mRNA_Ecto-sp13_S_contig1519.3910.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1519.3910.1
Unique NamemRNA_Ecto-sp13_S_contig1519.3910.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1519.3910.1 vs. uniprot
Match: A0A7S3XZ48_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZ48_HETAK)

HSP 1 Score: 128 bits (322), Expect = 1.160e-35
Identity = 55/87 (63.22%), Postives = 70/87 (80.46%), Query Frame = 1
Query:    4 GVPADVRDSHGNTILIVACQNGHKRALKAALRHGADPDASNARGNTALHYCYAFGYEGTLGRYLMDKGADSSIRNRNGLVCYEGISR 264
            G+P ++RD +GNT+L VACQNGHKRA KAALR GAD +A N RGNT LH+C+ +GY  TLG+YL+ KGAD +IRN +G+ CYEGI +
Sbjct:   38 GMPVNIRDQYGNTVLCVACQNGHKRAAKAALRRGADINARNYRGNTPLHFCFTYGYGETLGQYLISKGADPTIRNNDGVTCYEGIRK 124          
BLAST of mRNA_Ecto-sp13_S_contig1519.3910.1 vs. uniprot
Match: A0A7S2MBB0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MBB0_9STRA)

HSP 1 Score: 120 bits (300), Expect = 4.340e-31
Identity = 51/86 (59.30%), Postives = 67/86 (77.91%), Query Frame = 1
Query:    1 RGVPADVRDSHGNTILIVACQNGHKRALKAALRHGADPDASNARGNTALHYCYAFGYEGTLGRYLMDKGADSSIRNRNGLVCYEGI 258
            +G+P ++RD  GNTIL ++CQNG+KR  KAALR GA+ +A N RGNT LH+CY +GY  TLG+YL+ KG D+SI NR GL C+EG+
Sbjct:  141 QGIPVNIRDKTGNTILAISCQNGNKRVAKAALRRGANINAQNYRGNTPLHFCYTYGYGDTLGQYLISKGGDTSILNRAGLTCFEGL 226          
BLAST of mRNA_Ecto-sp13_S_contig1519.3910.1 vs. uniprot
Match: D8LT35_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT35_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 1.070e-30
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 1
Query:    1 RGVPADVRDSHGNTILIVACQNGHKRALKAALRHGADPDASNARGNTALHYCYAFG 168
            +GVPADVRDSHGNTILIVACQNGHKRALKAALRHGADPDASNARGNTALHYCYAFG
Sbjct:  194 QGVPADVRDSHGNTILIVACQNGHKRALKAALRHGADPDASNARGNTALHYCYAFG 249          
BLAST of mRNA_Ecto-sp13_S_contig1519.3910.1 vs. uniprot
Match: A0A5A8E191_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E191_CAFRO)

HSP 1 Score: 120 bits (302), Expect = 1.290e-30
Identity = 56/86 (65.12%), Postives = 65/86 (75.58%), Query Frame = 1
Query:    1 RGVPADVRDSHGNTILIVACQNGHKRALKAALRHGADPDASNARGNTALHYCYAFGYEGTLGRYLMDKGADSSIRNRNGLVCYEGI 258
            RGVP D+ D+HGNTILIVACQNG KR  K ALR G D DA N+RGNTALH+CYA+GY   LG YL+ KGAD + RN  G + +EGI
Sbjct:  219 RGVPVDIADAHGNTILIVACQNGLKRVAKLALRRGCDIDARNSRGNTALHFCYAYGYGEGLGAYLVSKGADPAARNDAGFLPHEGI 304          
BLAST of mRNA_Ecto-sp13_S_contig1519.3910.1 vs. uniprot
Match: A0A7S1C915_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C915_9STRA)

HSP 1 Score: 115 bits (287), Expect = 3.640e-30
Identity = 48/86 (55.81%), Postives = 65/86 (75.58%), Query Frame = 1
Query:    1 RGVPADVRDSHGNTILIVACQNGHKRALKAALRHGADPDASNARGNTALHYCYAFGYEGTLGRYLMDKGADSSIRNRNGLVCYEGI 258
            RGVP ++RD HGNTIL +ACQNG K+  K ALR GAD +  N +GNT LHYC+ +G+  TLG+Y++ KGAD ++RN  GL C++G+
Sbjct:   48 RGVPVNLRDKHGNTILTIACQNGLKKMAKVALRAGADINTRNYKGNTPLHYCFTYGWGDTLGQYMLSKGADGTLRNDLGLTCFQGL 133          
BLAST of mRNA_Ecto-sp13_S_contig1519.3910.1 vs. uniprot
Match: A0A0W8D3U4_PHYNI (Histone-lysine N-methyltransferase n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8D3U4_PHYNI)

HSP 1 Score: 115 bits (287), Expect = 1.900e-29
Identity = 50/88 (56.82%), Postives = 69/88 (78.41%), Query Frame = 1
Query:    1 RGVPADVRDSHGNTILIVACQNGHKRALKAALRHGADPDASNARGNTALHYCYAFGYEGTLGRYLMDKGADSSIRNRNGLVCYEGISR 264
            +GVP + RD+ GNT+L +ACQNG KR  K ALR GA+ ++ N RGNTALH+C+A+GY  +LG YL+ KGAD++I N +G+VCY GI++
Sbjct:  103 QGVPVNSRDAFGNTLLTIACQNGLKRITKLALRRGANINSQNNRGNTALHFCFAYGYGDSLGAYLISKGADTTIENDDGMVCYYGITQ 190          
BLAST of mRNA_Ecto-sp13_S_contig1519.3910.1 vs. uniprot
Match: A0A1V9Z1N7_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z1N7_9STRA)

HSP 1 Score: 114 bits (286), Expect = 2.180e-29
Identity = 49/86 (56.98%), Postives = 65/86 (75.58%), Query Frame = 1
Query:    1 RGVPADVRDSHGNTILIVACQNGHKRALKAALRHGADPDASNARGNTALHYCYAFGYEGTLGRYLMDKGADSSIRNRNGLVCYEGI 258
            +G+P ++ D+HGN++L +ACQNG KR  K  LRHGA+ +  N RGNT LHYC+A+GY  TLG YL+ KGAD ++RN +GL CY GI
Sbjct:   98 KGLPVNLPDAHGNSLLTIACQNGLKRLAKMLLRHGANINLKNRRGNTPLHYCFAYGYGETLGAYLISKGADVTLRNEDGLECYYGI 183          
BLAST of mRNA_Ecto-sp13_S_contig1519.3910.1 vs. uniprot
Match: G4Z035_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4Z035_PHYSP)

HSP 1 Score: 114 bits (284), Expect = 7.860e-29
Identity = 50/88 (56.82%), Postives = 68/88 (77.27%), Query Frame = 1
Query:    1 RGVPADVRDSHGNTILIVACQNGHKRALKAALRHGADPDASNARGNTALHYCYAFGYEGTLGRYLMDKGADSSIRNRNGLVCYEGISR 264
            +GVP + RD  GNT+L +ACQNG KR  K ALR GA+ ++ N RGNTALH+C+++GY  +LG YL+ KGAD++I N +GLVCY GI++
Sbjct:  122 QGVPVNSRDQFGNTLLSIACQNGLKRIAKLALRRGANINSQNNRGNTALHFCFSYGYGDSLGAYLISKGADTTIENDDGLVCYYGIAQ 209          
BLAST of mRNA_Ecto-sp13_S_contig1519.3910.1 vs. uniprot
Match: W2H644_PHYPR (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2H644_PHYPR)

HSP 1 Score: 115 bits (287), Expect = 9.910e-29
Identity = 50/88 (56.82%), Postives = 69/88 (78.41%), Query Frame = 1
Query:    1 RGVPADVRDSHGNTILIVACQNGHKRALKAALRHGADPDASNARGNTALHYCYAFGYEGTLGRYLMDKGADSSIRNRNGLVCYEGISR 264
            +GVP + RD+ GNT+L +ACQNG KR  K ALR GA+ ++ N RGNTALH+C+A+GY  +LG YL+ KGAD++I N +G+VCY GI++
Sbjct:  176 QGVPVNSRDAFGNTLLTIACQNGLKRITKLALRRGANINSQNNRGNTALHFCFAYGYGDSLGAYLISKGADTTIENDDGMVCYYGITQ 263          
BLAST of mRNA_Ecto-sp13_S_contig1519.3910.1 vs. uniprot
Match: H3GFG3_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GFG3_PHYRM)

HSP 1 Score: 114 bits (284), Expect = 1.250e-28
Identity = 50/88 (56.82%), Postives = 68/88 (77.27%), Query Frame = 1
Query:    1 RGVPADVRDSHGNTILIVACQNGHKRALKAALRHGADPDASNARGNTALHYCYAFGYEGTLGRYLMDKGADSSIRNRNGLVCYEGISR 264
            +GVP + RD+ GNT+L +ACQNG KR  K ALR GA+ +  N RGNTALH+C+A+GY  +LG YL+ KGAD++I N +G+VCY GI++
Sbjct:  141 QGVPVNSRDAFGNTLLSIACQNGLKRIAKLALRRGANINCQNNRGNTALHFCFAYGYGDSLGAYLISKGADTTIENDDGVVCYYGIAQ 228          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1519.3910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XZ48_HETAK1.160e-3563.22Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2MBB0_9STRA4.340e-3159.30Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
D8LT35_ECTSI1.070e-3098.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A5A8E191_CAFRO1.290e-3065.12Uncharacterized protein n=5 Tax=Cafeteria roenberg... [more]
A0A7S1C915_9STRA3.640e-3055.81Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A0W8D3U4_PHYNI1.900e-2956.82Histone-lysine N-methyltransferase n=1 Tax=Phytoph... [more]
A0A1V9Z1N7_9STRA2.180e-2956.98Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
G4Z035_PHYSP7.860e-2956.82Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
W2H644_PHYPR9.910e-2956.82Uncharacterized protein n=8 Tax=Phytophthora TaxID... [more]
H3GFG3_PHYRM1.250e-2856.82Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1519contigEcto-sp13_S_contig1519:1224..2687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score114.0
Seed ortholog evalue3.6e-23
Seed eggNOG ortholog4792.ETI50049
Model size430
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Ankyrin repeats (many copies)
EggNOG OGs3QESI@4776,COG4281@1,KOG0817@2759
Cds size267
COG Functional cat.I
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462808.0996797-CDS-Ecto-sp13_S_contig1519:1223..13891681462808.0996797-CDS-Ecto-sp13_S_contig1519:1223..1389Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1519 1224..1389 +
1681462808.1171713-CDS-Ecto-sp13_S_contig1519:1629..17031681462808.1171713-CDS-Ecto-sp13_S_contig1519:1629..1703Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1519 1630..1703 +
1681462808.128079-CDS-Ecto-sp13_S_contig1519:2497..25241681462808.128079-CDS-Ecto-sp13_S_contig1519:2497..2524Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1519 2498..2524 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462808.1377668-UTR-Ecto-sp13_S_contig1519:2524..26871681462808.1377668-UTR-Ecto-sp13_S_contig1519:2524..2687Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1519 2525..2687 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1519.3910.1prot_Ecto-sp13_S_contig1519.3910.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1519 1224..2524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1519.3910.1

>prot_Ecto-sp13_S_contig1519.3910.1 ID=prot_Ecto-sp13_S_contig1519.3910.1|Name=mRNA_Ecto-sp13_S_contig1519.3910.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
RGVPADVRDSHGNTILIVACQNGHKRALKAALRHGADPDASNARGNTALH
YCYAFGYEGTLGRYLMDKGADSSIRNRNGLVCYEGISR*
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mRNA from alignment at Ecto-sp13_S_contig1519:1224..2687+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1519.3910.1 ID=mRNA_Ecto-sp13_S_contig1519.3910.1|Name=mRNA_Ecto-sp13_S_contig1519.3910.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1464bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1519:1224..2687+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGGCGTCCCGGCTGATGTGCGGGACAGCCACGGCAACACCATTCTGAT TGTGGCATGTCAAAACGGCCACAAGCGGGCGCTGAAGGCAGCCTTGCGTC ATGGGGCTGATCCGGATGCTAGCAATGCCCGGGGAAATACGGCCCTCCAC TATTGCTACGCGTTTGGTGGGTGACGTGTTGTTGATTTGCAGGGAAAACA TCTCTTGCCTTAGCCATCGGCGGTGCGTGTCTGGGTCAAGAGTCCGACGA ACGTCAAGAAGCGAAGCTGCAAACTATGGTCGGCCACACTATTGTATGCC CGTCGTTCCATTGTGGCAAGAACTGTTCGGGTGAAGCATCTATTCGCTCC AAACACTTGCCAACCGGTACTCTCTTGTGTTCATTTCGTACTACGTGATT GTAAAGGTTACGAGGGCACCCTGGGGCGATACCTGATGGACAAAGGGGCA GATTCTTCGATCAGAAACCGGAACGGTTTGGTGGGTGCTCATGATGCAGA AGGGCATGCCAGTCGCGCTAGCCGCTTGTTTATTTGTCTTCGAAACCTTT CATGCGGGAGGGTCACACCGGATGTACGGGAACGAATCGAGGAGGAGGGG ATAAGGGGTTCGGTGGTGCAAGAACCAAGGAAAAAACAACTGTGTTCAAG AATGAATTCAACCTTGTCAAGTGCTGAGCGGTTCTCACCTACCCGAATCT CGAGAAGTAGATGGCTGTGCCAGCTCAGGTGGACGTTATCAGGCGAGGTA TTCATTTGTACTTCAAAGTGAGGCCAAAACGGCATCGTTGAAATTTCATA TTTTCATATTGCGCATTGTGGTAGAGCAGTTTACCAGGGGATAGCCTCCG TAACTTTCAGGCAAGCGAATTATCTTTGCTTCTTTCTTTCTCGAGGCACC ATCATTCTCTGTTGAATCTCCTTCCTGGCTGTGCTCCCAATGTTCCGCTT GCGTTCTACCTCCTCTTGTACCCTTCACCATGGCGCTGCCCGCATAAAAA ACAGTCACCCTGACGAAACATCGATTTGGCACCTCGCAAGGCTTGCCAAC CACGTGAACCCTCTCTGCTAGCTCATGTGCTGATTGTGCCGCGCTGGCTA GTGCATAAGGAGATTATTCGCGGTGTCCCCAGACAGGGCGTCATTTCAGA GCAATCTACCCGCCGATGTGTTAATCTCACAAACCTACGACATCATTCCA GCCTATGCTGGCCGTACAAGTTGTGGTTCATGCTCACGAAAGGTTTCGAA CAACCGTACACATCGGTGCAACAGGTGTGCTACGAAGGTATTAGCCGGTA GGAGCAGAGGGATGTTCTGCCATGCCCGGAATGTATTCGACAATGAAGTC GACCGGAAAATTTTGTTTGCCGAATTATGTGGACGCCACGGTTTAGCAGG CAAGTGAGCCGCGAATCTGTCTCTCATGGGCACGTGAGAGGTTACTGGCT GCGTGGGATGGAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1519:1224..2687+

>mRNA_Ecto-sp13_S_contig1519.3910.1 ID=mRNA_Ecto-sp13_S_contig1519.3910.1|Name=mRNA_Ecto-sp13_S_contig1519.3910.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1519:1224..2687+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGGCGTCCCGGCTGATGTGCGGGACAGCCACGGCAACACCATTCTGAT
TGTGGCATGTCAAAACGGCCACAAGCGGGCGCTGAAGGCAGCCTTGCGTC
ATGGGGCTGATCCGGATGCTAGCAATGCCCGGGGAAATACGGCCCTCCAC
TATTGCTACGCGTTTGGTTACGAGGGCACCCTGGGGCGATACCTGATGGA
CAAAGGGGCAGATTCTTCGATCAGAAACCGGAACGGTTTGGTGTGCTACG
AAGGTATTAGCCGGTAG
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