prot_Ecto-sp13_S_contig15184.3907.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig15184.3907.1
Unique Nameprot_Ecto-sp13_S_contig15184.3907.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length116
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15184.3907.1 vs. uniprot
Match: D7G9F3_ECTSI (Hypothetical UPF0043 protein slr0305 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9F3_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 1.570e-58
Identity = 95/107 (88.79%), Postives = 96/107 (89.72%), Query Frame = 0 
Query:    1 MEGLPERGRRAFWGPKAHPKTTPVVKEGPLPRQHREYAIAERAAMDEEVRQAVEKDNERVXXXXXXIMMFVVVALVVSAIVDIACHDNVRTWLETSFDWIEDNPKAG 107
            MEGLPERGRRAFWG K HP+TTPVV EGPLPRQHREYA AERAAMDEEV QAVEKDNERV      IMMFVVVALVVSAIVDIACHDNVRTWLETSFDWIEDNPKAG
Sbjct:    1 MEGLPERGRRAFWGGKTHPRTTPVVTEGPLPRQHREYATAERAAMDEEVGQAVEKDNERVNQRIKRIMMFVVVALVVSAIVDIACHDNVRTWLETSFDWIEDNPKAG 107
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BLAST of mRNA_Ecto-sp13_S_contig15184.3907.1 vs. uniprot
Match: A0A6H5JID7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JID7_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 1.800e-51
Identity = 93/107 (86.92%), Postives = 94/107 (87.85%), Query Frame = 0 
Query:    1 MEGLPERGRRAFWGPKAHPKTTPVVKEGPLPRQHREYAIAERAAMDEEVRQAVEKDNERVXXXXXXIMMFVVVALVVSAIVDIACHDNVRTWLETSFDWIEDNPKAG 107
            MEGLPERGRRAFWGPKAHPKTTPVVKEGPLPRQHREYA AERAAMDEEV QAVEKDNERVXXXXXX           SAIVDIACHDNVRTWLETSF+WIEDNPKAG
Sbjct:    1 MEGLPERGRRAFWGPKAHPKTTPVVKEGPLPRQHREYATAERAAMDEEVGQAVEKDNERVXXXXXXXXXXXXXXXXXSAIVDIACHDNVRTWLETSFEWIEDNPKAG 107
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15184.3907.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G9F3_ECTSI1.570e-5888.79Hypothetical UPF0043 protein slr0305 n=1 Tax=Ectoc... [more]
A0A6H5JID7_9PHAE1.800e-5186.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..66
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 67..84
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 85..115
NoneNo IPR availableTMHMMTMhelixcoord: 67..84

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15184contigEcto-sp13_S_contig15184:96..443 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15184.3907.1mRNA_Ecto-sp13_S_contig15184.3907.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig15184 96..443 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig15184.3907.1 ID=prot_Ecto-sp13_S_contig15184.3907.1|Name=mRNA_Ecto-sp13_S_contig15184.3907.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=116bp
MEGLPERGRRAFWGPKAHPKTTPVVKEGPLPRQHREYAIAERAAMDEEVR
QAVEKDNERVNQRIKRIMMFVVVALVVSAIVDIACHDNVRTWLETSFDWI
EDNPKAGECALCIHV*
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