prot_Ecto-sp13_S_contig15166.3896.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig15166.3896.1
Unique Nameprot_Ecto-sp13_S_contig15166.3896.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length336
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15166.3896.1 vs. uniprot
Match: A0A6H5JVI5_9PHAE (BHLH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVI5_9PHAE)

HSP 1 Score: 440 bits (1132), Expect = 4.410e-149
Identity = 276/339 (81.42%), Postives = 286/339 (84.37%), Query Frame = 0 
Query:    1 QVNEKFDQLLQVLEEAEATSGLEPPAAKEGKTAAHACINGRRVEVLSRTIQVVKKLLRERREALAGVPPPGDDTLAAVATGISNGWQEEETAEGPVLDGGFRSEVEENNKTTPLTMETSAXXXXAP--TRDVIDSNEAAVGGSDAHAEAAVASTMVAAAPEGAATNHQSLMHHVAMSVSGHHPSVMMAPGFTGVPGHPVPSPPHGIPGHPGGPIFFAVPMYIPQGQGIPPPAAATAATTAAEIAVQAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVV--DGTEAVPAPSGKKTWAVPAGMGYQSMMTLQMPQFVTQALSGEEGSEEPTHAVCA 335
            +VNEKFDQLLQVLEEAEATSGLEPPAAK+GKTAAHACINGRRVEVLSRTIQVVKKLLRERREALAGVPPP DDTLAAVA GISNGWQEE TAEGPVLDGGFRSEVEEN            XXXX    TRDVIDSNEAA  G+DA AEAA+A+TMV    EG    H S+MHHVAMSVSGHHPS+MMAPGFTGVPGHPVPSPPHGIPGHPGGPIFFAVPMYIPQGQG+PP AA+TA T AAE A Q PA          XXXXXXXXXXXXXXXXXXXXX     D TEAVPAPSGKKTWAVPAGMGYQSMMTLQMPQFVTQALSGEEGSE+PTHAVCA
Sbjct:  233 EVNEKFDQLLQVLEEAEATSGLEPPAAKDGKTAAHACINGRRVEVLSRTIQVVKKLLRERREALAGVPPPADDTLAAVAAGISNGWQEE-TAEGPVLDGGFRSEVEENXXXXXXXXXXXXXXXXXXXXTRDVIDSNEAAAEGADAQAEAAIAATMVXX-XEGXXAKHHSVMHHVAMSVSGHHPSMMMAPGFTGVPGHPVPSPPHGIPGHPGGPIFFAVPMYIPQGQGMPPVAASTATTAAAEHAAQVPAATAVAAPSLAXXXXXXXXXXXXXXXXXXXXXXXXXXDATEAVPAPSGKKTWAVPAGMGYQSMMTLQMPQFVTQALSGEEGSEKPTHAVCA 569
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15166.3896.1 vs. uniprot
Match: D7FS24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS24_ECTSI)

HSP 1 Score: 197 bits (501), Expect = 2.670e-59
Identity = 141/171 (82.46%), Postives = 145/171 (84.80%), Query Frame = 0 
Query:  169 MHHVAMSVSGHHPSVMMAPGFTGVPGHPVPSPPHGIPGHPGGPIFFAVPMYIPQGQGIPPPAAATAATTAAEIAVQAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----GVVDGTEAVPAPSGKKTWAVPAGMGYQSMMTLQMPQFVTQALSGEEGSEEPTHAVCA 335
            MHHVAMSVSGHHPS+MMAPGFTGVPGH VPSP HGIPGHPGGPIFFAVPMYIPQGQG+P  A                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    GVVD TEAVPAPSGKKTWAVPAGMGYQSMMTLQMPQFVTQALSGEEG+E+PTHAVCA
Sbjct:    1 MHHVAMSVSGHHPSMMMAPGFTGVPGHSVPSPQHGIPGHPGGPIFFAVPMYIPQGQGMPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPGVVDATEAVPAPSGKKTWAVPAGMGYQSMMTLQMPQFVTQALSGEEGNEKPTHAVCA 171
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15166.3896.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JVI5_9PHAE4.410e-14981.42BHLH domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FS24_ECTSI2.670e-5982.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15166contigEcto-sp13_S_contig15166:2876..3883 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15166.3896.1mRNA_Ecto-sp13_S_contig15166.3896.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig15166 2876..3883 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig15166.3896.1 ID=prot_Ecto-sp13_S_contig15166.3896.1|Name=mRNA_Ecto-sp13_S_contig15166.3896.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=336bp
QVNEKFDQLLQVLEEAEATSGLEPPAAKEGKTAAHACINGRRVEVLSRTI
QVVKKLLRERREALAGVPPPGDDTLAAVATGISNGWQEEETAEGPVLDGG
FRSEVEENNKTTPLTMETSAAAAAAPTRDVIDSNEAAVGGSDAHAEAAVA
STMVAAAPEGAATNHQSLMHHVAMSVSGHHPSVMMAPGFTGVPGHPVPSP
PHGIPGHPGGPIFFAVPMYIPQGQGIPPPAAATAATTAAEIAVQAPAATS
VAAPSLAATPAAAADLAPTPVAEAAVAPGVVDGTEAVPAPSGKKTWAVPA
GMGYQSMMTLQMPQFVTQALSGEEGSEEPTHAVCA*
back to top