mRNA_Ecto-sp13_S_contig14948.3756.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14948.3756.1
Unique NamemRNA_Ecto-sp13_S_contig14948.3756.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14948.3756.1 vs. uniprot
Match: A0A6H5JP22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP22_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 3.770e-59
Identity = 112/123 (91.06%), Postives = 115/123 (93.50%), Query Frame = 1 
Query:  451 DLTTLXXXXXXXXXXXIQIDVNGNPNLECLPPTPEATTDVIGYTGASDVCGCELSDGTSPCGQDPACSPGSEGYTCGDTSLDSLVPTPSPAPAMEAQTCSNGLAGYEKSGACCSVGCGACGGE 819
            DLTTLXXXXXXXXXXXIQIDVNGNPNLECLPPTPEA T+VIGYTG +DVCGCELSDGTSPCGQD ACSPG EGYTCG+TSL SL PTPSPAP MEAQTCSNGLAGYEKSGACCSVGCG CGGE
Sbjct:  302 DLTTLXXXXXXXXXXXIQIDVNGNPNLECLPPTPEAMTEVIGYTGVTDVCGCELSDGTSPCGQDLACSPGPEGYTCGNTSLASLAPTPSPAPVMEAQTCSNGLAGYEKSGACCSVGCGTCGGE 424
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14948.3756.1 vs. uniprot
Match: D7FY01_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY01_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 5.870e-42
Identity = 94/123 (76.42%), Postives = 96/123 (78.05%), Query Frame = 1 
Query:  451 DLTTLXXXXXXXXXXXIQIDVNGNPNLECLPPTPEATTDVIGYTGASDVCGCELSDGTSPCGQDPACSPGSEGYTCGDTSLDSLVPTPSPAPAMEAQTCSNGLAGYEKSGACCSVGCGACGGE 819
            DLTT XXXXXXXXXXX +IDVNGNPNLECLPP PE TTDVIGYTGA+ VCGCELSDGTSPCGQDPACSPG EGYTC                   AQTCSNGLAGYE SGACCSVGCG CGGE
Sbjct:  302 DLTTXXXXXXXXXXXXXEIDVNGNPNLECLPPAPEPTTDVIGYTGATGVCGCELSDGTSPCGQDPACSPGPEGYTC-------------------AQTCSNGLAGYENSGACCSVGCGTCGGE 405
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14948.3756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JP22_9PHAE3.770e-5991.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FY01_ECTSI5.870e-4276.42Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14948contigEcto-sp13_S_contig14948:3..4289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score164.1
Seed ortholog evalue9.3e-38
Seed eggNOG ortholog2880.D7FY01
Model size819
KEGG koko:K13023
Hectar predicted targeting categoryother localisation
Exons12
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-09_002460.1
Cds size819
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01002
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14948.3756.1prot_Ecto-sp13_S_contig14948.3756.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14948 3..4289 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462797.033003-CDS-Ecto-sp13_S_contig14948:2..851681462797.033003-CDS-Ecto-sp13_S_contig14948:2..85Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14948 3..85 -
1681462797.0430634-CDS-Ecto-sp13_S_contig14948:335..3921681462797.0430634-CDS-Ecto-sp13_S_contig14948:335..392Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14948 336..392 -
1681462797.0513284-CDS-Ecto-sp13_S_contig14948:547..6251681462797.0513284-CDS-Ecto-sp13_S_contig14948:547..625Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14948 548..625 -
1681462797.059598-CDS-Ecto-sp13_S_contig14948:961..10021681462797.059598-CDS-Ecto-sp13_S_contig14948:961..1002Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14948 962..1002 -
1681462797.0676827-CDS-Ecto-sp13_S_contig14948:1162..12161681462797.0676827-CDS-Ecto-sp13_S_contig14948:1162..1216Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14948 1163..1216 -
1681462797.0756745-CDS-Ecto-sp13_S_contig14948:1804..18761681462797.0756745-CDS-Ecto-sp13_S_contig14948:1804..1876Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14948 1805..1876 -
1681462797.0836966-CDS-Ecto-sp13_S_contig14948:2212..22841681462797.0836966-CDS-Ecto-sp13_S_contig14948:2212..2284Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14948 2213..2284 -
1681462797.0917737-CDS-Ecto-sp13_S_contig14948:2523..25981681462797.0917737-CDS-Ecto-sp13_S_contig14948:2523..2598Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14948 2524..2598 -
1681462797.0998108-CDS-Ecto-sp13_S_contig14948:2843..29151681462797.0998108-CDS-Ecto-sp13_S_contig14948:2843..2915Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14948 2844..2915 -
1681462797.1078043-CDS-Ecto-sp13_S_contig14948:3414..34861681462797.1078043-CDS-Ecto-sp13_S_contig14948:3414..3486Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14948 3415..3486 -
1681462797.1158872-CDS-Ecto-sp13_S_contig14948:3818..38901681462797.1158872-CDS-Ecto-sp13_S_contig14948:3818..3890Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14948 3819..3890 -
1681462797.1238499-CDS-Ecto-sp13_S_contig14948:4218..42891681462797.1238499-CDS-Ecto-sp13_S_contig14948:4218..4289Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14948 4219..4289 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14948.3756.1

>prot_Ecto-sp13_S_contig14948.3756.1 ID=prot_Ecto-sp13_S_contig14948.3756.1|Name=mRNA_Ecto-sp13_S_contig14948.3756.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=273bp
YLFENKLTSLPEGIFGSLASLTNLSVGANDLTMLPEDIFESLTSVTHLHI
QDNPLLMLPEGIFRSLTSLTTMSISTTSLTTLPERIFQYLTSLSTLWIRD
NHSLMALPEGIFQSLTSLAILNLSTNKLIALPEKIFQNLTSLEYLWIRNN
DLTTLPMGIFKSLTSLIQIDVNGNPNLECLPPTPEATTDVIGYTGASDVC
GCELSDGTSPCGQDPACSPGSEGYTCGDTSLDSLVPTPSPAPAMEAQTCS
NGLAGYEKSGACCSVGCGACGGE
back to top

mRNA from alignment at Ecto-sp13_S_contig14948:3..4289-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14948.3756.1 ID=mRNA_Ecto-sp13_S_contig14948.3756.1|Name=mRNA_Ecto-sp13_S_contig14948.3756.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4287bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14948:3..4289- (Ectocarpus species13 EcNAP12_S_4_19m)
TACCTCTTCGAGAACAAGCTGACCTCTCTTCCGGAAGGGATTTTTGGATC
ATTGGCGTCCCTGACAAACCTGTAAGTTGGTCGCAACTCCACATTCATGT
TTCCTGGACGGTCAAAACGGATGTGTTCACACGTTTCGTACGCCGTTGCT
AGCACGCTCGTCGAAGGGTTGGTGTGCATCGCGGTCATGTGCATGAAACC
CACGTATGGAGCACGGTGTGTGGCACATGTCACTGGTGGGTTTATGGACG
TCCGTCTGGCGAACGACCTAAACTCTACGTCAGTGTCAAGCATTGCCATC
TCTGCGCCACTCAGCTCGCCATAAATTTCAGGGCGAATCATGTTACTACA
TGGCTTGCGCAATCGTCCCCCTGAATCCTGTCGATTGTTTCGGATATAGG
AGCGTCGGAGCCAACGACCTGACCATGCTTCCGGAAGACATTTTCGAGTC
TTTGACGTCCGTCACGCACCTGTGAGTGGTTTATAGATGCGCTAGAAATC
CATGTGGTGACCCGCTGCGTCTTGGTCAAAGGCCAATCTGTTGTCACGTC
ACACTCGGAGAATGCACGATTAAATGAACAACTGGAACTCCCCCGGCACG
AAAAGGTCGGCCCGAAATACCTTCAATAGTAGCACCACGTCACCGGTAGA
GGAAGCACGGATGTGGATTATTGTAGGGCAATGTGATTTTCCCGGCCCAC
GATCTACGAGTATTGTGGAAACTTCGCCATACAACCATTCGGGTCATCAG
TGTTCACGTGCCGCTTACTCCGCCAACGCCCCTCCCCCCGCCTAAACGAA
AAGGCACATCCAGGACAACCCGCTGCTCATGCTTCCGGAGGGAATATTTC
GATCTTTGACATCCCTGACGACCATGTGAGTAGGTTGCAGCTCCAAAAGA
ACATGGCCGAGTAAAGCTGCCAGCCAGTGTTTCGCGTATACACCCTCCGG
GCTGTTAGTGCTCGTTGTTGTCGTGTATACCCTCGCAAACTGTCGCCATA
GCTGTCCCGGGCGCCGTAGCTATCCCTGCATAAGCGGTGGTACACGCCTG
GCAAGATTGCACAAGCCACGTTGTTCGCTCACGAATTATAACTGTTGTTG
CCAGCGTTTGGTCCACGAGATAAAACGGAATCGCTGGAATCGTAAACCCG
ACCGATGCAGCTACGGCCTTCCGCTGCAGGAAACCGTCTCGACGACTGCG
GTTGCCCAGATTGTGTGATACAGCCAAAATGTGACTTCATGGACATCCGC
CCACGTTGTCAAACATTGCCGCGAGCTGAGCATTCTGCCCCTGCAAGAGT
TCACCATCTGAGCACCCTTGAAAGGCTCGCGTACATACTCGCCCGTCGTC
CTCTTGACTTCGTGGAAAATGCAGGAGCATCTCGACCACCAGTCTCACCA
CGCTCCCTGAAAGGATTTTTCAATACTTGACGTCCCTTTCAACTCTGTGA
GTATGTCGTCGTTCAGTACAACGCTCGTTGGTGCCACGCACGGGGTGTGG
GGCTTGTGTTTGAACACGCTCGACTCCACACGTCCGGAATGCTAGCCAAG
TGGCTCTGTTGAGAGCCCCATTTTTGTCACGTCACGTTCGGAGAATTCCC
AGTGGGGGGAAACGTTTCTGCGCCCTAAAACGTAACTGCAGAAATACAAC
GCTTGCTTCGCACGTTTTCCCATGTCCCCTTCCGAGCCAAGCTGGATCCG
AGACAACCACAGCCTGATGGCGCTTCCGGAAGGAATTTTTCAATCCTTGA
CGTCGCTGGCGATTCTGTGAGTGCATCCGTGCTTGGAAGAACAAACTTTG
CGGAACCGTCAAAACATGAGGACACATCGCGAGCTCTTTCCAACGCTCAA
CGTTGGGATTTAGTTCGGCTGTCGACATGCCTAGGATTTGCAGATATCTG
ACCAATGACCACGAACCCTAACTGGTCATTCAGTCCAACCAAGCTAACGC
CCCCAATTTGTCGCTTCTGGCGATTCCTTCCCACCCCCCGGCAAAATACA
AACAGGAACCTCAGTACCAACAAACTGATCGCGCTTCCGGAAAAGATTTT
TCAAAATTTGACGTCCCTGGAATATCTGTGAGTACAGGAACATGTTTCCG
GGGCGATCAAAAGAGTGTCATGAGAGATGCACGCTAGGCGGAAAGAGCTG
TCCCATCTTGTTGTACTCTGGAGTACTTGACCGCGGCTGAACGCGATAGA
GGATAGCTGAGCGGTTGGCGGTTGGTTCCTCGCGTTGGTCTAACGAGAGG
GGGCAGCGCTCGTTGTTGCCATGTGCTGGGGGGAGGAGGCTACATGCGTT
CGAAGCCGCACACCCGAAAAGCTACCCAAACTCTCTCCATGTGATCCCTA
AACTCTCTCCGAAAACGTTTTCCCGGCAAATGTTTTCCAATGTATGTCCC
CACCCGAACCAAGCTGGATCCGAAACAACGACCTGACCACGCTTCCGATG
GGGATTTTCAAATCCTTGACGTCCCTGATACAAATGTGAGTGCATCCATG
CGTGGCAGTACAAACTTTGTGGAACGTTCAACACGAGGCACGCCTCGCGA
GCTCTTTCCAAGCAGTGACGTTTACGACGACACGATAAGTCGTCACACGG
CATGGTCTGTCTGTGAACGGAGAAGGTACGAAACCCTTGCTGTGGCAGAA
TGACCGGTGATTGGTTCTTCACGCCCAAGCACACGTGGCCGTACCACACC
GCGTATACAACTGATCATACCTTGAGTCTCTCAAATCCAGGTTGCATCTC
GATGGTTTCGATACTCTCATCGATATCTGCTCATCCGGCAACTTCGAGCA
AACTTCGACGAAATATCTGTAAGACTTCTGGCCAAAATTCTCGCTGTCTA
ACATGTACCTGAACCCTAACGTTACCTACCATGCTTTTGTTCCCGACGTT
GTCTGGTACCGGACCTTCTTCAAAGCTCTTAGTGATGGGAACTCCTCGAT
GGCGGTTGTTCTTTGTCATACTGAAAAGACCAAGCCCACTGTTGCTACTC
TTGCGTGCGAGCTCGCGATGTGAAGTCCTCATCGCCTTTTCCTCATCTTG
ACCTGTGTCGTCGCTCGTAACAGTGACGTCAATGGAAACCCGAATCTGGA
GTGCCTGCCTCCAACACCTGAAGCAACGTGAGGACGGCTAACTGTGAAGA
CACTCACCTTCCTATGGTTCACTGCGTGTCAAGACCCGAACGTTCGCGCG
TGTACCAAATCCAACCGAATCTGCAAGAAGTGTCTCAGTACATGTCCCCC
CGTGCGGCCCGCACTCATCGTTTGCCTCCACATAAAGGACTGATGTTATC
GGATACACTGGCGCCTCAGACGTGTGCGGTGAGTGTCGACGGTTTTGGTT
CAAAATGGGACATGCGTGTTCTTACAAACGAAGTATTTGTTAAAACGTAC
ATCCCATTGCGCAGACGCGCTCACTGTGGATCGATCAGTCACCACGAAAA
AATTCCTGAGTTCCGCGCAATCCTCGCCTCCCTGTAGCACGCTGGAAGGT
TCGGCTTCAGAGCGTAGCACTTCTTCTTTCACCCTCGTTTCCATTAGCAT
CTGGACCAATTGCACACCATCGGGGTAGCGATGAACAGTGAGTGTGAATG
TTCCGATTCGGCATCATGTAACAACGAGCTCACCTCTCAACGTGAATGGA
TGAGTTGCCTGCAGGATGTGAACTCTCGGACGGAACAAGCCCATGTGGCC
AAGACCCGGCGTGCTCTCCTGGTTCCGAAGGGTACACGTGCGGTGAGAAC
ATCACTGGTGTTGTCCGTTGATCGGACTCTAGGCTTCCTGTAGCATCACC
GTAAATTGATCGCCCCAATTTATAAAGGTCGAAACAGTTCACCAATTCCA
TGATTTTCTCTCTGGTACCTGAAGTTTCTGCCTCGCTCTTCCAACAGGCG
ACACATCCCTGGATTCCCTGGTCCCTACCCCTTCTCCCGCGCCCGCGATG
GAAGGTGAAGTGTGCAGTTACGTATCACTTGCGTATAGTCCCTCTAAACC
CAACCCCCTAACGCCGCCATCGAACGCGTTCTGCCTCGAGAACTTCAACG
ATGCTACAGAGAAACCGCAAGGTGTTCACCGCCCCAACCATTGGTTGATG
TCACAACGGGTTGTCAGTGTTGGGTGTGTTGCTGGTCATGATGCTCTTCT
CCGTGCAGCCTGGACCTCCATGCCACCGGTGTTAATCCGTGCGCACCCGA
ACAGCCCAAACGTGCTCCAACGGGCTTGCCGGTTACGAGAAATCGGGCGC
CTGTTGTTCAGTGGGCTGCGGCGCATGCGGCGGAGAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14948:3..4289-

>mRNA_Ecto-sp13_S_contig14948.3756.1 ID=mRNA_Ecto-sp13_S_contig14948.3756.1|Name=mRNA_Ecto-sp13_S_contig14948.3756.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=819bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14948:3..4289- (Ectocarpus species13 EcNAP12_S_4_19m)
TACCTCTTCGAGAACAAGCTGACCTCTCTTCCGGAAGGGATTTTTGGATC
ATTGGCGTCCCTGACAAACCTGAGCGTCGGAGCCAACGACCTGACCATGC
TTCCGGAAGACATTTTCGAGTCTTTGACGTCCGTCACGCACCTGCACATC
CAGGACAACCCGCTGCTCATGCTTCCGGAGGGAATATTTCGATCTTTGAC
ATCCCTGACGACCATGAGCATCTCGACCACCAGTCTCACCACGCTCCCTG
AAAGGATTTTTCAATACTTGACGTCCCTTTCAACTCTCTGGATCCGAGAC
AACCACAGCCTGATGGCGCTTCCGGAAGGAATTTTTCAATCCTTGACGTC
GCTGGCGATTCTGAACCTCAGTACCAACAAACTGATCGCGCTTCCGGAAA
AGATTTTTCAAAATTTGACGTCCCTGGAATATCTCTGGATCCGAAACAAC
GACCTGACCACGCTTCCGATGGGGATTTTCAAATCCTTGACGTCCCTGAT
ACAAATTGACGTCAATGGAAACCCGAATCTGGAGTGCCTGCCTCCAACAC
CTGAAGCAACGACTGATGTTATCGGATACACTGGCGCCTCAGACGTGTGC
GGATGTGAACTCTCGGACGGAACAAGCCCATGTGGCCAAGACCCGGCGTG
CTCTCCTGGTTCCGAAGGGTACACGTGCGGCGACACATCCCTGGATTCCC
TGGTCCCTACCCCTTCTCCCGCGCCCGCGATGGAAGCCCAAACGTGCTCC
AACGGGCTTGCCGGTTACGAGAAATCGGGCGCCTGTTGTTCAGTGGGCTG
CGGCGCATGCGGCGGAGAA
back to top