prot_Ecto-sp13_S_contig14948.3756.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14948.3756.1
Unique Nameprot_Ecto-sp13_S_contig14948.3756.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length273
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14948.3756.1 vs. uniprot
Match: A0A6H5JP22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP22_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 3.770e-59
Identity = 112/123 (91.06%), Postives = 115/123 (93.50%), Query Frame = 0 
Query:  151 DLTTLXXXXXXXXXXXIQIDVNGNPNLECLPPTPEATTDVIGYTGASDVCGCELSDGTSPCGQDPACSPGSEGYTCGDTSLDSLVPTPSPAPAMEAQTCSNGLAGYEKSGACCSVGCGACGGE 273
            DLTTLXXXXXXXXXXXIQIDVNGNPNLECLPPTPEA T+VIGYTG +DVCGCELSDGTSPCGQD ACSPG EGYTCG+TSL SL PTPSPAP MEAQTCSNGLAGYEKSGACCSVGCG CGGE
Sbjct:  302 DLTTLXXXXXXXXXXXIQIDVNGNPNLECLPPTPEAMTEVIGYTGVTDVCGCELSDGTSPCGQDLACSPGPEGYTCGNTSLASLAPTPSPAPVMEAQTCSNGLAGYEKSGACCSVGCGTCGGE 424
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BLAST of mRNA_Ecto-sp13_S_contig14948.3756.1 vs. uniprot
Match: D7FY01_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY01_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 5.870e-42
Identity = 94/123 (76.42%), Postives = 96/123 (78.05%), Query Frame = 0 
Query:  151 DLTTLXXXXXXXXXXXIQIDVNGNPNLECLPPTPEATTDVIGYTGASDVCGCELSDGTSPCGQDPACSPGSEGYTCGDTSLDSLVPTPSPAPAMEAQTCSNGLAGYEKSGACCSVGCGACGGE 273
            DLTT XXXXXXXXXXX +IDVNGNPNLECLPP PE TTDVIGYTGA+ VCGCELSDGTSPCGQDPACSPG EGYTC                   AQTCSNGLAGYE SGACCSVGCG CGGE
Sbjct:  302 DLTTXXXXXXXXXXXXXEIDVNGNPNLECLPPAPEPTTDVIGYTGATGVCGCELSDGTSPCGQDPACSPGPEGYTC-------------------AQTCSNGLAGYENSGACCSVGCGTCGGE 405
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14948.3756.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JP22_9PHAE3.770e-5991.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FY01_ECTSI5.870e-4276.42Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 1..17
e-value: 370.0
score: 0.4
coord: 18..41
e-value: 0.093
score: 21.8
coord: 66..89
e-value: 8.7
score: 13.7
coord: 115..138
e-value: 0.01
score: 25.0
coord: 42..65
e-value: 0.36
score: 19.9
coord: 139..162
e-value: 0.063
score: 22.4
coord: 90..114
e-value: 12.0
score: 12.7
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 92..152
e-value: 6.9E-10
score: 38.6
coord: 4..55
e-value: 3.8E-8
score: 33.0
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..187
e-value: 1.7E-48
score: 167.1
NoneNo IPR availablePANTHERPTHR24366:SF102LEUCINE RICH REPEAT CONTAINING 15coord: 58..184
coord: 2..101
NoneNo IPR availablePANTHERPTHR24366FAMILY NOT NAMEDcoord: 2..101
NoneNo IPR availablePANTHERPTHR24366FAMILY NOT NAMEDcoord: 58..184
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 2..181

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14948contigEcto-sp13_S_contig14948:3..4289 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14948.3756.1mRNA_Ecto-sp13_S_contig14948.3756.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14948 3..4289 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14948.3756.1 ID=prot_Ecto-sp13_S_contig14948.3756.1|Name=mRNA_Ecto-sp13_S_contig14948.3756.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=273bp
YLFENKLTSLPEGIFGSLASLTNLSVGANDLTMLPEDIFESLTSVTHLHI
QDNPLLMLPEGIFRSLTSLTTMSISTTSLTTLPERIFQYLTSLSTLWIRD
NHSLMALPEGIFQSLTSLAILNLSTNKLIALPEKIFQNLTSLEYLWIRNN
DLTTLPMGIFKSLTSLIQIDVNGNPNLECLPPTPEATTDVIGYTGASDVC
GCELSDGTSPCGQDPACSPGSEGYTCGDTSLDSLVPTPSPAPAMEAQTCS
NGLAGYEKSGACCSVGCGACGGE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf