mRNA_Ecto-sp13_S_contig15159.3887.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig15159.3887.1 vs. uniprot
Match: D7FP69_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP69_ECTSI) HSP 1 Score: 261 bits (667), Expect = 7.800e-79 Identity = 160/165 (96.97%), Postives = 160/165 (96.97%), Query Frame = 1
Query: 16 RVTFRRVCDAMQVRWHPRVSEVESTLARKVYERVARDRERELRTDRWRGFKIGAAMIGGGTLLAVTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXFATTAWMATLFGAGGAGLVGYKMDRRTKGVKEFEFESETSVGEEMCVSICVPGVLKDKADLQRGWGVEPR 510
RVTFRRVCDAMQVRWHPRVSEVESTLARKVYERVARDRERELRTDRWRGFKIGAAMIGGGTLLAVTG XXXXXXXXXXXXXXXXXXXXXXX FATTAWMATLFGAGGAGLVGYKMDRRTKGVKEFEFESETSVGEEMCVSICVPGVLKDKADLQRGWGVEPR
Sbjct: 122 RVTFRRVCDAMQVRWHPRVSEVESTLARKVYERVARDRERELRTDRWRGFKIGAAMIGGGTLLAVTGGLAXXXXXXXXXXXXXXXXXXXXXXXSGFATTAWMATLFGAGGAGLVGYKMDRRTKGVKEFEFESETSVGEEMCVSICVPGVLKDKADLQRGWGVEPR 286
BLAST of mRNA_Ecto-sp13_S_contig15159.3887.1 vs. uniprot
Match: W7TZH7_9STRA (Uncharacterized protein n=5 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TZH7_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 9.090e-15 Identity = 63/179 (35.20%), Postives = 91/179 (50.84%), Query Frame = 1
Query: 1 DAKPRRVTFRRVCDAMQVRWHPRVSEVESTLARKVYERVARDRERELRTDRWRGFKIGAAMIGGGTLLAVTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXFATTAWMATLFGAGGAGLVGYKMDRRTKGVKEFEF--------ESETSVGEEMCVSICVPG-VLKDKADLQRGWGVEPR 510
DA+ RR+ R DA ++ W ++ VE+ A +YE +E+E R KI AA +GGG LLA+TG +TA +ATLFGA GAGLVGYKM RRT + +FEF + E+ +G M + IC+ G +++D+++ +GVEPR
Sbjct: 156 DARTRRIMMRLASDAFEISWR-NIACVEAFTASYLYEIWEARQEKEKINKGLRYAKITAAAVGGGALLALTGGLAAPAIGIGLSAMSATGAVVAG-----LTSTASVATLFGASGAGLVGYKMRRRTAALDQFEFRHVEPSGDKKESDLGR-MAICICISGWLVEDESEYDTPFGVEPR 327
BLAST of mRNA_Ecto-sp13_S_contig15159.3887.1 vs. uniprot
Match: B5YMF2_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YMF2_THAPS) HSP 1 Score: 74.7 bits (182), Expect = 1.790e-12 Identity = 48/120 (40.00%), Postives = 62/120 (51.67%), Query Frame = 1
Query: 157 RGFKIGAAMIGGGTLLAVTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXFATTAWMATLFGAGGAGLVGYKMDRRTKGVKEFEFESE--TSVGE-EMCVSICVPGVLKDKADLQRGWGVEP 507
RG KIG A G TL A+TG + A ++T+FG GGAGL GYKM RRTKG+ EF+F+ E + GE E+ ++C+ G L+D D QR WGV P
Sbjct: 973 RGLKIGTAGAVGATLFALTGGLAAPGIAAGLAAVAGGSAVAAGVSTVLTSAAA-ISTIFGVGGAGLAGYKMHRRTKGLTEFDFQKEGMSKNGEAELFSTVCISGWLRDARDFQRPWGVFP 1091
BLAST of mRNA_Ecto-sp13_S_contig15159.3887.1 vs. uniprot
Match: A0A7S2PUT1_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PUT1_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 3.290e-12 Identity = 46/121 (38.02%), Postives = 61/121 (50.41%), Query Frame = 1
Query: 157 RGFKIGAAMIGGGTLLAVTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXFATTAWMATLFGAGGAGLVGYKMDRRTKGVKEFEFESETSVGE----EMCVSICVPGVLKDKADLQRGWGVEP 507
RG K+G A G TL A+TG + A + T+FG GGAGL GYKM RRTKG+ EF+F+ E +G+ E+ ++C+ G L+D D QR WGV P
Sbjct: 626 RGIKVGTAGAVGATLFALTGGLAAPGIAAGLAAVAGGSALAAGVTTVLSSAAA-ITTIFGVGGAGLAGYKMHRRTKGLTEFDFQKE-QLGKNSEAELFSTVCISGWLRDARDFQRPWGVSP 744
BLAST of mRNA_Ecto-sp13_S_contig15159.3887.1 vs. uniprot
Match: A0A1V9YBI8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YBI8_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 4.050e-12 Identity = 52/115 (45.22%), Postives = 60/115 (52.17%), Query Frame = 1
Query: 157 RGFKIGAAMIGGGTLLAVTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXFATTAWMATLFGAGGAGLVGYKMDRRTKGVKEFEFESETSVGEEMCVSICVPGVLK-DKADLQRGWG 498
R KIG A + GGTLLA+TG XX TA + LFG GAGLVG+K DRRT G+K+FEFE S G M V ICV G L D+AD +R WG
Sbjct: 207 RNLKIGTAAVAGGTLLALTGGLVAPALAAGFTALGGVGAVVGTXXGSAGGITA-ASVLFGTAGAGLVGFKTDRRTSGIKQFEFEL-LSAGSGMHVYICVSGWLDHDEADFKRPWG 319
BLAST of mRNA_Ecto-sp13_S_contig15159.3887.1 vs. uniprot
Match: T0QKH0_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QKH0_SAPDV) HSP 1 Score: 71.6 bits (174), Expect = 1.900e-11 Identity = 51/116 (43.97%), Postives = 61/116 (52.59%), Query Frame = 1
Query: 157 RGFKIGAAMIGGGTLLAVTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXFATTAWMATLFGAGGAGLVGYKMDRRTKGVKEFEFESETSVGEEMCVSICVPGVLKD--KADLQRGWG 498
R KIG A + GGTLLA+TG XXX TA LFG GAGL GYK DRRT G+K+FEFE T+ G M V IC+ G L++ +AD +R WG
Sbjct: 224 RNLKIGTAAVAGGTLLALTGGLVAPALAAGFTALGGVGAVVGXXXASAGGVTA-ATVLFGTAGAGLAGYKTDRRTSGIKQFEFELLTA-GSGMNVYICISGWLENNSEADFKRPWG 337
BLAST of mRNA_Ecto-sp13_S_contig15159.3887.1 vs. uniprot
Match: A0A7S1YH88_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YH88_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 2.320e-10 Identity = 34/74 (45.95%), Postives = 43/74 (58.11%), Query Frame = 1
Query: 325 TLFGAGGAGLVGYKMDRRTKGVKEFEFESETS-------------VGEEMCVSICVPGVLKDKADLQRGWGVEP 507
T+FG GGAGL YKM RRTKG+ EFEF+ E+ + E+ +ICV G L+D +D QR WG P
Sbjct: 1 TIFGVGGAGLAAYKMQRRTKGLTEFEFQKESGLVRNQEGHSENAPIEAELFTTICVSGWLRDYSDFQRPWGTTP 74
BLAST of mRNA_Ecto-sp13_S_contig15159.3887.1 vs. uniprot
Match: A0A1W0AA63_9STRA (B2-adapt-app_C domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AA63_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 3.400e-10 Identity = 53/116 (45.69%), Postives = 61/116 (52.59%), Query Frame = 1
Query: 157 RGFKIGAAMIGGGTLLAVTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXFATTAWMATLFGAGGAGLVGYKMDRRTKGVKEFEFESETSVGEEMCVSICVPGVLKDKA--DLQRGWG 498
R KIG A + GGTLLA+TG XXXXXXX LFG GAGL GYK DRRT G+K+FEFE T+ G M V IC+ G L+D D +R WG
Sbjct: 218 RNLKIGTAAVAGGTLLALTGGLVAPALAAGFTALGGVGAVVXXXXXXXXXXXX-XTVLFGTAGAGLAGYKTDRRTSGIKQFEFELLTA-GSGMSVYICISGWLEDNVQDDFKRPWG 331
BLAST of mRNA_Ecto-sp13_S_contig15159.3887.1 vs. uniprot
Match: A0A6G0WSY3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WSY3_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 6.490e-9 Identity = 44/116 (37.93%), Postives = 53/116 (45.69%), Query Frame = 1
Query: 157 RGFKIGAAMIGGGTLLAVTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXFATTAWMATLFGAGGAGLVGYKMDRRTKGVKEFEFESETSVGEEMCVSICVPGVL--KDKADLQRGWG 498
R IG A + GGTLLA+TG A LFG GAGL GYK DRRT G+K FEFE T G+ M V ICV G + K+K + + +G
Sbjct: 223 RNLAIGGAAVAGGTLLALTGGLIATPLLAAGFLGLGTTGAAIGTALGSSAAVTAATVLFGTAGAGLAGYKADRRTLGIKHFEFELLTP-GDGMHVYICVAGWIESKEKTEYSKAFG 337
BLAST of mRNA_Ecto-sp13_S_contig15159.3887.1 vs. uniprot
Match: A0A7S4T9W3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T9W3_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 3.110e-8 Identity = 54/138 (39.13%), Postives = 71/138 (51.45%), Query Frame = 1
Query: 121 RDRERELRTDRWRGFKIGAAMIGGGTLLAVTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXFATTAWMATLFGAGGAGLVGYKMDRRTKGVKEFEFESETS-------VGEE-----MCVSICVPGVLKDKADLQRGWG 498
R RE+ R RG KIG A + GTLLAVTG XXXXXX A+TA ++T+FG GG LV KMD+RT+G+ EF+ E + GEE + ++C+ G L+D D +R WG
Sbjct: 373 RKREKTNRQKVIRGLKIGTAGVVAGTLLAVTGGLAAPAVAAGIXXXXXXTVIATVATIA-LASTAAVSTVFGVGGGALVAAKMDKRTRGLTEFQIRLEEARDTRDKTKGEEEKKAELYRTLCISGWLRDDNDFRRPWG 509 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15159.3887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig15159.3887.1 >prot_Ecto-sp13_S_contig15159.3887.1 ID=prot_Ecto-sp13_S_contig15159.3887.1|Name=mRNA_Ecto-sp13_S_contig15159.3887.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=170bp DAKPRRVTFRRVCDAMQVRWHPRVSEVESTLARKVYERVARDRERELRTDback to top mRNA from alignment at Ecto-sp13_S_contig15159:3..1343- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig15159.3887.1 ID=mRNA_Ecto-sp13_S_contig15159.3887.1|Name=mRNA_Ecto-sp13_S_contig15159.3887.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1341bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15159:3..1343- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15159:3..1343- >mRNA_Ecto-sp13_S_contig15159.3887.1 ID=mRNA_Ecto-sp13_S_contig15159.3887.1|Name=mRNA_Ecto-sp13_S_contig15159.3887.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=510bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15159:3..1343- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |