1 MPARKVTAAATKRKSPGDHPQSPRSKAKKRLVQGDSNHAAAAPDGASSKPVVSRVHKFIVGLAVQLTSTCDDEEVDVDVQVEGLFRAALGALPAGKLKAELMQDEAAAMKTLAAEVASIRFKQXXXXXXXQEGGEIATEKDAGVAAACALVPCTAQLYRQARATAEKQSRGIDGAATDNKPLRALALSPRAPLDLLVNAMRSTSKLDGAAAPVSTTLDATVLGLRNLVGALAADPLAAMSPSGLAFFADRAAVLASSAARSLVA----RRGGDSITGDKAALEAEALGLMLRILQVAGLALSAA----------------GSGSSRPADPASWLLLPCAPETSSAWNGEVAATPSDGSLGAPPRNEVDSTPPARISVARLLAHYAASVAACSVGRKAVVKAAQAXXXXXXXXXXXXXXXXXXXGEEEAGDCPDNNKSNNISLSRHLSALCAANLAGSEPGTLEFLRCVGDAVFATDDGGDVSLAARLAPACGRALARLRRPAASPAPTASQFLRRAYAFRVAETLNRSARAASLSSSKPLSRKEAIAPTAIAGRGSGGCASNGSGGGATA----VWDFVGDSSAPPALLEFLGRPEAPAAVGQGDAAXXXXXXXXXXXXXXXXXXELLRSSPACAPAALGPLLSAMERLQG-GEEGXXXXXXXXAVGVGGFFVDTGGAVGGTESVILARLGNGAGVAADMDEEEVASVASSAVSDSDGNE 2085
MPARKVT AATKRKSPG HP SPRSKAKKRL+QGDSNHAAAAPD ASSKP VSR HKFIVGLAVQLTSTCDDEEVDVDVQVEGLFRAALGALPAGKLKAEL+QDEAA MKTLAAEVASIR KQ Q GGE+AT KDAGVAAACALVPCTAQLYRQARA AEKQSRGIDGAATDNKPLRALALSPRAPLDLL NAM STSKLDGAAAPVSTTLDA V+ LR+LVGALAADPLAAMSPSGLAFFADRAAVLASSAARSLVA RGGDS+TGDKAALE EALGLMLRILQVAGLALSAA GSG RPADPASWLLLPCAPET SAWNGEV+AT D SLG PRNEVDSTPPARISVARLLAHYAASVAACSVGRKAVVKAAQAXXXXXXXXXXXXXXXXXXX GD PD+NKSNNI+LSRHLSALCAANLAGSEPGTLEFLRCVGDAVFATDD G+VSLAA LAPACGRALARLRRPAA+PAPTA+QFLRRAYAFRV ETLNRSARAASLSSSKP SRKEAIAPTAIAGRGS GCA +GS WDFVGDSSAPPALLEFLGRPEAPAAVGQGDAAXXXXXXXXXXXXXXXXXXELLRSSPACAPAALGPLLSAMERLQG GE GXXXXXXXX GFFVDTGGA GG SV+LARLGNGAG+ ADMDEEEVASVASSAVSDSDGNE
Sbjct: 1 MPARKVTEAATKRKSPGGHPPSPRSKAKKRLIQGDSNHAAAAPDCASSKPAVSRAHKFIVGLAVQLTSTCDDEEVDVDVQVEGLFRAALGALPAGKLKAELVQDEAATMKTLAAEVASIRSKQQQS----QNGGEVATGKDAGVAAACALVPCTAQLYRQARAIAEKQSRGIDGAATDNKPLRALALSPRAPLDLLANAMGSTSKLDGAAAPVSTTLDAAVISLRDLVGALAADPLAAMSPSGLAFFADRAAVLASSAARSLVAGRGDTRGGDSVTGDKAALEVEALGLMLRILQVAGLALSAAAGGNTASGLLRATDDAGSGGCRPADPASWLLLPCAPETPSAWNGEVSATSLDSSLGTLPRNEVDSTPPARISVARLLAHYAASVAACSVGRKAVVKAAQAXXXXXXXXXXXXXXXXXXXXXXXTGDGPDSNKSNNIALSRHLSALCAANLAGSEPGTLEFLRCVGDAVFATDDVGNVSLAAPLAPACGRALARLRRPAATPAPTAAQFLRRAYAFRVTETLNRSARAASLSSSKPPSRKEAIAPTAIAGRGSSGCARSGSXXXXXXXXXXAWDFVGDSSAPPALLEFLGRPEAPAAVGQGDAAXXXXXXXXXXXXXXXXXXELLRSSPACAPAALGPLLSAMERLQGVGEGGXXXXXXXXXXXXXGFFVDTGGAAGGARSVVLARLGNGAGIVADMDEEEVASVASSAVSDSDGNE 716 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1523.3941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1523.3941.1 >prot_Ecto-sp13_S_contig1523.3941.1 ID=prot_Ecto-sp13_S_contig1523.3941.1|Name=mRNA_Ecto-sp13_S_contig1523.3941.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=696bp MPARKVTAAATKRKSPGDHPQSPRSKAKKRLVQGDSNHAAAAPDGASSKPback to top mRNA from alignment at Ecto-sp13_S_contig1523:10118..13407- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1523.3941.1 ID=mRNA_Ecto-sp13_S_contig1523.3941.1|Name=mRNA_Ecto-sp13_S_contig1523.3941.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3290bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1523:10118..13407- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1523:10118..13407- >mRNA_Ecto-sp13_S_contig1523.3941.1 ID=mRNA_Ecto-sp13_S_contig1523.3941.1|Name=mRNA_Ecto-sp13_S_contig1523.3941.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2088bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1523:10118..13407- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |