mRNA_Ecto-sp13_S_contig14998.3782.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14998.3782.1
Unique NamemRNA_Ecto-sp13_S_contig14998.3782.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14998.3782.1 vs. uniprot
Match: D7G781_ECTSI (PAP_fibrillin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G781_ECTSI)

HSP 1 Score: 451 bits (1160), Expect = 2.770e-158
Identity = 232/254 (91.34%), Postives = 237/254 (93.31%), Query Frame = 1
Query:    1 MWNAVWVLLLITYPPVLSFSFAGVALQGNKAGVRRAARRVLVETAASSAEAGPPPAIGGDGPANDGSAAAELVTSLLGKIEGTNRGVDCTPEQQKEIDGIIDQLNTLGADKDWLNDSRVFGNYNVAYVSSGPSQRGNPAGGRWRGRVGRSLFSRTEEMFQHLLEPATAVNMIVFRAFGLLTGCVTLRGDFKAIPDKPNFVKASFGPPLINFLGKHGLTIRSGPKSSVRLAATYVDERVSARLLGGXXXXGLFLF 762
            MWNAVWVLLLITYPPVLSFSFAGVALQ NKA +RRAARRV VETAASSAEAGPPPAIGGDGPANDGSAAAELVTSLLGKIEGTNRGVDCTPEQQKEIDGIIDQLNTLGADKDWLNDSRVFGNYNVAYVSSGPSQRGNPAGGRWRGRVGRSLF RTEEMFQHL+EP TAVNM+VFRAFGLL GCVTLRGDFKAIPDKPNFVKASFGPPLINFLGK GLTIRSGPKSSVRLAATYVDER+    LG      LF+F
Sbjct:    1 MWNAVWVLLLITYPPVLSFSFAGVALQSNKAAIRRAARRVSVETAASSAEAGPPPAIGGDGPANDGSAAAELVTSLLGKIEGTNRGVDCTPEQQKEIDGIIDQLNTLGADKDWLNDSRVFGNYNVAYVSSGPSQRGNPAGGRWRGRVGRSLF-RTEEMFQHLVEPTTAVNMVVFRAFGLLKGCVTLRGDFKAIPDKPNFVKASFGPPLINFLGKRGLTIRSGPKSSVRLAATYVDERIR---LGMGGRGSLFVF 250          
BLAST of mRNA_Ecto-sp13_S_contig14998.3782.1 vs. uniprot
Match: A0A6H5JIG4_9PHAE (PAP_fibrillin domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIG4_9PHAE)

HSP 1 Score: 445 bits (1144), Expect = 5.310e-157
Identity = 226/238 (94.96%), Postives = 230/238 (96.64%), Query Frame = 1
Query:    1 MWNAVWVLLLITYPPVLSFSFAGVALQGNKAGVRRAARRVLVETAASSAEAGPPPAIGGDGPANDGSAAAELVTSLLGKIEGTNRGVDCTPEQQKEIDGIIDQLNTLGADKDWLNDSRVFGNYNVAYVSSGPSQRGNPAGGRWRGRVGRSLFSR-TEEMFQHLLEPATAVNMIVFRAFGLLTGCVTLRGDFKAIPDKPNFVKASFGPPLINFLGKHGLTIRSGPKSSVRLAATYVDER 711
            MWNAVW+LLL TYPPVLSFSFAGVALQ NKAGVRRAA RVLVETAASSAEAGPPP IGGD PANDGSAAAELVTSLLGKIEGTNRGVDCTPEQQKEIDGIIDQLNTLGADKDWLNDSRVFGNYNVAYVSSGPSQRGNPAGGRWRGRVGRSLF + TEEMFQHL+EPATAVNM+VFRAFGLL GCVTLRGDFKAIPDKPNFVKASFGPPLINFLGKHGLTIRSGPKSSVRLAATYVDER
Sbjct:    1 MWNAVWILLLTTYPPVLSFSFAGVALQSNKAGVRRAAPRVLVETAASSAEAGPPPPIGGDLPANDGSAAAELVTSLLGKIEGTNRGVDCTPEQQKEIDGIIDQLNTLGADKDWLNDSRVFGNYNVAYVSSGPSQRGNPAGGRWRGRVGRSLFRQATEEMFQHLVEPATAVNMVVFRAFGLLKGCVTLRGDFKAIPDKPNFVKASFGPPLINFLGKHGLTIRSGPKSSVRLAATYVDER 238          
BLAST of mRNA_Ecto-sp13_S_contig14998.3782.1 vs. uniprot
Match: A0A7S2Y058_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y058_9STRA)

HSP 1 Score: 157 bits (396), Expect = 4.150e-42
Identity = 81/188 (43.09%), Postives = 117/188 (62.23%), Query Frame = 1
Query:  211 ELVTSLLGKIEGTNRGVDCTPEQQKEIDGIIDQLNTLGADKDWLNDSRVFGNYNVAYVSSG--PSQRGNPAGGRWRGRVGRSLFSRTEEMFQHLLEPATAVNMIVFRAFGLLTGCVTLRGDFKAI--PDKPNFVKASFGPPLINFLGKHGLTIRSGPKSSVRLAATYVDERVSARLLGGXXXXGLFLF 762
            + +  +L  +  T+RGV  + EQ+ +IDG+++++  L  + D L+D R+FGNYNVAYVS+G  PSQ+GNPAGG +RG++GR  F +T  +FQHL+ P   +NM+ F+  G   GC TL G F+ I  PD PN V+A F PP +        T++ GP+S V L   YVD++V    +G      LFLF
Sbjct:  114 QAIEEILKIVPETDRGVLASEEQRTKIDGLLEKVENLNTNADTLSDERIFGNYNVAYVSTGKAPSQKGNPAGGGFRGKIGRKFF-QTTAVFQHLVAPNQVINMVQFKMLGRFPGCTTLMGTFEKINVPDLPNAVRAKFQPPRVTIGSSGKFTLQIGPQSQVTLGTPYVDDKVR---VGRGGRGSLFLF 297          
BLAST of mRNA_Ecto-sp13_S_contig14998.3782.1 vs. uniprot
Match: A0A7S3UXI2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXI2_HETAK)

HSP 1 Score: 150 bits (379), Expect = 5.330e-41
Identity = 83/182 (45.60%), Postives = 108/182 (59.34%), Query Frame = 1
Query:  217 VTSLLGKIEGTNRGVDCTPEQQKEIDGIIDQLNTLGADKDWLNDSRVFGNYNVAYVSSGPSQRGNPAGGRWRGRVGRSLFSRTEEMFQHLLEPATAVNMIVFRAFGLLTGCVTLRGDFKAIPDKPNFVKASFGPPLINFLGKHGLTIRSGPKSSVRLAATYVDERVSARLLGGXXXXGLFLF 762
            V  LL  I GT+ G    P ++ EID +I+ L+  G  +  L    ++GNYNVAYVSSG SQRGNPAGGR+RG +G++LF RT  +FQHL+EP   VNM+ F+  G++ GC TL G F      PN V+A F PP + F      T+  GP S V L+  Y+D RV    LG      LF+F
Sbjct:   71 VDQLLELIRGTDAGSAVAPGKRAEIDALIEALSAAGGGQRNLARPEIYGNYNVAYVSSGGSQRGNPAGGRFRGALGKALF-RTTNLFQHLVEPNRVVNMVQFKLLGVVEGCTTLAGTFAPEGRDPNTVRARFQPPRVTFGRSGRCTLELGPPSEVVLSTPYLDGRVR---LGRGGRGSLFVF 248          
BLAST of mRNA_Ecto-sp13_S_contig14998.3782.1 vs. uniprot
Match: A0A383V4T8_TETOB (PAP_fibrillin domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383V4T8_TETOB)

HSP 1 Score: 147 bits (370), Expect = 1.880e-38
Identity = 86/201 (42.79%), Postives = 123/201 (61.19%), Query Frame = 1
Query:  196 GSAAAELVTSLLGKIEGTNRGVDCTPEQQKEIDGIIDQLNTLGADKDW--LNDSRVFGNYNVAYVSSGPSQRGNPAGGRWRGRVGRSLFSRTEEMFQHLLEPATAVNMIVFRAFGLLTGCVTLRGDF----------KAIPDKPNFVKASFGPPLINFLGKHGLTIRSGPKSSVRLAATYVDERVSARLLGGXXXXGLFLF 762
            G AAA++V+++L K++GT+ G+   PEQ++E+D +I QL   G  +    + +  +FGNYNVAY SSG  QRG PAGGR+RGR+GR LF +T  +FQ +L+P  A N + F+ FG+L G V LRG            +    + + V+  F PP+++ LG  GL  R GP SSV+L+  Y+DERV    LG      LF+F
Sbjct:   47 GPAAADIVSTILDKVQGTDGGISLQPEQKREVDALISQLEAAGRSQQPRPMQNPLLFGNYNVAYTSSGDDQRGQPAGGRFRGRLGRLLF-QTTGVFQSVLQPDIATNKVTFKLFGVLPGAVGLRGTVVPVQAGQPHGRGTAGEGDTVRVLFEPPVLS-LGS-GLHFRIGPPSSVQLSTPYLDERVR---LGRGSRGSLFVF 241          
BLAST of mRNA_Ecto-sp13_S_contig14998.3782.1 vs. uniprot
Match: D8TNC6_VOLCA (PAP_fibrillin domain-containing protein (Fragment) n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TNC6_VOLCA)

HSP 1 Score: 137 bits (346), Expect = 7.270e-36
Identity = 89/213 (41.78%), Postives = 125/213 (58.69%), Query Frame = 1
Query:  133 AASSAEAGPPPAIGGDGPANDGSAAAELVTSLLGKIEGTNRGVDCTPEQQKEIDGIIDQLNTLGADKDW--LNDSRVFGNYNVAYVSSGPSQR-GNPAGGRWRGRVGRSLFSRTEEMFQHLLEPATAVNMIVFRAFGLLTGCVTLRGDFKAIPDKPNFVKASFGPPLINFLGKHGLTIRSGPKSSVRLAATYVDERVSARLLGGXXXXGLFLF 762
            AASSA   P PA     P++    A +LV  +L  IEGT+ G+  +P+ +  +D ++++L  LGA +    L++  ++GNYNVAY S G SQ  G PAGGR+RGR+GR+LF RT  +FQ +L+P  A N + FR FG L G V LRG      D  + V+  F PP+++   +  L ++ G  SSV L  TY+DERV    LG      LF+F
Sbjct:   59 AASSAAVSPAPAETVPQPSSSADEARQLVDQVLKTIEGTDSGLQISPQARAHVDALLERLEVLGAAQQPRPLDNPLLWGNYNVAYTSVGKSQEHGEPAGGRFRGRIGRALF-RTAGLFQSVLKPDLATNKVEFRLFGFLPGYVGLRGKVLPQGDTGDTVQVLFEPPMLSIANR--LHLKIGRFSSVVLTTTYLDERVR---LGRGSRGSLFVF 265          
BLAST of mRNA_Ecto-sp13_S_contig14998.3782.1 vs. uniprot
Match: A0A250WT81_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WT81_9CHLO)

HSP 1 Score: 135 bits (340), Expect = 1.280e-34
Identity = 79/187 (42.25%), Postives = 112/187 (59.89%), Query Frame = 1
Query:  214 LVTSLLGKIEGTNRGVDCTPEQQKEIDGIIDQLNTLGADKDWLNDSRVFGNYNVAYVSS--GPSQRGNPAGGRWRGRVGRSLFSRTEEMFQHLL--EPATAVNMIVFRAFGLLTGCVTLRGDFKAIPDKPNFVKASFGPPLINFLGKHGLTIRSGPKSSVRLAATYVDERVSARLLGGXXXXGLFLF 762
            LV  ++ ++EGT+ G++ +  Q+ EID ++D+L   G     + D R+ GNY V Y S+   P Q+G  AGGR+RG +GRSLF +T  +FQ +L  +P  AVN + F   GL+ G V LRG  +   D    V   F PP+++F GK  L +R GPKSSV+LA TY+DER+    +G      LFLF
Sbjct:   47 LVDDIICRVEGTDGGINLSDAQKDEIDLLLDKLREAGKGSRPVKDPRLIGNYVVVYTSTRRAPGQKGQAAGGRFRGALGRSLF-KTTGVFQSVLAGDPPIAVNKVAFNLLGLIPGYVGLRGRVEPFGDDDESVSVYFDPPILSFAGK--LHLRIGPKSSVQLATTYLDERIR---VGLGSRGSLFLF 227          
BLAST of mRNA_Ecto-sp13_S_contig14998.3782.1 vs. uniprot
Match: A0A8J4AX21_9CHLO (PAP_fibrillin domain-containing protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AX21_9CHLO)

HSP 1 Score: 134 bits (336), Expect = 2.530e-33
Identity = 81/189 (42.86%), Postives = 114/189 (60.32%), Query Frame = 1
Query:  205 AAELVTSLLGKIEGTNRGVDCTPEQQKEIDGIIDQLNTLGADKDW--LNDSRVFGNYNVAYVSSGPSQ-RGNPAGGRWRGRVGRSLFSRTEEMFQHLLEPATAVNMIVFRAFGLLTGCVTLRGDFKAIPDKPNFVKASFGPPLINFLGKHGLTIRSGPKSSVRLAATYVDERVSARLLGGXXXXGLFLF 762
            A  +V  +L  IE T+ G+  +PE +  +D ++D+L TLG  +    L++  ++GNYNVAY S G SQ RG PAGGR+RGR+GR+LF RT  +FQ +L+P  A N + FR FG L G V LRG      D  + V+  F PP+++    + L ++ G  SSV L+ TY+DERV    LG      LF+F
Sbjct:   84 ARHIVDEVLEAIEATDSGLQISPEARTRVDSLLDRLETLGTTQQPRPLDNPLLWGNYNVAYTSVGRSQERGEPAGGRFRGRIGRALF-RTAGLFQSVLKPDIATNKVEFRLFGFLPGYVGLRGRVLPQGDNGDTVQVIFEPPVLSIA--NSLHLKIGKPSSVVLSTTYLDERVR---LGKGSRGSLFVF 266          
BLAST of mRNA_Ecto-sp13_S_contig14998.3782.1 vs. uniprot
Match: A0A835XUG7_9CHLO (PAP_fibrillin domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XUG7_9CHLO)

HSP 1 Score: 134 bits (337), Expect = 3.930e-33
Identity = 80/188 (42.55%), Postives = 116/188 (61.70%), Query Frame = 1
Query:  205 AAELVTSLLGKIEGTNRGVDCTPEQQKEIDGIIDQLNTLGADKDW--LNDSRVFGNYNVAYVSSGPSQRGNPAGGRWRGRVGRSLFSRTEEMFQHLLEPATAVNMIVFRAFGLLTGCVTLRGDFKAIPDKPNFVKASFGPPLINFLGKHGLTIRSGPKSSVRLAATYVDERVSARLLGGXXXXGLFLF 762
            A  +V  +L  I  T+ G   +PE++ E+D +++QL  +GA +    L++  ++GNYNVAY SSG  Q G PAGGR+RGRVG++LF RT  +FQ +L+P  A N + F+ FG + G V LRG      D+ + V+  F PP++  +G+ GL +R G  SSV L+ TY+DERV    LG      LF+F
Sbjct:   58 ATAIVDRILESIRDTDSGAAISPEKRAEVDELLEQLEQIGAAQQPRPLDNPLLWGNYNVAYTSSGKGQYGEPAGGRFRGRVGKALF-RTAGLFQSVLQPDIATNKVEFKLFGFIPGFVGLRGKVLPEGDEGDTVQVLFEPPVLT-IGE-GLHLRIGRTSSVVLSTTYLDERVR---LGKGSRGSLFVF 239          
BLAST of mRNA_Ecto-sp13_S_contig14998.3782.1 vs. uniprot
Match: A0A2K3D377_CHLRE (PAP_fibrillin domain-containing protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3D377_CHLRE)

HSP 1 Score: 133 bits (334), Expect = 4.130e-33
Identity = 91/221 (41.18%), Postives = 128/221 (57.92%), Query Frame = 1
Query:  115 RVLVETAASSA--EAGPPPAIGGDGPANDGSAAAELVTSLLGKIEGTNRGVDCTPEQQKEIDGIIDQLNTLGADKDW--LNDSRVFGNYNVAYVSSGPSQ-RGNPAGGRWRGRVGRSLFSRTEEMFQHLLEPATAVNMIVFRAFGLLTGCVTLRGDFKAIPDKPNFVKASFGPPLINFLGKHGLTIRSGPKSSVRLAATYVDERVSARLLGGXXXXGLFLF 762
            +V +E+ AS+A  +A P  A+       D   A  +V  +L  IEGT+ G+   P  +K +DG++D+L  LGA +    L+   ++GNYNVAY S G SQ RG PAGGR+RG++GR+LF RT  +FQ +L+P  A N + F+ FG+L G V LRG      D  + V+  F PP++    K  L I  G  SSV L+ TY+DER+    LG      LF+F
Sbjct:   51 KVALESPASNAATDAAPAAAVAHAAAPED---ARAIVDEVLKAIEGTDSGLSIDPATRKHVDGLLDKLEALGAAQQPRPLDSPLLWGNYNVAYTSVGRSQERGEPAGGRFRGKIGRALF-RTAGLFQSVLQPDIATNKVEFKLFGMLPGFVGLRGRVVPQGDAGDTVQVLFEPPVLAIADKLFLCI--GRTSSVVLSTTYLDERIR---LGKGSRGSLFVF 262          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14998.3782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G781_ECTSI2.770e-15891.34PAP_fibrillin domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JIG4_9PHAE5.310e-15794.96PAP_fibrillin domain-containing protein (Fragment)... [more]
A0A7S2Y058_9STRA4.150e-4243.09Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3UXI2_HETAK5.330e-4145.60Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A383V4T8_TETOB1.880e-3842.79PAP_fibrillin domain-containing protein n=1 Tax=Te... [more]
D8TNC6_VOLCA7.270e-3641.78PAP_fibrillin domain-containing protein (Fragment)... [more]
A0A250WT81_9CHLO1.280e-3442.25Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A8J4AX21_9CHLO2.530e-3342.86PAP_fibrillin domain-containing protein n=1 Tax=Vo... [more]
A0A835XUG7_9CHLO3.930e-3342.55PAP_fibrillin domain-containing protein n=1 Tax=Ed... [more]
A0A2K3D377_CHLRE4.130e-3341.18PAP_fibrillin domain-containing protein n=2 Tax=Ch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14998contigEcto-sp13_S_contig14998:622..4226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score452.6
Seed ortholog evalue1.2e-124
Seed eggNOG ortholog2880.D7G781
Model size762
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009534,GO:0009536,GO:0009579,GO:0009941,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
Exons5
EggNOG free text desc.PAP_fibrillin
EggNOG OGs28JTJ@1,2QS7D@2759
Ec32 ortholog descriptionPlastid lipid-associated protein/fibrillin conserved domain
Ec32 orthologEc-01_010730.1
Cds size762
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462798.8853395-CDS-Ecto-sp13_S_contig14998:621..7111681462798.8853395-CDS-Ecto-sp13_S_contig14998:621..711Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14998 622..711 +
1681462798.8969812-CDS-Ecto-sp13_S_contig14998:1715..19341681462798.8969812-CDS-Ecto-sp13_S_contig14998:1715..1934Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14998 1716..1934 +
1681462798.9053001-CDS-Ecto-sp13_S_contig14998:2457..26061681462798.9053001-CDS-Ecto-sp13_S_contig14998:2457..2606Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14998 2458..2606 +
1681462798.9133816-CDS-Ecto-sp13_S_contig14998:3135..32501681462798.9133816-CDS-Ecto-sp13_S_contig14998:3135..3250Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14998 3136..3250 +
1681462798.9224288-CDS-Ecto-sp13_S_contig14998:4037..42261681462798.9224288-CDS-Ecto-sp13_S_contig14998:4037..4226Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14998 4038..4226 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14998.3782.1prot_Ecto-sp13_S_contig14998.3782.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14998 622..4226 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14998.3782.1

>prot_Ecto-sp13_S_contig14998.3782.1 ID=prot_Ecto-sp13_S_contig14998.3782.1|Name=mRNA_Ecto-sp13_S_contig14998.3782.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=254bp
MWNAVWVLLLITYPPVLSFSFAGVALQGNKAGVRRAARRVLVETAASSAE
AGPPPAIGGDGPANDGSAAAELVTSLLGKIEGTNRGVDCTPEQQKEIDGI
IDQLNTLGADKDWLNDSRVFGNYNVAYVSSGPSQRGNPAGGRWRGRVGRS
LFSRTEEMFQHLLEPATAVNMIVFRAFGLLTGCVTLRGDFKAIPDKPNFV
KASFGPPLINFLGKHGLTIRSGPKSSVRLAATYVDERVSARLLGGGGGGG
LFLF
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mRNA from alignment at Ecto-sp13_S_contig14998:622..4226+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14998.3782.1 ID=mRNA_Ecto-sp13_S_contig14998.3782.1|Name=mRNA_Ecto-sp13_S_contig14998.3782.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3605bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14998:622..4226+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGGAACGCGGTGTGGGTACTCCTGCTCATCACATACCCACCGGTGCT CTCCTTCTCATTTGCTGGGGTTGCACTCCAAGGCAACAAGGTATGACACC GCGTTCGTTCGGATTTTCGTTCACATCCAGACGTTGAACGAGATACCTGC TCATGGGTTCCAACGATGTTTCAATACAAAGCGCATGTTTCAAACAAAAA GCAATGACGACTGTTGTTACACGGGGATAAGTCCACCGGAATTCCAGAGT CGCATGGTTGCGTTAGTCATTGGTCGCATTGGATTATGGTCGGGCCGGCG ACTTGTATGCAAAAGGTACCAAACTGCTGGCACACAGTACCACCGGCTCC CACCGCCCGCCTTCAGAGAAACACCTGTTTTGGAGCGAGGCTCCAAGCCG TACAGCAGTGTCTCAACGTCTCAACGATTGGGAACATGCTACATAGCTAA GGCATCGCATGGAATTTAGAATTTAGTGTGGTGCCCGCGACTGACCCCAT TATCTACGCCCATCCCTTGTTTAGCTTCAACAATATGCACCTCGGTTGCT GTGAAGCGCGCGCCATGAACAACAGTATGTACAGAGTAGTGCCGGCCAAC AGCTTGGATATACTATTGTTCGAGGGTTCTTGACTCGCCAACTGAGAAGT GAAACACGCGGAATATCATCGAACGAATTAGTTCTGTACTGCTCACCGGC CGTCCGATCAGCGCGAAAAAGCGCTTGTGCCCCCTCTTATCACACCCCCC GTGACACTCTTCAGGCACCCGATGTGTGTGCGCGTGGACGGAAACACAGC TCGGCCCGATCGTTCTCAATATGTATAACGAGGGCTGTGTCGGGTTGACC CTTACCACGTGATGTACCTTGAAGGGGACAACGGCGCATACTCTCATCCT GTGCCTGAGTGCTGTACGATTCACGATACACGCAAGGGGTCGGCGTGAAA ACTACCTGTCGTCCCTGTGTTCAAACTCCACACCAACGCAGATTTCGCGT TCCTCCAACGACGACAAACTGGCAAGATATATTTCTTGGAAAATATACAC GCAACACACACAATAACACTAGCCGTTCTACATTTTATTGGTAGGCAGGG GTTCGGAGAGCGGCGCGGAGGGTGTTGGTGGAGACGGCCGCGTCGTCTGC GGAGGCCGGGCCACCTCCAGCGATCGGCGGCGATGGTCCTGCGAATGACG GGAGCGCGGCGGCGGAGCTCGTGACCTCTCTGCTGGGGAAGATCGAGGGC ACGAACAGAGGAGTGGACTGCACGCCCGAACAACAGAAGGAGATTGATGG AATCATCGACCAGGTCTGCCTAAGATCCGTCAACCGGCGGCAGCTTGTTT TTCCTCTGCTGAGTCTGACTCGTGTATTGTTGCAACCTAAAAGGGGGCAG TTGAGGAACGAGCAGAGTCAGGACTCCTTCCCACTCGGGTGCCACCTCGA ACGCCTTCCCATTTGTTTTCCTCGTTGCTATCGACGGTGCAGCAGCAGCA GTGTCTAATTGCACCTAACACCTAACACAGGTGTGCACTCAAAACCGGAT GTCGTGGTTCGAAGTTTACAGAGCCGAGAGTGTTTGAATTGTGGCACGTG AATGCCATCCCCTGAAAACGCGTCCATCCATGCCTTTTTTTGCTCAACCA ACATGTCTGAGATAGATGCACGGTTTGGGTGTATTGTATCCTTCGTTCTC TCGTTGCTTATTTGATAGGCGACGCATCATCAGGGGTAAGCCTGCTGCTC GCTGTCCCGTCGGCAAACTGATCCCAAGGCTGCTAACCCCACCTGTCCCA CGGCGCAACCACGGTGCCGCCGTGTACTGCCGACAGCTCAACACCTTGGG CGCGGACAAAGACTGGTTGAACGACAGTCGCGTCTTCGGCAACTACAACG TTGCCTACGTGAGCTCGGGCCCCTCGCAGCGGGGTAACCCAGCGGGAGGC CGTTGGAGGGGCCGGGTAGGCCGCTCTCTATTCAGGTAAGGGTCCCCCTC CCACGTCCTACCGTTGTATTCCGCTTTGCTACAAGGAAAAGCTTGCTGGC ACCGCGGTAAATGGGTGCATCTGTGTGTGTCTGAAGCTTCGGTGGGCGAC CAGTCAGCGGCGTTCTGTATGCACAAATCGATCCTGTGCGTCTTGTTGAA AAAAGTCTCAACTCTGGCAGCTATAGCCAACTGCTGAGGGTGCCTCATGG TGCCAGAAGCAAACCTCGACCTTCGGCATTCATGCACCTCCTTCGCTTCC AGCAAGTAGTAGTGCACGATCGCACGCTTTGCCCTGGTGAAGTGTTTTTT CATGGTATCTGATTGCAGTCATCACCTTTTTTTTGCTGCAGCCGGGTTTG TTTTCATCGCCCATCCCCACCCAACGCAGGACGTTACAGCTATTTCCAAA GGCCAGTAGCTGCCAACGTGCTTAACAGGATCAACTACCAACACGTCATA GCGCGCACGGGATTTTGCCCGCCCACCGTAGTCACCCTCGTCGCCTTACC CCTCCTGGTTTGAGCAGGACGGAGGAGATGTTCCAGCACCTCTTGGAGCC TGCCACGGCGGTTAACATGATCGTCTTCAGGGCGTTCGGACTGCTCACGG GGTGCGTCACCTTGCGAGGCGACTTTAAGGTGCGCAGGCCCTTTGTCGCT GTATGGCATCGTCATGTTCTGGTTGAGGATACGCCCCGACACATTGACAC GTTTGCATCGGTTCAGAAACAAACAAAGACGGAATATGAGGCGGTGTTGT CTTCAGCAAATTATGCGACCGTGGAGTATCACGTTGTTTTTAGCATTCTG CAAGAGGTAACGGTACCGTTAGTCGAAGGACGCGAAAACGCGCGCCTGAC TAAGGGGCTGCGACCCCAACAATCTTGCCCGTCGACAGAGGAAAGCACTC ATCCTTCCCACGGTTCTCGGTTTCTTTGTCTAGTATCCGCCTGCAAGCGT GTGCTGCAGGCGGTATTGTGAACGCGGTGGCTTGTGGGGTGCTGCTTGCT TACTTCTTGGTTGGTGTGTTGCGTCTAGCTGCGATATTGTGCATGCGGTG TGGCATGGTGCGGTGTGGTTTTTGCTGCCTTTTGCGTTTGTTTGTTGCAT TGAGCTGCTGCTGGCGCGCCATCTCGAAGCAGCTATATGCATGTGTGTTT CCACTTTGCTGCCGCCCGGGCCGTTGTCTGCTAGGTGCGTCTCCACCAGG CGTGAATGTGTATATCAGAAACAAAAGACCGCCGAAGCGACCCATCTGTC TCTGAACACTCGCCGCCGACAAAGAAGTCGCCGCGCGAAAAACTTGACCG CCCATGCCCACTTTGCTCTTATAAGAAAAGTTGCGCGTTTCATGTAAGCT AGTTTGGCCAGCTGATCGCCCGTCGTGCTGCGCCCGACTTTTGGCGGCGT GTGCATACTTACATAGGCAATTCCGGACAAGCCTAACTTTGTCAAGGCTT CCTTCGGGCCGCCGCTGATAAACTTCCTGGGAAAACACGGCCTGACGATT CGGTCGGGGCCGAAGAGCAGCGTAAGACTTGCGGCAACCTACGTGGATGA GAGGGTGAGTGCTCGCTTATTGGGCGGGGGGGGGGGGGGGGGACTTTTTT TGTTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14998:622..4226+

>mRNA_Ecto-sp13_S_contig14998.3782.1 ID=mRNA_Ecto-sp13_S_contig14998.3782.1|Name=mRNA_Ecto-sp13_S_contig14998.3782.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=762bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14998:622..4226+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGGAACGCGGTGTGGGTACTCCTGCTCATCACATACCCACCGGTGCT
CTCCTTCTCATTTGCTGGGGTTGCACTCCAAGGCAACAAGGCAGGGGTTC
GGAGAGCGGCGCGGAGGGTGTTGGTGGAGACGGCCGCGTCGTCTGCGGAG
GCCGGGCCACCTCCAGCGATCGGCGGCGATGGTCCTGCGAATGACGGGAG
CGCGGCGGCGGAGCTCGTGACCTCTCTGCTGGGGAAGATCGAGGGCACGA
ACAGAGGAGTGGACTGCACGCCCGAACAACAGAAGGAGATTGATGGAATC
ATCGACCAGCTCAACACCTTGGGCGCGGACAAAGACTGGTTGAACGACAG
TCGCGTCTTCGGCAACTACAACGTTGCCTACGTGAGCTCGGGCCCCTCGC
AGCGGGGTAACCCAGCGGGAGGCCGTTGGAGGGGCCGGGTAGGCCGCTCT
CTATTCAGCAGGACGGAGGAGATGTTCCAGCACCTCTTGGAGCCTGCCAC
GGCGGTTAACATGATCGTCTTCAGGGCGTTCGGACTGCTCACGGGGTGCG
TCACCTTGCGAGGCGACTTTAAGGCAATTCCGGACAAGCCTAACTTTGTC
AAGGCTTCCTTCGGGCCGCCGCTGATAAACTTCCTGGGAAAACACGGCCT
GACGATTCGGTCGGGGCCGAAGAGCAGCGTAAGACTTGCGGCAACCTACG
TGGATGAGAGGGTGAGTGCTCGCTTATTGGGCGGGGGGGGGGGGGGGGGA
CTTTTTTTGTTT
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