mRNA_Ecto-sp13_S_contig15034.3805.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15034.3805.1
Unique NamemRNA_Ecto-sp13_S_contig15034.3805.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15034.3805.1 vs. uniprot
Match: A0A1Q5SPN9_9EURO (Uncharacterized protein n=1 Tax=Penicillium subrubescens TaxID=1316194 RepID=A0A1Q5SPN9_9EURO)

HSP 1 Score: 62.8 bits (151), Expect = 1.090e-9
Identity = 30/57 (52.63%), Postives = 35/57 (61.40%), Query Frame = 1 
Query:   16 GKTLKYGRARSIMCLEDLEVILCPLCSLALLLFWRFDVLKEEVPDFTDRTKWYRERV 186
            GKTL+ GR      L   + +LCPL SLAL LFWRFD+  E  PDF  R  WYR R+
Sbjct:  296 GKTLEAGRTDYTGILRHRDPVLCPLASLALYLFWRFDMAGEPPPDFNSRRSWYRRRL 352
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BLAST of mRNA_Ecto-sp13_S_contig15034.3805.1 vs. uniprot
Match: D7FXC9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXC9_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 4.420e-8
Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:  133 KEEVPDFTDRTKWYRERVFTFADGGGEYTAKDQ 231
            +++ P FTDRTKWYRERVFTFADGG EYTAKD+
Sbjct:   81 RKKSPTFTDRTKWYRERVFTFADGG-EYTAKDE 112
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15034.3805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A1Q5SPN9_9EURO1.090e-952.63Uncharacterized protein n=1 Tax=Penicillium subrub... [more]
D7FXC9_ECTSI4.420e-878.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15034contigEcto-sp13_S_contig15034:3529..3762 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size234
Hectar predicted targeting categoryother localisation
Exons1
Cds size234
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462800.9072497-CDS-Ecto-sp13_S_contig15034:3528..37621681462800.9072497-CDS-Ecto-sp13_S_contig15034:3528..3762Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15034 3529..3762 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15034.3805.1prot_Ecto-sp13_S_contig15034.3805.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15034 3529..3762 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15034.3805.1

>prot_Ecto-sp13_S_contig15034.3805.1 ID=prot_Ecto-sp13_S_contig15034.3805.1|Name=mRNA_Ecto-sp13_S_contig15034.3805.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=78bp
MGTRTGKTLKYGRARSIMCLEDLEVILCPLCSLALLLFWRFDVLKEEVPD
FTDRTKWYRERVFTFADGGGEYTAKDQ*
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mRNA from alignment at Ecto-sp13_S_contig15034:3529..3762+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15034.3805.1 ID=mRNA_Ecto-sp13_S_contig15034.3805.1|Name=mRNA_Ecto-sp13_S_contig15034.3805.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15034:3529..3762+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGACCAGGACGGGAAAGACCTTGAAGTATGGGCGCGCGAGGTCAAT
CATGTGCTTGGAGGACCTCGAAGTCATCTTGTGCCCGCTCTGTAGCCTCG
CTCTGCTCTTGTTCTGGAGATTTGACGTGCTCAAGGAAGAAGTCCCCGAC
TTCACCGACCGAACCAAGTGGTACCGGGAGCGCGTATTCACATTCGCCGA
CGGAGGTGGTGAATATACCGCAAAAGACCAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15034:3529..3762+

>mRNA_Ecto-sp13_S_contig15034.3805.1 ID=mRNA_Ecto-sp13_S_contig15034.3805.1|Name=mRNA_Ecto-sp13_S_contig15034.3805.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15034:3529..3762+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGACCAGGACGGGAAAGACCTTGAAGTATGGGCGCGCGAGGTCAAT
CATGTGCTTGGAGGACCTCGAAGTCATCTTGTGCCCGCTCTGTAGCCTCG
CTCTGCTCTTGTTCTGGAGATTTGACGTGCTCAAGGAAGAAGTCCCCGAC
TTCACCGACCGAACCAAGTGGTACCGGGAGCGCGTATTCACATTCGCCGA
CGGAGGTGGTGAATATACCGCAAAAGACCAGTAG
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