mRNA_Ecto-sp13_S_contig1523.3939.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig1523.3939.1
Unique Name	mRNA_Ecto-sp13_S_contig1523.3939.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig1523.3939.1 vs. uniprot
Match: D7FPB1_ECTSI (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPB1_ECTSI)

HSP 1 Score: 206 bits (523), Expect = 3.600e-67
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1

Query:    1 MFSRVVSLMVCMLAGAAAFMAPSVTVRSVSRPTNSLSMADVTFPGGKKTKANGGAPLKTVAQKAGYKAAYGCEEGKCGTCEHKVNGKKIRLCIGKLPAGAGPFT 312
            MFSRVVSLMVCMLAGAAAFMAPSVTVRSVSRPTNSLSMADVTFPGGKKTKANGGAPLKTVAQKAGYKAAYGCEEGKCGTCEHKVNGKKIRLCIGKLPAGAGPFT
Sbjct:    1 MFSRVVSLMVCMLAGAAAFMAPSVTVRSVSRPTNSLSMADVTFPGGKKTKANGGAPLKTVAQKAGYKAAYGCEEGKCGTCEHKVNGKKIRLCIGKLPAGAGPFT 104

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BLAST of mRNA_Ecto-sp13_S_contig1523.3939.1 vs. uniprot
Match: A0A835ZB30_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB30_9STRA)

HSP 1 Score: 102 bits (253), Expect = 4.950e-26
Identity = 49/77 (63.64%), Postives = 54/77 (70.13%), Query Frame = 1

Query:   82 SVSRPTNSLSMADVTFPGGKKTKANGGAPLKTVAQKAGYKAAYGCEEGKCGTCEHKVNGKKIRLCIGKLPAGAGPFT 312
            SV R  +SL MA   FPGGKK +   G  LK V  KA Y A YGCEEGKCG+CEHKV GKK+RLCIGK+P G GP T
Sbjct:   28 SVVRAPSSLYMAQCIFPGGKKAEGKPGEALKAVVAKAKYDAPYGCEEGKCGSCEHKVGGKKVRLCIGKVPPGNGPHT 104

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BLAST of mRNA_Ecto-sp13_S_contig1523.3939.1 vs. uniprot
Match: A0A7R9UCS5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCS5_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 4.000e-20
Identity = 43/88 (48.86%), Postives = 57/88 (64.77%), Query Frame = 1

Query:   52 AFMAPS-VTVRSVSRPTNSLSM-ADVTFPGGKKTKANGGAPLKTVAQKAGYKAAYGCEEGKCGTCEHKVNGKKIRLCIGKLPAGAGPF 309
            AF+ P  +  R+ ++    +SM  +V FPGGKKT A  G P K VA +AG+K  YGC++G CG CE KVNGKK+R C+ K+PA   P 
Sbjct:   42 AFLPPKGLATRAPAQQRGQMSMNIEVVFPGGKKTTAKAGEPFKNVAARAGFKPTYGCKQGSCGACEIKVNGKKVRPCVAKVPASNKPL 129

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BLAST of mRNA_Ecto-sp13_S_contig1523.3939.1 vs. uniprot
Match: A0A4D9CYU4_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CYU4_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 3.190e-17
Identity = 49/107 (45.79%), Postives = 64/107 (59.81%), Query Frame = 1

Query:    1 MFSRVVSLMVCMLAGAAAFMAPSVTVRSVSR--PTNSLSMADVTFPGGKKTKANGGAPLKTVAQKAGYKAAYGCEEGKCGTCEHK-VNGKKIRLCIGKLPAGAGPFT 312
            M  R+V  ++ ++A   AF AP      + R  P  +  + +V +PG KK KA  G  LK VA +A Y   YGCEEGKCG+CEHK  +GKK R+CI K+P  AGP T
Sbjct:    1 MMLRIVQALILLMA-TTAFFAPHAPSAGIKRGGPVYNGDV-EVIWPGNKKVKAKPGEALKAVAARARYTPNYGCEEGKCGSCEHKGSDGKKYRVCITKVPKIAGPLT 105

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BLAST of mRNA_Ecto-sp13_S_contig1523.3939.1 vs. uniprot
Match: A0A2D5MUZ7_9BACT (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2D5MUZ7_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 2.070e-7
Identity = 21/43 (48.84%), Postives = 29/43 (67.44%), Query Frame = 1

Query:  166 PLKTVAQKAGYKAAYGCEEGKCGTCEHKVNGKKIRLCIGKLPA 294
            PLK + + AG    + CE GKCGTCE++V+G+  RLC   +PA
Sbjct:   45 PLKKIVKAAGAPVKFNCENGKCGTCENRVDGRLTRLCTATVPA 87

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BLAST of mRNA_Ecto-sp13_S_contig1523.3939.1 vs. uniprot
Match: B8C2R5_THAPS (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C2R5_THAPS)

HSP 1 Score: 53.1 bits (126), Expect = 1.400e-6
Identity = 20/43 (46.51%), Postives = 28/43 (65.12%), Query Frame = 1

Query:  169 LKTVAQKAGYKAAYGCEEGKCGTCEHKVNGKKIRLCIGKLPAG 297
            +  V   A  K  Y C+ G+CGTC  K+NG+KIR C+ K+P+G
Sbjct:   89 ISQVCNAARVKVPYNCQNGECGTCTVKMNGRKIRACVSKVPSG 131

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BLAST of mRNA_Ecto-sp13_S_contig1523.3939.1 vs. uniprot
Match: A0A7S4IHS5_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4IHS5_9EUKA)

HSP 1 Score: 52.8 bits (125), Expect = 2.830e-6
Identity = 26/65 (40.00%), Postives = 42/65 (64.62%), Query Frame = 1

Query:  118 DVTFP--GGKKTKANGGAPLKTVAQKAGYKAAYGCEEGKCGTCEHKVNGKK-IRLCIG-KLPAGA 300
            +VTFP  G K  KA  G P+  V ++AG +  + C+ G+CGTC+ ++NG+  +++C G  +P GA
Sbjct:   85 EVTFPQKGNKVVKAKQGEPIGAVCKRAGVRVKFDCKNGRCGTCQVRLNGRSALKVCQGGTVPGGA 149

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BLAST of mRNA_Ecto-sp13_S_contig1523.3939.1 vs. uniprot
Match: R1D5J6_EMIHU (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D5J6_EMIHU)

HSP 1 Score: 48.9 bits (115), Expect = 2.860e-5
Identity = 19/44 (43.18%), Postives = 28/44 (63.64%), Query Frame = 1

Query:  160 GAPLKTVAQKAGYKAAYGCEEGKCGTCEHKVNGKKIRLCIGKLP 291
            G  L+ VA+ AG    Y C EG C TC+ K+ G  +++C+GK+P
Sbjct:   48 GQKLRDVARAAGIPIKYSCNEGTCKTCQVKMGGGMVKVCVGKVP 91

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BLAST of mRNA_Ecto-sp13_S_contig1523.3939.1 vs. uniprot
Match: A0A7S1VCI6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VCI6_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 2.960e-5
Identity = 24/56 (42.86%), Postives = 34/56 (60.71%), Query Frame = 1

Query:  136 GKKTKANGGAPLKTVAQKAGYKAAYGCEEGKCGTCEHKVNGKKIRLCIGKLPAGAG 303
            GK  KA  G  +K VA  A  K +Y C++G CGTC  K+NG+K++ C  ++  G G
Sbjct:   79 GKPAKAVVGQSVKVVANAARVKISYDCQQGDCGTCMIKMNGRKVKAC--QMSIGTG 132

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BLAST of mRNA_Ecto-sp13_S_contig1523.3939.1 vs. uniprot
Match: A0A6U3ZFR1_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3ZFR1_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 3.010e-5
Identity = 19/48 (39.58%), Postives = 27/48 (56.25%), Query Frame = 1

Query:  169 LKTVAQKAGYKAAYGCEEGKCGTCEHKVNGKKIRLCIGKLPAGAGPFT 312
            +  V   A  K  Y C+ G CGTC  K+NG++ + C+ K+PAG    T
Sbjct:   90 ISQVCASARVKVPYNCQNGDCGTCMVKINGRQAKACVSKVPAGKCAIT 137

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig1523.3939.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig1523.3939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15


Match Name	E-value	Identity	Description
D7FPB1_ECTSI	3.600e-67	100.00	2Fe-2S ferredoxin-type domain-containing protein n...	[more]
A0A835ZB30_9STRA	4.950e-26	63.64	2Fe-2S ferredoxin-type domain-containing protein n...	[more]
A0A7R9UCS5_9STRA	4.000e-20	48.86	Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi...	[more]
A0A4D9CYU4_9STRA	3.190e-17	45.79	2Fe-2S ferredoxin-type domain-containing protein n...	[more]
A0A2D5MUZ7_9BACT	2.070e-7	48.84	2Fe-2S ferredoxin-type domain-containing protein n...	[more]
B8C2R5_THAPS	1.400e-6	46.51	2Fe-2S ferredoxin-type domain-containing protein n...	[more]
A0A7S4IHS5_9EUKA	2.830e-6	40.00	Hypothetical protein n=1 Tax=Prymnesium polylepis ...	[more]
R1D5J6_EMIHU	2.860e-5	43.18	2Fe-2S ferredoxin-type domain-containing protein n...	[more]
A0A7S1VCI6_9STRA	2.960e-5	42.86	Hypothetical protein (Fragment) n=1 Tax=Grammatoph...	[more]
A0A6U3ZFR1_9STRA	3.010e-5	39.58	Hypothetical protein n=1 Tax=Skeletonema marinoi T...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig1523	contig	Ecto-sp13_S_contig1523:128..2793 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Model size	312
Hectar predicted targeting category	chloroplast
Exons	3
Ec32 ortholog description	2Fe-2S ferredoxin-type domain
Ec32 ortholog	Ec-15_004070.1
Cds size	312

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462810.4066212-CDS-Ecto-sp13_S_contig1523:127..190	1681462810.4066212-CDS-Ecto-sp13_S_contig1523:127..190	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig1523 128..190 -
1681462810.4175215-CDS-Ecto-sp13_S_contig1523:1384..1519	1681462810.4175215-CDS-Ecto-sp13_S_contig1523:1384..1519	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig1523 1385..1519 -
1681462810.4281054-CDS-Ecto-sp13_S_contig1523:2679..2793	1681462810.4281054-CDS-Ecto-sp13_S_contig1523:2679..2793	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig1523 2680..2793 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig1523.3939.1	prot_Ecto-sp13_S_contig1523.3939.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig1523 128..2793 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig1523:128..2793-
coding sequence from alignment at Ecto-sp13_S_contig1523:128..2793-

protein sequence of mRNA_Ecto-sp13_S_contig1523.3939.1

>prot_Ecto-sp13_S_contig1523.3939.1 ID=prot_Ecto-sp13_S_contig1523.3939.1|Name=mRNA_Ecto-sp13_S_contig1523.3939.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=104bp
MFSRVVSLMVCMLAGAAAFMAPSVTVRSVSRPTNSLSMADVTFPGGKKTK
ANGGAPLKTVAQKAGYKAAYGCEEGKCGTCEHKVNGKKIRLCIGKLPAGA
GPFT

mRNA from alignment at Ecto-sp13_S_contig1523:128..2793-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig1523.3939.1 ID=mRNA_Ecto-sp13_S_contig1523.3939.1|Name=mRNA_Ecto-sp13_S_contig1523.3939.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2666bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1523:128..2793- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCTCCCGCGTAGTCTCCCTCATGGTGTGCATGCTGGCTGGCGCCGC
CGCTTTCATGGCGCCATCGGTGACCGTGCGATCTGTGTCGCGGCCAACAA
ACAGCTTGTCCATGGTGAGTGCGTTAGCTCCTACTTCTGTGACATGTAGG
CTACTTCATCCCCCGCACGTGCGTACATGAAGCTGGGGATTGATGAAACC
CCCTCCCTCTACCGCCACACGCAGGGTTGCCAATCGCCGTTCCGCACATC
GACAGACCTACAGTCTCCACCTTTGTTAAGCGATGCTCTATTGGAAATTC
ATCAAGGTTGACGAAGCTGCTGTTGTGCAGTACCCTCAAAATCGCAACGT
ACGTGAAACACACGCGGGGTTGATAAGCCCATGGAAAAGGCAACACAACC
TATGTGGCGCAGAGTTGTGGATATTGGCCAGGGAAGCGGTTGCCCTGTTC
GTGCGCATAGTATTGCGACCTCTGCCTCAAGCTCTACTCAAACATCGCGC
CAATAGTTGGTTACGCACACATGCGTGTGTGGGCTGTGCATATGTACGGC
AGCATTGAGGGCGCTTACAGCAGCACACATCGAATGTTCACCTGGCACAT
CGAACGTTCGCCCGACTCACATAAGACGTTGCAACTCCGGCATCTACAAA
TCGAGATGAGAGTGTTGCCGCCGGCCCTTGTCGCACGAGGGCATGGCTGC
GAGTGTACCGCGGGCCGCTGGTATTGGCGTACGTAAAACCTGTTCGTTTC
AGCAATTCGCAATTCAGCAAAGGCCAGCGAAACTACAGTCCAGAAGCTGC
TGGCTACAGGTCGGCTTTTTCAGACACCCACCGCAACAGAGAAAGTGGGC
GGAGGAACCATCTACTGCTATACTGCTGCAGCTGCTGCACGTTGCTACAT
GATGTAGAGAGCGTCAAACGATCGCGGTGCATGGGTGCCCGTGTAACCGG
ACTGTACGTTCGCCACAGTCTGATCCTGGCGCATGGCGCGGTCATGGGAG
TGGGGAGGGTCGTCCCGATGTACTATCCTCGTTCGCATGTAGTACGGATC
AGATGTAAATGGACCCATTGGAAGGGGGCTCCAGGGATATCGCGCCTAGG
TATGGATGATGCACCAGACGAAGGTGGACACGAGGCGAGCCGCAAGATGT
CTAACCCTAACCCTCAACTTTGCCGAGTCAAGACTATAATTCAACTAAGT
GTGTTCATTCCTCACCAAACCTGCGAAGACCTTACGATGACCCGCTGACC
CTGAACACCGACACCGACACCTAGGCGGACGTGACCTTCCCGGGAGGAAA
GAAGACCAAGGCCAACGGAGGCGCCCCCCTGAAGACGGTAGCGCAGAAGG
CGGGCTACAAGGCAGCGTACGGCTGCGAGGAGGGCAAGTGCGGGACGTGC
GAGCACAAGGTGACGCCTCGACCAACACTGCCTGTCTCGCACGCGTGGTA
TGGGATTTTGCAACCCACCCCCTTCGTCTGTGGTTATGTTTCAAACGGGA
AGTCTTTCTTTGATGGTACTTTGCTTTGGACAAAGCATAAGCTGTAACTG
CTGCGATCATAGTGGCAATCGCATGGATATCGAGATGCTATTGCCCGTGC
GATAATGGTTTGCATTTTATGTAGTCCCATCAAGCCTTGCGACGAGTACA
CACACATTTACGGATGGGAGAGAGCCTCGGCGGCGACGGGGAGGGCAAGT
GCCTGTTTTGCGAGCACGAAGTAACAGCAGGAGTACGGCTACGTAGCGCT
TGACGACTGCATCGAGTTAGGCGTTACAGAGGAGGAAGCGTCTGCTGTCG
CTGCTGCGGTATCACTGCATTCGTAAATGCACGTGGAGAGTTTTGTAGAA
GCCGAAATCAAACCATTAGACTAGTCTCCTGAAGTGTCCACCCTTGCAAA
AACCACGAAGATTCAAAGCGCACAAGGCGATACCAGTGTTCCTCTGTTGC
GGAGAGGGCGAGCGAGTGCCTGTCCTGCGAGCCCCAGGCCGCTGAATACC
TCACGGAGATGGTCCACCTAGCTTCGAGGCACACAGGTGCATAGATCTCG
GTACACCACCCCCACTGCGGCGTCTACGACGCCTCGCCCCTATGGAAAAG
TAGCGTGCCCAAAACCGTGCGGTAGGTGTACCGGACGCCTTTGGAGAAAT
ACGTACATGGTCAGCTTTACAGGAAGGAGCACGGTCATATTCCGCGACCA
AGCAGCCGAAGGAGAATTTAATTGATCCGAACTGTCGTCCCGCATGTGGT
TATGGCCATCTTACAGATGTTTGGAGGCATAACCTCTTGTGTACCGTATA
TGACACAAGATAACACACACCCTGAATCAATTTTCAAAGCTCGATTACTC
CATGACGAAGAGGATGCATATGAGAAACAATACGTTTCTGAAGAGCTCTC
GACGAGACGGTTCCAACGCCGCCGTTTTCGGCGCTGTGAGTCTTCCGGCT
GTCGAGGAATCGAGCTTTGAATATCGGTCAAGGGGGTGTGTTATCTTGTG
TCAAATACGGTACCCATGCCGTCTGACGCGAAAAATCCTGACGTTTGTTT
GGTTTTTGCGCATATTCTGCGTGTGTTTCGGTGTGCCGGTTATGTCTTGG
CAGGTGAACGGCAAGAAGATCAGGCTGTGCATCGGCAAGCTTCCCGCCGG
CGCCGGCCCATTCACG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1523:128..2793-

>mRNA_Ecto-sp13_S_contig1523.3939.1 ID=mRNA_Ecto-sp13_S_contig1523.3939.1|Name=mRNA_Ecto-sp13_S_contig1523.3939.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1523:128..2793- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCTCCCGCGTAGTCTCCCTCATGGTGTGCATGCTGGCTGGCGCCGC
CGCTTTCATGGCGCCATCGGTGACCGTGCGATCTGTGTCGCGGCCAACAA
ACAGCTTGTCCATGGCGGACGTGACCTTCCCGGGAGGAAAGAAGACCAAG
GCCAACGGAGGCGCCCCCCTGAAGACGGTAGCGCAGAAGGCGGGCTACAA
GGCAGCGTACGGCTGCGAGGAGGGCAAGTGCGGGACGTGCGAGCACAAGG
TGAACGGCAAGAAGATCAGGCTGTGCATCGGCAAGCTTCCCGCCGGCGCC
GGCCCATTCACG