mRNA_Ecto-sp13_S_contig15213.3929.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig15213.3929.1 vs. uniprot
Match: D8LRS0_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRS0_ECTSI) HSP 1 Score: 178 bits (452), Expect = 3.090e-45 Identity = 88/120 (73.33%), Postives = 102/120 (85.00%), Query Frame = 1
Query: 22 MHLFPKRASLRGFESEIFKLVSYGATPQQWAEWLRVPLGHAAGRGNLDLVNMLIEAGADGSA*WRGCRGRTLLDAAALGGSAGVIAALLRAGARPDVKVVSMSPKRSALYVSTLCSHVHA 381
M+++PKR L+G ESEI+KLVSYGATPQQW EWLRVPL HAA RGNL+LVN L+EAGADGSA WRGC RTL+DAAALGGS V++ALLRAGA+PDV VS+S KRSALY +T+C H HA
Sbjct: 1 MYVYPKRRLLQGMESEIWKLVSYGATPQQWKEWLRVPLEHAAARGNLNLVNSLLEAGADGSAGWRGCLDRTLIDAAALGGSEPVVSALLRAGAQPDVNTVSISSKRSALYTATVCGHEHA 120
BLAST of mRNA_Ecto-sp13_S_contig15213.3929.1 vs. uniprot
Match: D8LRZ8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRZ8_ECTSI) HSP 1 Score: 174 bits (442), Expect = 7.300e-44 Identity = 87/143 (60.84%), Postives = 106/143 (74.13%), Query Frame = 1
Query: 22 MHLFPKRASLRGFESEIFKLVSYGATPQQWAEWLRVPLGHAAGRGNLDLVNMLIEAGADGSA*WRGCRGRTLLDAAALGGSAGVIAALLRAGARPDVKVVSMSPKRSALYVSTLCSHVHAREVCFSLGRM*TLRTPCVGVASC 450
MH++P+R +G SEI+KLVS+ ATPQQW EWLRVPL HAA RGNL+LVN L+EAGADGSA W+GCRGRTL+DAAALGGS V++ALLRAGA+PDV VVS+S KRS+LY +T+C H A + G P + C
Sbjct: 1 MHVYPERRLFQGMGSEIWKLVSHSATPQQWKEWLRVPLEHAAARGNLNLVNSLLEAGADGSAGWKGCRGRTLIDAAALGGSEPVVSALLRAGAQPDVNVVSVSSKRSSLYTATVCGHKDAARRLITAGADVNFEDPTGSILGC 143
BLAST of mRNA_Ecto-sp13_S_contig15213.3929.1 vs. uniprot
Match: D8LS36_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS36_ECTSI) HSP 1 Score: 169 bits (428), Expect = 9.210e-42 Identity = 84/120 (70.00%), Postives = 100/120 (83.33%), Query Frame = 1
Query: 22 MHLFPKRASLRGFESEIFKLVSYGATPQQWAEWLRVPLGHAAGRGNLDLVNMLIEAGADGSA*WRGCRGRTLLDAAALGGSAGVIAALLRAGARPDVKVVSMSPKRSALYVSTLCSHVHA 381
MH++P+R L+G ESEI+KLVSY ATPQQW EWLR+PL HAA RGNL+LV+ L+ AGADGSA WRGCRGRTL+DAAALGGS V++ LLRAGA+ DV VVS+S KRSALY +T+C H A
Sbjct: 1 MHVYPERRLLQGMESEIWKLVSYSATPQQWKEWLRMPLEHAAARGNLNLVSSLLGAGADGSAGWRGCRGRTLIDAAALGGSEPVVSTLLRAGAQWDVNVVSVSSKRSALYTATMCGHEDA 120
BLAST of mRNA_Ecto-sp13_S_contig15213.3929.1 vs. uniprot
Match: A0A6H5KNQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ1_9PHAE) HSP 1 Score: 159 bits (403), Expect = 5.980e-40 Identity = 84/144 (58.33%), Postives = 103/144 (71.53%), Query Frame = 1
Query: 22 MHLFPKRASLRGFESEIFKLVSYGATPQQWAEWLRVPLGHAAGRGNLDLVNMLIEAGADGSA*WRGCRGRTLLDAAALGGSAGVIAALLRAGARPDVKVVSMSPKRSALYVSTLCSHVHAREVCFSLGRM*TLRTPCVGVASCT 453
MH+FP+R SL G SE+FKLVSYGA+ +QWAEWLRVPL HAA RGN +LV L++AGAD A WRGCRGRTLLDAAALGG+A V++AL+R GA DV V++S +RSAL+ +T C H A + G R P VA C+
Sbjct: 1 MHIFPERTSLDGLGSEVFKLVSYGASREQWAEWLRVPLEHAASRGNPNLVERLLQAGADAGAGWRGCRGRTLLDAAALGGNADVMSALIRGGAGADVNKVTVSSRRSALHTATCCGHEAAAKRLVLTGADVNFRDP---VAKCS 141
BLAST of mRNA_Ecto-sp13_S_contig15213.3929.1 vs. uniprot
Match: A0A6H5K1F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F4_9PHAE) HSP 1 Score: 161 bits (408), Expect = 1.310e-38 Identity = 183/605 (30.25%), Postives = 245/605 (40.50%), Query Frame = 1
Query: 22 MHLFPKRASLRGFESEIFKLVSYGATPQQWAEWLRVPLGHAAGRGNLDLVNMLIEAGADGSA*WRGCRGRTLLDAAALGGSAGVIAALLRAGARPDVKVVSMSPKRSALYVSTLCSHVHAREVCFSLGRM*TLRTPCVGVASCTRSRSEGTNNW*TTC**VVQIHSCVE----DGSTALLSARSCPR-RAAGDRVPFIIARDG---------------DKHALDCDGDSALIWAAWNGL*P*LRLFYRL---VPMSTFGGVQ---TASRRSTTLLRLGMFLS------SKRSLNTG*MWILAMVTGVS-----------------PSIVQLNPIR*VL*MQSSRPGRTPSASRSKGGH----RC---STPHCSTKKAKR-CQLFCDMELSLAP---------LMISDSRH*TRFTFASTPA*S-GTWICCCDGERRRQPWTTTGRHRGRSSMNFHLLASAAP*LMSSAYDFY*NTRAPADRAWRRRCWMVMLRSRCTKAEANGYDVGGETRVYSNQAGGRPGKSLKNDNTDGKGALGHHHDINGQPCKYG----GKVGTGGG--------------AKRAGLSGIVTFPVDLEVKDAFHTVVGFM 1581
MHL+PKRA L G E EIFKL+ +GATP+QWAEWLR PL HAA RGNL LV L+ AGA+G A WRGCRGRT+LDAAALGG+ V+A LL +G DV VVS+S +RSAL+V+++C H A + +A +R + + C V +H VE D LL +CP R R P +A D ALD G S L+ A+ G + R + + GG TA + + +G+ + + R+ +T + L G P++ P+ V M +S A +GG+ C S H + R D+ L L SD T + + A G+ C G R T R R LLA RAPADR WRRRCW+VMLR+R + G R + G++L H + +G K G G VG G G AG G+V V LE ++ F T+V F+
Sbjct: 1 MHLYPKRALLEGAELEIFKLLYFGATPEQWAEWLRAPLEHAAARGNLGLVERLLNAGANGGAGWRGCRGRTMLDAAALGGNPDVVATLLASGCASDVNVVSLSSRRSALHVASVCGHEAAAKKLI--------------IAGADVNRVDPGD----AC---VSLHVAVEGRHGDLVDLLLIGGACPNSRTMSGRTPLHLAAASGNNRVVSTLLGNAMTDVDALDSRGVSPLMVASEGGHCSTVEALLRAGADMNLRHAGGAHLGMTAMDVAVSKGHVGVIEAIVENGGNVRATDTYGLTALHHARGAQAVDVLLDAGADVNAKACPALHGFTPLS-VCVMDNSC--EAVVALLKRGGNVNDTNCGGLSALHLTCGSLSRGMDRMVDLLLRWGASETAVNKNGLTPSDILKVTTAEYHARDAGGDGSATRCVGGSATRHDSLTKEIQRARV-----LLA-----------------RAPADRTWRRRCWLVMLRARAERGRGAPSSGSGSDRTEA-----ATGRNLP-----------RHEEADGDNSKVGKTDAGAVGEGSGPTDGERGRDGRATRGAAAGEGGLVPALVGLESEEVFRTIVCFL 543
BLAST of mRNA_Ecto-sp13_S_contig15213.3929.1 vs. uniprot
Match: A0A6H5JY41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY41_9PHAE) HSP 1 Score: 157 bits (398), Expect = 1.570e-37 Identity = 103/238 (43.28%), Postives = 127/238 (53.36%), Query Frame = 1
Query: 22 MHLFPKRASLRGFESEIFKLVSYGATPQQWAEWLRVPLGHAAGRGNLDLVNMLIEAGADGSA*WRGCRGRTLLDAAALGGSAGVIAALLRAGARPDVKVVSMSPKRSALYVSTLCSHVHAREVCFSLGRM*TLRTPCVGVASCTRSRSEGTNNW*TTC**VVQIHSCVEDGSTAL----LSARSCPR-RAAGDRVPFIIAR-------------DGDKH--ALDCDGDSALIWAAWNG 675
MHL PKRA L E EIFKL+S+GATP++WAEWLR P HAA RGN+ LV L+EAGADG A WRGCR RT+LDAAALGG+A V+ LLR+ PDV VVS+S KRSAL+++ SH A +A R + N + H E G L L+ +CP R+ R P +A D + H ALD DG S L+ A+ NG
Sbjct: 1 MHLDPKRALLEEAELEIFKLLSFGATPERWAEWLRAPQEHAAARGNIGLVERLLEAGADGGAGWRGCRSRTMLDAAALGGNADVVTKLLRSECVPDVNVVSVSSKRSALHLAVTWSHEAAARTLM--------------IAGADNHRVDPVNRY-------TPFHVAAEGGHDDLVDNYLTGGACPNSRSRVGRTPLHLADGLGNNRDVSALLGDANTHMDALDNDGFSPLMLASRNG 217
BLAST of mRNA_Ecto-sp13_S_contig15213.3929.1 vs. uniprot
Match: D7FXA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA8_ECTSI) HSP 1 Score: 151 bits (381), Expect = 2.300e-35 Identity = 169/554 (30.51%), Postives = 235/554 (42.42%), Query Frame = 1
Query: 40 RASLRGFESEIFKLVSYGATPQQWAEWLRVPLGHAAGRGNLDLVNMLIEAGADGSA*WRGCRGRTLLDAAALGGSAGVIAALLRAGARPDVKVVSMSPKRSALYVSTLCSHVHAREVCFSLGR--------------M*TLRTPCVGVASCTRSRSEGTNNW*TTC**VVQ--------IHSCVEDG----STALLSARSCPRRAAGDRVPFIIARDGDKHALDCDGDSALIWAA-WNGL*P*LRLFYRLVPMST----FGGVQTASRRSTT-----LLRLGMFLSSKRSLNTG*MWI-LAMVTGVSPSIVQLNPIR*VL*MQSSRPGRTPSASRSKGGHRCSTPHCSTKKAKRC-QLFCDMELSLAPLMISDSRH*TRFTFASTPA*SGTWICCCDGERRRQPWTTTGRHRGRSSMNFHLLASAAP*LMSSAYDFY*NTRAPADRAWRRRCWMVMLRSRCTKAEANGYDVGGETRVYSNQAGGRPGKSLKNDNTDGKGALGHHHDINGQPCKYGGKVGTGGG--AKRAGLSGIVTFPVDLEVKDAFHTVVGFM 1581
+ S G E EIFK+VS GATP+QWA WLR PL HAA GNL+LV+ L++AG DG A WRGCRGR+LLDAAALGG+AGV++ALL+AG PDV VV+ S RSALY S L H A G ++ C + N +V+ +H+ + G ++ LLS+ S + V ++A D D D SAL++AA + + L V ++ + + A++ ++T LL G + K S G + A TG + +++ L R + H +T L +ME AP D+ AS A D +R Q + R G S + L A L RAPADR WRRRCW++MLR R K + G R + G G L G G G +++ + G G GGG A L G+V+ V LE F T++G++
Sbjct: 5 QTSPSGEEVEIFKIVSEGATPEQWARWLRAPLEHAAASGNLNLVDRLLKAGVDGKAGWRGCRGRSLLDAAALGGNAGVMSALLQAGCGPDVNVVASSTGRSALYQSVLGKHEAAARKLILAGADVNFVDRADKAGPLFAAVKAGCDDLVGNLLMAGANPNV-------IVRHSFGHGTPLHAAAKQGLANTASVLLSSPSTDKNGHVATVKVLLAAGADTDIRDLDSHSALVFAAQYERIDVMKALLEHGVDVNVGEDHWNPLHWAAQFNSTGCITVLLDAGADIDVKCSFLDGRTSLHFAAETGNNEALLALL-------------------------RRGANVHQTTDDGSTALHLVSEME-GHAP---DDTVDILLRRGASEQAVDRNGKAPVDLFKRVQRRFQSARPMGDSE--WPELERAIELL----------ARAPADRTWRRRCWLIMLRERTNKERT----IHGGRRRKGKKVGNGEGLLL------GDGKRGGSNNVR----RSGRSRGRGGGRAAVEVDLRGLVSVLVCLESDGVFRTILGYI 496
BLAST of mRNA_Ecto-sp13_S_contig15213.3929.1 vs. uniprot
Match: A0A6H5JW91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW91_9PHAE) HSP 1 Score: 140 bits (352), Expect = 2.570e-34 Identity = 72/124 (58.06%), Postives = 85/124 (68.55%), Query Frame = 1
Query: 1 STHAALQMHLFPKRASLRGFESEIFKLVSYGATPQQWAEWLRVPLGHAAGRGNLDLVNMLIEAGADGSA*WRGCRGRTLLDAAALGGSAGVIAALLRAGARPDVKVVSMSPKRSALYVSTLCSH 372
S H + H++PKR L G E EIFKLVSY ATP+QW EWL+VPL AA GN DL L+EAGA GSA WRGCR R+L+DAAA+GG+ V++ L AGA PDV+VVS S K SAL H
Sbjct: 37 SDHTDTKTHIYPKRVLLEGLEIEIFKLVSYSATPEQWKEWLQVPLERAAALGNRDLFYKLLEAGAYGSAGWRGCRDRSLIDAAAVGGNVDVVSGFLEAGAEPDVQVVSWSSKTSALCTPVRFGH 160
BLAST of mRNA_Ecto-sp13_S_contig15213.3929.1 vs. uniprot
Match: D8LBP9_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP9_ECTSI) HSP 1 Score: 146 bits (368), Expect = 1.450e-33 Identity = 72/115 (62.61%), Postives = 85/115 (73.91%), Query Frame = 1
Query: 28 LFPKRASLRGFESEIFKLVSYGATPQQWAEWLRVPLGHAAGRGNLDLVNMLIEAGADGSA*WRGCRGRTLLDAAALGGSAGVIAALLRAGARPDVKVVSMSPKRSALYVSTLCSH 372
++P+R L G E IF L+SYGATP+QW EWLR PL HAA RG LV L+ AGADG A W GCRGRTLLDAAALGG+ V+ LLRAG PDV VVS+S +RSAL++S +C H
Sbjct: 1 MYPRRPVLEGAEVGIFTLLSYGATPEQWREWLRAPLEHAAARGEFVLVEKLLNAGADGGAGWSGCRGRTLLDAAALGGNPDVVTTLLRAGCLPDVNVVSVSSRRSALHLSAVCGH 115
BLAST of mRNA_Ecto-sp13_S_contig15213.3929.1 vs. uniprot
Match: D8LE08_ECTSI (Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE08_ECTSI) HSP 1 Score: 144 bits (364), Expect = 1.710e-33 Identity = 143/466 (30.69%), Postives = 190/466 (40.77%), Query Frame = 1
Query: 22 MHLFPKRASLRGFESEIFKLVSYGATPQQWAEWLRVPLGHAAGRGNLDLVNMLIEAGADGSA*WRGCRGRTLLDAAALGGSAGVIAALLRAGARPDVKVVSMSPKRSALYVSTLCSHVHAREVCFSLGRM*TLRTP---CVGV------------------ASCTRSRSEGTNNW*TTC**VVQIHSCVEDGSTALLSARSCPRRAAGDRVPFIIARDGDKHALDCDGDSALIWAAWNGL*P*LRLFYRLVPMSTFGGVQTASRRSTT--LLRLGMFLSSKRSLNTG*MWILAMVTGVSPSIVQLNPIR*VL*MQSSRPGRTPSASRSKGGHRCSTPHCSTKKAKRCQLFCDMELSLAPLMISDSRH*TRFTFASTPA*SGTWICCCDGERRRQPWTTTGRHRGRSSMNFHLLASAAP*LMSSAYDFY*NT---------------RAPADRAWRRRCWMVMLRSR 1305
MHL+PKRA L G E EIFKL+S+ ATP+QWA+WLR PL HAA RGN+ LV L+EAGADG A WRGCRGRT+LDAA +G PDV VVS+S KRSAL+++ +C H A G P CV +C SR+ +H G++ ++S GD I ARD D H S L+ A+ NG RST LLR G + + +G + +A + +V + G P + + GH KR F + D+ + +A SGT D R T RG + ++ +AA ++S+ N+ RAPADRAWRRRCW+VMLR+R
Sbjct: 1 MHLYPKRALLEGAEVEIFKLLSFCATPEQWADWLRAPLEHAAARGNIGLVERLLEAGADGRAGWRGCRGRTMLDAAXXXXXXXXXXXXXXSGCAPDVNVVSVSSKRSALHLAVVCGHEAAARTLMIAGANIRRVDPGDQCVPFHVAAEGGHGDLVGNLLIGGACPNSRTRFGR---------TPLHVAAAVGNSRVVST------LLGDTSTSINARDNDLH-------SPLMLASANG------------------------HRSTVEALLRAGADTTLR--CYSGGVSDMAALEMAGGEVVDVXXXXXXXXXXXXAGGSIPLHASAVHGH----DETMVALLKREGNFDEQ----------DNAGRSALHWACIGCLSGTGRTAVDLLLRWGASETALDTRGETPSDYLRRGAAA---VASSNVTPRNSEKMQREMQRALVLLARAPADRAWRRRCWLVMLRAR 401 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15213.3929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig15213.3929.1 >prot_Ecto-sp13_S_contig15213.3929.1 ID=prot_Ecto-sp13_S_contig15213.3929.1|Name=mRNA_Ecto-sp13_S_contig15213.3929.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=226bp MGGVEWSLTVVETLLQTGADVNVRRRPNGISALDNAATAGHVSILKAILEback to top mRNA from alignment at Ecto-sp13_S_contig15213:2..2295+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig15213.3929.1 ID=mRNA_Ecto-sp13_S_contig15213.3929.1|Name=mRNA_Ecto-sp13_S_contig15213.3929.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2294bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15213:2..2295+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15213:2..2295+ >mRNA_Ecto-sp13_S_contig15213.3929.1 ID=mRNA_Ecto-sp13_S_contig15213.3929.1|Name=mRNA_Ecto-sp13_S_contig15213.3929.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=678bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15213:2..2295+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |