mRNA_Ecto-sp13_S_contig15184.3907.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15184.3907.1
Unique NamemRNA_Ecto-sp13_S_contig15184.3907.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15184.3907.1 vs. uniprot
Match: D7G9F3_ECTSI (Hypothetical UPF0043 protein slr0305 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9F3_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 1.570e-58
Identity = 95/107 (88.79%), Postives = 96/107 (89.72%), Query Frame = 1 
Query:    1 MEGLPERGRRAFWGPKAHPKTTPVVKEGPLPRQHREYAIAERAAMDEEVRQAVEKDNERVXXXXXXIMMFVVVALVVSAIVDIACHDNVRTWLETSFDWIEDNPKAG 321
            MEGLPERGRRAFWG K HP+TTPVV EGPLPRQHREYA AERAAMDEEV QAVEKDNERV      IMMFVVVALVVSAIVDIACHDNVRTWLETSFDWIEDNPKAG
Sbjct:    1 MEGLPERGRRAFWGGKTHPRTTPVVTEGPLPRQHREYATAERAAMDEEVGQAVEKDNERVNQRIKRIMMFVVVALVVSAIVDIACHDNVRTWLETSFDWIEDNPKAG 107
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BLAST of mRNA_Ecto-sp13_S_contig15184.3907.1 vs. uniprot
Match: A0A6H5JID7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JID7_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 1.800e-51
Identity = 93/107 (86.92%), Postives = 94/107 (87.85%), Query Frame = 1 
Query:    1 MEGLPERGRRAFWGPKAHPKTTPVVKEGPLPRQHREYAIAERAAMDEEVRQAVEKDNERVXXXXXXIMMFVVVALVVSAIVDIACHDNVRTWLETSFDWIEDNPKAG 321
            MEGLPERGRRAFWGPKAHPKTTPVVKEGPLPRQHREYA AERAAMDEEV QAVEKDNERVXXXXXX           SAIVDIACHDNVRTWLETSF+WIEDNPKAG
Sbjct:    1 MEGLPERGRRAFWGPKAHPKTTPVVKEGPLPRQHREYATAERAAMDEEVGQAVEKDNERVXXXXXXXXXXXXXXXXXSAIVDIACHDNVRTWLETSFEWIEDNPKAG 107
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15184.3907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G9F3_ECTSI1.570e-5888.79Hypothetical UPF0043 protein slr0305 n=1 Tax=Ectoc... [more]
A0A6H5JID7_9PHAE1.800e-5186.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15184contigEcto-sp13_S_contig15184:96..443 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score192.2
Seed ortholog evalue1.4e-46
Seed eggNOG ortholog2880.D7G9F3
Model size348
KEGG rclassRC00046
KEGG koko:K00486
KEGG ReactionR01960
KEGG Pathwayko00380,ko01100,map00380,map01100
KEGG ModuleM00038
Hectar predicted targeting categorysignal anchor
Exons1
EggNOG free text desc.canonical Wnt signaling pathway involved in osteoblast differentiation
EggNOG OGsCOG0398@1,KOG3140@2759
Ec32 ortholog descriptionPutative SNARE-associated Golgi protein
Ec32 orthologEc-28_000720.1
EC1.14.13.9
Cds size348
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462807.8578415-CDS-Ecto-sp13_S_contig15184:95..4431681462807.8578415-CDS-Ecto-sp13_S_contig15184:95..443Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15184 96..443 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15184.3907.1prot_Ecto-sp13_S_contig15184.3907.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15184 96..443 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15184.3907.1

>prot_Ecto-sp13_S_contig15184.3907.1 ID=prot_Ecto-sp13_S_contig15184.3907.1|Name=mRNA_Ecto-sp13_S_contig15184.3907.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=116bp
MEGLPERGRRAFWGPKAHPKTTPVVKEGPLPRQHREYAIAERAAMDEEVR
QAVEKDNERVNQRIKRIMMFVVVALVVSAIVDIACHDNVRTWLETSFDWI
EDNPKAGECALCIHV*
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mRNA from alignment at Ecto-sp13_S_contig15184:96..443-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15184.3907.1 ID=mRNA_Ecto-sp13_S_contig15184.3907.1|Name=mRNA_Ecto-sp13_S_contig15184.3907.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15184:96..443- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAGGGCTTCCAGAGCGAGGCCGCCGTGCGTTCTGGGGGCCGAAAGC
GCACCCAAAAACCACACCCGTCGTGAAGGAAGGGCCGCTACCGCGCCAAC
ACCGCGAGTATGCTATCGCTGAGAGGGCGGCGATGGACGAGGAAGTCCGC
CAAGCGGTTGAGAAGGACAACGAGCGAGTTAACCAACGCATCAAGAGGAT
AATGATGTTCGTGGTGGTTGCCCTTGTAGTCAGCGCGATTGTAGACATTG
CCTGCCACGACAACGTCAGAACGTGGCTTGAAACGTCGTTCGACTGGATA
GAGGACAACCCGAAGGCCGGTGAGTGCGCTCTTTGTATTCATGTATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15184:96..443-

>mRNA_Ecto-sp13_S_contig15184.3907.1 ID=mRNA_Ecto-sp13_S_contig15184.3907.1|Name=mRNA_Ecto-sp13_S_contig15184.3907.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15184:96..443- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAGGGCTTCCAGAGCGAGGCCGCCGTGCGTTCTGGGGGCCGAAAGC
GCACCCAAAAACCACACCCGTCGTGAAGGAAGGGCCGCTACCGCGCCAAC
ACCGCGAGTATGCTATCGCTGAGAGGGCGGCGATGGACGAGGAAGTCCGC
CAAGCGGTTGAGAAGGACAACGAGCGAGTTAACCAACGCATCAAGAGGAT
AATGATGTTCGTGGTGGTTGCCCTTGTAGTCAGCGCGATTGTAGACATTG
CCTGCCACGACAACGTCAGAACGTGGCTTGAAACGTCGTTCGACTGGATA
GAGGACAACCCGAAGGCCGGTGAGTGCGCTCTTTGTATTCATGTATAG
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