mRNA_Ecto-sp13_S_contig15159.3887.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15159.3887.1
Unique NamemRNA_Ecto-sp13_S_contig15159.3887.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15159.3887.1 vs. uniprot
Match: D7FP69_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP69_ECTSI)

HSP 1 Score: 261 bits (667), Expect = 7.800e-79
Identity = 160/165 (96.97%), Postives = 160/165 (96.97%), Query Frame = 1
Query:   16 RVTFRRVCDAMQVRWHPRVSEVESTLARKVYERVARDRERELRTDRWRGFKIGAAMIGGGTLLAVTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXFATTAWMATLFGAGGAGLVGYKMDRRTKGVKEFEFESETSVGEEMCVSICVPGVLKDKADLQRGWGVEPR 510
            RVTFRRVCDAMQVRWHPRVSEVESTLARKVYERVARDRERELRTDRWRGFKIGAAMIGGGTLLAVTG   XXXXXXXXXXXXXXXXXXXXXXX  FATTAWMATLFGAGGAGLVGYKMDRRTKGVKEFEFESETSVGEEMCVSICVPGVLKDKADLQRGWGVEPR
Sbjct:  122 RVTFRRVCDAMQVRWHPRVSEVESTLARKVYERVARDRERELRTDRWRGFKIGAAMIGGGTLLAVTGGLAXXXXXXXXXXXXXXXXXXXXXXXSGFATTAWMATLFGAGGAGLVGYKMDRRTKGVKEFEFESETSVGEEMCVSICVPGVLKDKADLQRGWGVEPR 286          
BLAST of mRNA_Ecto-sp13_S_contig15159.3887.1 vs. uniprot
Match: W7TZH7_9STRA (Uncharacterized protein n=5 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TZH7_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 9.090e-15
Identity = 63/179 (35.20%), Postives = 91/179 (50.84%), Query Frame = 1
Query:    1 DAKPRRVTFRRVCDAMQVRWHPRVSEVESTLARKVYERVARDRERELRTDRWRGFKIGAAMIGGGTLLAVTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXFATTAWMATLFGAGGAGLVGYKMDRRTKGVKEFEF--------ESETSVGEEMCVSICVPG-VLKDKADLQRGWGVEPR 510
            DA+ RR+  R   DA ++ W   ++ VE+  A  +YE     +E+E      R  KI AA +GGG LLA+TG                              +TA +ATLFGA GAGLVGYKM RRT  + +FEF        + E+ +G  M + IC+ G +++D+++    +GVEPR
Sbjct:  156 DARTRRIMMRLASDAFEISWR-NIACVEAFTASYLYEIWEARQEKEKINKGLRYAKITAAAVGGGALLALTGGLAAPAIGIGLSAMSATGAVVAG-----LTSTASVATLFGASGAGLVGYKMRRRTAALDQFEFRHVEPSGDKKESDLGR-MAICICISGWLVEDESEYDTPFGVEPR 327          
BLAST of mRNA_Ecto-sp13_S_contig15159.3887.1 vs. uniprot
Match: B5YMF2_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YMF2_THAPS)

HSP 1 Score: 74.7 bits (182), Expect = 1.790e-12
Identity = 48/120 (40.00%), Postives = 62/120 (51.67%), Query Frame = 1
Query:  157 RGFKIGAAMIGGGTLLAVTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXFATTAWMATLFGAGGAGLVGYKMDRRTKGVKEFEFESE--TSVGE-EMCVSICVPGVLKDKADLQRGWGVEP 507
            RG KIG A   G TL A+TG                             +  A ++T+FG GGAGL GYKM RRTKG+ EF+F+ E  +  GE E+  ++C+ G L+D  D QR WGV P
Sbjct:  973 RGLKIGTAGAVGATLFALTGGLAAPGIAAGLAAVAGGSAVAAGVSTVLTSAAA-ISTIFGVGGAGLAGYKMHRRTKGLTEFDFQKEGMSKNGEAELFSTVCISGWLRDARDFQRPWGVFP 1091          
BLAST of mRNA_Ecto-sp13_S_contig15159.3887.1 vs. uniprot
Match: A0A7S2PUT1_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PUT1_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.290e-12
Identity = 46/121 (38.02%), Postives = 61/121 (50.41%), Query Frame = 1
Query:  157 RGFKIGAAMIGGGTLLAVTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXFATTAWMATLFGAGGAGLVGYKMDRRTKGVKEFEFESETSVGE----EMCVSICVPGVLKDKADLQRGWGVEP 507
            RG K+G A   G TL A+TG                             +  A + T+FG GGAGL GYKM RRTKG+ EF+F+ E  +G+    E+  ++C+ G L+D  D QR WGV P
Sbjct:  626 RGIKVGTAGAVGATLFALTGGLAAPGIAAGLAAVAGGSALAAGVTTVLSSAAA-ITTIFGVGGAGLAGYKMHRRTKGLTEFDFQKE-QLGKNSEAELFSTVCISGWLRDARDFQRPWGVSP 744          
BLAST of mRNA_Ecto-sp13_S_contig15159.3887.1 vs. uniprot
Match: A0A1V9YBI8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YBI8_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 4.050e-12
Identity = 52/115 (45.22%), Postives = 60/115 (52.17%), Query Frame = 1
Query:  157 RGFKIGAAMIGGGTLLAVTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXFATTAWMATLFGAGGAGLVGYKMDRRTKGVKEFEFESETSVGEEMCVSICVPGVLK-DKADLQRGWG 498
            R  KIG A + GGTLLA+TG                       XX      TA  + LFG  GAGLVG+K DRRT G+K+FEFE   S G  M V ICV G L  D+AD +R WG
Sbjct:  207 RNLKIGTAAVAGGTLLALTGGLVAPALAAGFTALGGVGAVVGTXXGSAGGITA-ASVLFGTAGAGLVGFKTDRRTSGIKQFEFEL-LSAGSGMHVYICVSGWLDHDEADFKRPWG 319          
BLAST of mRNA_Ecto-sp13_S_contig15159.3887.1 vs. uniprot
Match: T0QKH0_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QKH0_SAPDV)

HSP 1 Score: 71.6 bits (174), Expect = 1.900e-11
Identity = 51/116 (43.97%), Postives = 61/116 (52.59%), Query Frame = 1
Query:  157 RGFKIGAAMIGGGTLLAVTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXFATTAWMATLFGAGGAGLVGYKMDRRTKGVKEFEFESETSVGEEMCVSICVPGVLKD--KADLQRGWG 498
            R  KIG A + GGTLLA+TG                      XXX      TA    LFG  GAGL GYK DRRT G+K+FEFE  T+ G  M V IC+ G L++  +AD +R WG
Sbjct:  224 RNLKIGTAAVAGGTLLALTGGLVAPALAAGFTALGGVGAVVGXXXASAGGVTA-ATVLFGTAGAGLAGYKTDRRTSGIKQFEFELLTA-GSGMNVYICISGWLENNSEADFKRPWG 337          
BLAST of mRNA_Ecto-sp13_S_contig15159.3887.1 vs. uniprot
Match: A0A7S1YH88_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YH88_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.320e-10
Identity = 34/74 (45.95%), Postives = 43/74 (58.11%), Query Frame = 1
Query:  325 TLFGAGGAGLVGYKMDRRTKGVKEFEFESETS-------------VGEEMCVSICVPGVLKDKADLQRGWGVEP 507
            T+FG GGAGL  YKM RRTKG+ EFEF+ E+              +  E+  +ICV G L+D +D QR WG  P
Sbjct:    1 TIFGVGGAGLAAYKMQRRTKGLTEFEFQKESGLVRNQEGHSENAPIEAELFTTICVSGWLRDYSDFQRPWGTTP 74          
BLAST of mRNA_Ecto-sp13_S_contig15159.3887.1 vs. uniprot
Match: A0A1W0AA63_9STRA (B2-adapt-app_C domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AA63_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 3.400e-10
Identity = 53/116 (45.69%), Postives = 61/116 (52.59%), Query Frame = 1
Query:  157 RGFKIGAAMIGGGTLLAVTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXFATTAWMATLFGAGGAGLVGYKMDRRTKGVKEFEFESETSVGEEMCVSICVPGVLKDKA--DLQRGWG 498
            R  KIG A + GGTLLA+TG                     XXXXXXX         LFG  GAGL GYK DRRT G+K+FEFE  T+ G  M V IC+ G L+D    D +R WG
Sbjct:  218 RNLKIGTAAVAGGTLLALTGGLVAPALAAGFTALGGVGAVVXXXXXXXXXXXX-XTVLFGTAGAGLAGYKTDRRTSGIKQFEFELLTA-GSGMSVYICISGWLEDNVQDDFKRPWG 331          
BLAST of mRNA_Ecto-sp13_S_contig15159.3887.1 vs. uniprot
Match: A0A6G0WSY3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WSY3_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 6.490e-9
Identity = 44/116 (37.93%), Postives = 53/116 (45.69%), Query Frame = 1
Query:  157 RGFKIGAAMIGGGTLLAVTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXFATTAWMATLFGAGGAGLVGYKMDRRTKGVKEFEFESETSVGEEMCVSICVPGVL--KDKADLQRGWG 498
            R   IG A + GGTLLA+TG                             A       LFG  GAGL GYK DRRT G+K FEFE  T  G+ M V ICV G +  K+K +  + +G
Sbjct:  223 RNLAIGGAAVAGGTLLALTGGLIATPLLAAGFLGLGTTGAAIGTALGSSAAVTAATVLFGTAGAGLAGYKADRRTLGIKHFEFELLTP-GDGMHVYICVAGWIESKEKTEYSKAFG 337          
BLAST of mRNA_Ecto-sp13_S_contig15159.3887.1 vs. uniprot
Match: A0A7S4T9W3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T9W3_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.110e-8
Identity = 54/138 (39.13%), Postives = 71/138 (51.45%), Query Frame = 1
Query:  121 RDRERELRTDRWRGFKIGAAMIGGGTLLAVTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXFATTAWMATLFGAGGAGLVGYKMDRRTKGVKEFEFESETS-------VGEE-----MCVSICVPGVLKDKADLQRGWG 498
            R RE+  R    RG KIG A +  GTLLAVTG           XXXXXX            A+TA ++T+FG GG  LV  KMD+RT+G+ EF+   E +        GEE     +  ++C+ G L+D  D +R WG
Sbjct:  373 RKREKTNRQKVIRGLKIGTAGVVAGTLLAVTGGLAAPAVAAGIXXXXXXTVIATVATIA-LASTAAVSTVFGVGGGALVAAKMDKRTRGLTEFQIRLEEARDTRDKTKGEEEKKAELYRTLCISGWLRDDNDFRRPWG 509          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15159.3887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7FP69_ECTSI7.800e-7996.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TZH7_9STRA9.090e-1535.20Uncharacterized protein n=5 Tax=Nannochloropsis ga... [more]
B5YMF2_THAPS1.790e-1240.00Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
A0A7S2PUT1_9STRA3.290e-1238.02Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A1V9YBI8_9STRA4.050e-1245.22Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
T0QKH0_SAPDV1.900e-1143.97Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A7S1YH88_9STRA2.320e-1045.95Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A1W0AA63_9STRA3.400e-1045.69B2-adapt-app_C domain-containing protein n=1 Tax=T... [more]
A0A6G0WSY3_9STRA6.490e-937.93Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S4T9W3_9STRA3.110e-839.13Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15159contigEcto-sp13_S_contig15159:3..1343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score262.3
Seed ortholog evalue1.6e-67
Seed eggNOG ortholog2880.D7FP69
Preferred nameTMCO4
Model size510
KEGG koko:K14773
Hectar predicted targeting categorysignal anchor
GOsGO:0003674,GO:0003824,GO:0005575,GO:0006810,GO:0008150,GO:0016020,GO:0016021,GO:0016192,GO:0016298,GO:0016787,GO:0016788,GO:0031224,GO:0044425,GO:0051179,GO:0051234
Exons2
EggNOG free text desc.Protein of unknown function (DUF726)
EggNOG OGsKOG2385@1,KOG2385@2759
Cds size510
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462806.3618257-CDS-Ecto-sp13_S_contig15159:2..1191681462806.3618257-CDS-Ecto-sp13_S_contig15159:2..119Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15159 3..119 -
1681462806.3721876-CDS-Ecto-sp13_S_contig15159:950..13431681462806.3721876-CDS-Ecto-sp13_S_contig15159:950..1343Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15159 951..1343 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15159.3887.1prot_Ecto-sp13_S_contig15159.3887.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15159 3..1343 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15159.3887.1

>prot_Ecto-sp13_S_contig15159.3887.1 ID=prot_Ecto-sp13_S_contig15159.3887.1|Name=mRNA_Ecto-sp13_S_contig15159.3887.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=170bp
DAKPRRVTFRRVCDAMQVRWHPRVSEVESTLARKVYERVARDRERELRTD
RWRGFKIGAAMIGGGTLLAVTGGLAAPALAAGIAASSSVIGVTAAATLSG
FATTAWMATLFGAGGAGLVGYKMDRRTKGVKEFEFESETSVGEEMCVSIC
VPGVLKDKADLQRGWGVEPR
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mRNA from alignment at Ecto-sp13_S_contig15159:3..1343-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15159.3887.1 ID=mRNA_Ecto-sp13_S_contig15159.3887.1|Name=mRNA_Ecto-sp13_S_contig15159.3887.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1341bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15159:3..1343- (Ectocarpus species13 EcNAP12_S_4_19m)
GATGCAAAACCCCGCAGGGTAACCTTCCGAAGGGTCTGCGACGCGATGCA AGTCCGGTGGCACCCGCGAGTCTCCGAGGTCGAGAGCACGCTCGCGAGGA AGGTCTACGAGCGAGTCGCGAGGGACCGGGAGCGCGAGCTCCGCACCGAC CGCTGGCGGGGGTTCAAAATTGGCGCCGCCATGATAGGGGGGGGTACCCT CCTCGCGGTCACGGGCGGTCTGGCGGCCCCCGCGCTCGCGGCGGGTATAG CGGCGAGCTCGTCCGTCATCGGCGTCACCGCGGCAGCTACCCTCAGCGGC TTCGCCACGACGGCTTGGATGGCGACGTTGTTTGGGGCCGGTGGGGCGGG GCTGGTGGGGTACAAGATGGACAGGCGAACCAAGGGCGTCAAGGTACCGA CCGACTGACGCGTGCAGCAGTTAATTAGTGCCCGAACCTCTATTGTAGTC TTGGCCGAAAAGGCAGTATCTGCGGGGGGGGTTTTGACGCTAGTGGTGCT CAAGTTTTTCGATTCTGATACTTTTCGACGCTATGTCAGTTTCTTGCAGT AGCTGCCGAGTGCTTCAGTGCGGGCTCTATTGTATATTTCTTGCTTCGTT GTAGCTTGTTACGTTCGGCGTGTGGCGGGAGAGAGCGGAGTTTTTTTTTT ACTGGTGTTATTGTCGCACGTGGCGAGAGTGTAGCGATCGGGTTAGAGGT GCCGTGCTCAGCCTATTTTTGTGCACTGCTACTGACATTTGTGTGTGTGT GAAGGTCTTGCCATTTGTGAGCTCGCCCAACTTCGGCAGTCGGCCGGCTT GCAGCAGGTTGCGTACACGACGCTGGTGCGGAAAAATCTCACCGAGTCAG GACACGGACCCAATTTTTTCGATGTCCGAGAAAAGCGAGCTTCCACCCAC CGCGGGCTCTCCTACACCTGCTTGCTTGCATCTTGGAGAAACAACACGGG TCGTGACTTTTCTCGCCGATGTTTTGAGTCACGCTCTTTCACCATCTATC TCCTCCGAGAAGGCAACGTCCTTCAGCAGGAAAAGTGCTTTAGCAGGAAA AGTGCTTCAGCAGGAAAAGTCATTTAGCAGGAAAAGTCCTTTAGCAGGAA TAGTCCTTCAGCAGGAAAAGAGTCCTTCAGCAGGAAAAGTCCTTTATTAG CAGGACTGTCTTTACTACCACTACGGTAACACCCATGTCTGTGTACGACG AATGACCTGTAAACAAACCAACAGGAGTTTGAGTTCGAGTCCGAGACATC GGTGGGCGAGGAGATGTGCGTGTCGATCTGCGTCCCCGGCGTTCTCAAGG ATAAGGCGGATCTGCAGAGGGGGTGGGGGGTGGAGCCACGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15159:3..1343-

>mRNA_Ecto-sp13_S_contig15159.3887.1 ID=mRNA_Ecto-sp13_S_contig15159.3887.1|Name=mRNA_Ecto-sp13_S_contig15159.3887.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=510bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15159:3..1343- (Ectocarpus species13 EcNAP12_S_4_19m)
GATGCAAAACCCCGCAGGGTAACCTTCCGAAGGGTCTGCGACGCGATGCA
AGTCCGGTGGCACCCGCGAGTCTCCGAGGTCGAGAGCACGCTCGCGAGGA
AGGTCTACGAGCGAGTCGCGAGGGACCGGGAGCGCGAGCTCCGCACCGAC
CGCTGGCGGGGGTTCAAAATTGGCGCCGCCATGATAGGGGGGGGTACCCT
CCTCGCGGTCACGGGCGGTCTGGCGGCCCCCGCGCTCGCGGCGGGTATAG
CGGCGAGCTCGTCCGTCATCGGCGTCACCGCGGCAGCTACCCTCAGCGGC
TTCGCCACGACGGCTTGGATGGCGACGTTGTTTGGGGCCGGTGGGGCGGG
GCTGGTGGGGTACAAGATGGACAGGCGAACCAAGGGCGTCAAGGAGTTTG
AGTTCGAGTCCGAGACATCGGTGGGCGAGGAGATGTGCGTGTCGATCTGC
GTCCCCGGCGTTCTCAAGGATAAGGCGGATCTGCAGAGGGGGTGGGGGGT
GGAGCCACGG
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