mRNA_Ecto-sp13_S_contig15166.3896.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15166.3896.1
Unique NamemRNA_Ecto-sp13_S_contig15166.3896.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15166.3896.1 vs. uniprot
Match: A0A6H5JVI5_9PHAE (BHLH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVI5_9PHAE)

HSP 1 Score: 440 bits (1132), Expect = 4.410e-149
Identity = 276/339 (81.42%), Postives = 286/339 (84.37%), Query Frame = 1 
Query:    1 QVNEKFDQLLQVLEEAEATSGLEPPAAKEGKTAAHACINGRRVEVLSRTIQVVKKLLRERREALAGVPPPGDDTLAAVATGISNGWQEEETAEGPVLDGGFRSEVEENNKTTPLTMETSAXXXXAP--TRDVIDSNEAAVGGSDAHAEAAVASTMVAAAPEGAATNHQSLMHHVAMSVSGHHPSVMMAPGFTGVPGHPVPSPPHGIPGHPGGPIFFAVPMYIPQGQGIPPPAAATAATTAAEIAVQAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVV--DGTEAVPAPSGKKTWAVPAGMGYQSMMTLQMPQFVTQALSGEEGSEEPTHAVCA 1005
            +VNEKFDQLLQVLEEAEATSGLEPPAAK+GKTAAHACINGRRVEVLSRTIQVVKKLLRERREALAGVPPP DDTLAAVA GISNGWQEE TAEGPVLDGGFRSEVEEN            XXXX    TRDVIDSNEAA  G+DA AEAA+A+TMV    EG    H S+MHHVAMSVSGHHPS+MMAPGFTGVPGHPVPSPPHGIPGHPGGPIFFAVPMYIPQGQG+PP AA+TA T AAE A Q PA          XXXXXXXXXXXXXXXXXXXXX     D TEAVPAPSGKKTWAVPAGMGYQSMMTLQMPQFVTQALSGEEGSE+PTHAVCA
Sbjct:  233 EVNEKFDQLLQVLEEAEATSGLEPPAAKDGKTAAHACINGRRVEVLSRTIQVVKKLLRERREALAGVPPPADDTLAAVAAGISNGWQEE-TAEGPVLDGGFRSEVEENXXXXXXXXXXXXXXXXXXXXTRDVIDSNEAAAEGADAQAEAAIAATMVXX-XEGXXAKHHSVMHHVAMSVSGHHPSMMMAPGFTGVPGHPVPSPPHGIPGHPGGPIFFAVPMYIPQGQGMPPVAASTATTAAAEHAAQVPAATAVAAPSLAXXXXXXXXXXXXXXXXXXXXXXXXXXDATEAVPAPSGKKTWAVPAGMGYQSMMTLQMPQFVTQALSGEEGSEKPTHAVCA 569
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BLAST of mRNA_Ecto-sp13_S_contig15166.3896.1 vs. uniprot
Match: D7FS24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS24_ECTSI)

HSP 1 Score: 197 bits (501), Expect = 2.670e-59
Identity = 141/171 (82.46%), Postives = 145/171 (84.80%), Query Frame = 1 
Query:  505 MHHVAMSVSGHHPSVMMAPGFTGVPGHPVPSPPHGIPGHPGGPIFFAVPMYIPQGQGIPPPAAATAATTAAEIAVQAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----GVVDGTEAVPAPSGKKTWAVPAGMGYQSMMTLQMPQFVTQALSGEEGSEEPTHAVCA 1005
            MHHVAMSVSGHHPS+MMAPGFTGVPGH VPSP HGIPGHPGGPIFFAVPMYIPQGQG+P  A                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    GVVD TEAVPAPSGKKTWAVPAGMGYQSMMTLQMPQFVTQALSGEEG+E+PTHAVCA
Sbjct:    1 MHHVAMSVSGHHPSMMMAPGFTGVPGHSVPSPQHGIPGHPGGPIFFAVPMYIPQGQGMPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPGVVDATEAVPAPSGKKTWAVPAGMGYQSMMTLQMPQFVTQALSGEEGNEKPTHAVCA 171
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15166.3896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JVI5_9PHAE4.410e-14981.42BHLH domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FS24_ECTSI2.670e-5982.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15166contigEcto-sp13_S_contig15166:2876..3883 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1008
Hectar predicted targeting categoryother localisation
Exons1
Cds size1008
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462806.9833837-CDS-Ecto-sp13_S_contig15166:2875..38831681462806.9833837-CDS-Ecto-sp13_S_contig15166:2875..3883Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15166 2876..3883 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15166.3896.1prot_Ecto-sp13_S_contig15166.3896.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15166 2876..3883 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15166.3896.1

>prot_Ecto-sp13_S_contig15166.3896.1 ID=prot_Ecto-sp13_S_contig15166.3896.1|Name=mRNA_Ecto-sp13_S_contig15166.3896.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=336bp
QVNEKFDQLLQVLEEAEATSGLEPPAAKEGKTAAHACINGRRVEVLSRTI
QVVKKLLRERREALAGVPPPGDDTLAAVATGISNGWQEEETAEGPVLDGG
FRSEVEENNKTTPLTMETSAAAAAAPTRDVIDSNEAAVGGSDAHAEAAVA
STMVAAAPEGAATNHQSLMHHVAMSVSGHHPSVMMAPGFTGVPGHPVPSP
PHGIPGHPGGPIFFAVPMYIPQGQGIPPPAAATAATTAAEIAVQAPAATS
VAAPSLAATPAAAADLAPTPVAEAAVAPGVVDGTEAVPAPSGKKTWAVPA
GMGYQSMMTLQMPQFVTQALSGEEGSEEPTHAVCA*
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mRNA from alignment at Ecto-sp13_S_contig15166:2876..3883-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15166.3896.1 ID=mRNA_Ecto-sp13_S_contig15166.3896.1|Name=mRNA_Ecto-sp13_S_contig15166.3896.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1008bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15166:2876..3883- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTCAACGAAAAGTTCGATCAGCTGCTTCAGGTCTTGGAAGAGGCCGA
GGCAACCTCTGGCCTCGAGCCCCCCGCCGCGAAGGAGGGCAAGACCGCGG
CGCACGCATGCATCAACGGGCGGCGGGTGGAGGTGCTCTCCCGCACTATC
CAGGTGGTCAAGAAGCTTCTCCGGGAGAGACGCGAGGCGCTCGCCGGCGT
GCCGCCGCCGGGCGACGATACCTTGGCCGCTGTCGCCACCGGAATTTCTA
ACGGCTGGCAGGAGGAGGAGACGGCGGAAGGGCCGGTCCTCGACGGAGGC
TTCCGTAGCGAGGTCGAGGAGAACAACAAGACTACACCCTTGACAATGGA
GACCTCTGCTGCTGCTGCTGCTGCTCCTACCCGCGACGTTATCGATTCCA
ACGAAGCTGCCGTCGGAGGATCTGACGCTCACGCAGAAGCGGCGGTTGCC
TCAACGATGGTGGCTGCTGCGCCGGAGGGAGCCGCCACCAACCACCAGTC
CCTCATGCACCACGTCGCCATGTCCGTGTCAGGGCACCACCCGTCGGTGA
TGATGGCGCCTGGTTTTACGGGTGTGCCCGGCCACCCAGTGCCCTCACCC
CCGCACGGCATCCCCGGCCACCCGGGAGGGCCGATTTTCTTTGCGGTGCC
GATGTATATCCCTCAGGGACAAGGCATACCGCCGCCGGCGGCGGCAACCG
CGGCAACCACGGCAGCAGAGATTGCCGTTCAGGCGCCCGCGGCGACTTCA
GTGGCGGCGCCGTCGTTGGCGGCTACTCCGGCCGCCGCTGCTGATCTCGC
GCCGACGCCGGTGGCAGAGGCGGCGGTAGCGCCGGGGGTTGTTGACGGGA
CGGAGGCCGTACCCGCCCCCTCGGGCAAGAAGACATGGGCGGTGCCCGCC
GGCATGGGCTACCAGTCGATGATGACCTTGCAGATGCCTCAGTTCGTGAC
CCAGGCCTTGTCTGGCGAGGAGGGGAGCGAGGAGCCTACGCACGCGGTGT
GCGCGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15166:2876..3883-

>mRNA_Ecto-sp13_S_contig15166.3896.1 ID=mRNA_Ecto-sp13_S_contig15166.3896.1|Name=mRNA_Ecto-sp13_S_contig15166.3896.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1008bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15166:2876..3883- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTCAACGAAAAGTTCGATCAGCTGCTTCAGGTCTTGGAAGAGGCCGA
GGCAACCTCTGGCCTCGAGCCCCCCGCCGCGAAGGAGGGCAAGACCGCGG
CGCACGCATGCATCAACGGGCGGCGGGTGGAGGTGCTCTCCCGCACTATC
CAGGTGGTCAAGAAGCTTCTCCGGGAGAGACGCGAGGCGCTCGCCGGCGT
GCCGCCGCCGGGCGACGATACCTTGGCCGCTGTCGCCACCGGAATTTCTA
ACGGCTGGCAGGAGGAGGAGACGGCGGAAGGGCCGGTCCTCGACGGAGGC
TTCCGTAGCGAGGTCGAGGAGAACAACAAGACTACACCCTTGACAATGGA
GACCTCTGCTGCTGCTGCTGCTGCTCCTACCCGCGACGTTATCGATTCCA
ACGAAGCTGCCGTCGGAGGATCTGACGCTCACGCAGAAGCGGCGGTTGCC
TCAACGATGGTGGCTGCTGCGCCGGAGGGAGCCGCCACCAACCACCAGTC
CCTCATGCACCACGTCGCCATGTCCGTGTCAGGGCACCACCCGTCGGTGA
TGATGGCGCCTGGTTTTACGGGTGTGCCCGGCCACCCAGTGCCCTCACCC
CCGCACGGCATCCCCGGCCACCCGGGAGGGCCGATTTTCTTTGCGGTGCC
GATGTATATCCCTCAGGGACAAGGCATACCGCCGCCGGCGGCGGCAACCG
CGGCAACCACGGCAGCAGAGATTGCCGTTCAGGCGCCCGCGGCGACTTCA
GTGGCGGCGCCGTCGTTGGCGGCTACTCCGGCCGCCGCTGCTGATCTCGC
GCCGACGCCGGTGGCAGAGGCGGCGGTAGCGCCGGGGGTTGTTGACGGGA
CGGAGGCCGTACCCGCCCCCTCGGGCAAGAAGACATGGGCGGTGCCCGCC
GGCATGGGCTACCAGTCGATGATGACCTTGCAGATGCCTCAGTTCGTGAC
CCAGGCCTTGTCTGGCGAGGAGGGGAGCGAGGAGCCTACGCACGCGGTGT
GCGCGTAA
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