prot_Ecto-sp13_S_contig14935.3753.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig14935.3753.1
Unique Name	prot_Ecto-sp13_S_contig14935.3753.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	126

Homology

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BLAST of mRNA_Ecto-sp13_S_contig14935.3753.1 vs. uniprot
Match: A0A6H5LN52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN52_9PHAE)

HSP 1 Score: 229 bits (584), Expect = 8.200e-76
Identity = 120/125 (96.00%), Postives = 122/125 (97.60%), Query Frame = 0

Query:    1 QVLAVGSRLIVLGEVGEDPEGAEGDVVLRKAAPSSILDLKTTSISRPFVASIKSEQGLLQEIERSGRIHFWLALPSVAVGLAFAYVGVLRVLAAIEDRSMERPALTESGLNAPPASKGLLGWRRG 125
            QVLAVGSRLIVLGEVGEDPEGAEGDVVLRKAAPSSILDLKTTSISRPFVASIKSEQGLLQEIERSGRI+FWLALPSVAVGLAFAYVGVLRVLAAIEDRS ERPALTESG +APPASKGL GWRRG
Sbjct:    2 QVLAVGSRLIVLGEVGEDPEGAEGDVVLRKAAPSSILDLKTTSISRPFVASIKSEQGLLQEIERSGRIYFWLALPSVAVGLAFAYVGVLRVLAAIEDRSAERPALTESGHSAPPASKGLQGWRRG 126

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BLAST of mRNA_Ecto-sp13_S_contig14935.3753.1 vs. uniprot
Match: D7FLV1_ECTSI (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV1_ECTSI)

HSP 1 Score: 227 bits (578), Expect = 6.540e-72
Identity = 118/125 (94.40%), Postives = 122/125 (97.60%), Query Frame = 0

Query:    1 QVLAVGSRLIVLGEVGEDPEGAEGDVVLRKAAPSSILDLKTTSISRPFVASIKSEQGLLQEIERSGRIHFWLALPSVAVGLAFAYVGVLRVLAAIEDRSMERPALTESGLNAPPASKGLLGWRRG 125
            +VLAVGSRLIVLGEVGEDPEGAEGDVVLRKAAPSSILDLKTTSISRPFVASIKSEQGLLQEIERSGRI+FWLALPSVAVGLAFAYVGVLRVLA IEDRS+ERPALT SG +APPASKGLLGWRRG
Sbjct:  218 EVLAVGSRLIVLGEVGEDPEGAEGDVVLRKAAPSSILDLKTTSISRPFVASIKSEQGLLQEIERSGRIYFWLALPSVAVGLAFAYVGVLRVLATIEDRSVERPALTGSGHSAPPASKGLLGWRRG 342

[Close]

BLAST of mRNA_Ecto-sp13_S_contig14935.3753.1 vs. uniprot
Match: A0A836C8K9_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8K9_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 4.140e-17
Identity = 40/85 (47.06%), Postives = 59/85 (69.41%), Query Frame = 0

Query:    2 VLAVGSRLIVLGEVGEDPEGAEGDVVLRKAAPSSILDLKTTSISRPFVASIKSEQGLLQEIERSGRIHFWLALPSVAVGLAFAYV 86
            VL VG+ +IV+GE+G      +  +V+R + P ++LD+KT S++RPFVAS  SE  LL  IER+GRI+FW A+P++  G+A   V
Sbjct:  193 VLRVGASMIVIGEIGLTDHDGQETLVIRSSMPKNMLDIKTQSVARPFVASPLSESDLLNRIERAGRIYFWCAVPALVTGVALLAV 277

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig14935.3753.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig14935.3753.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A6H5LN52_9PHAE	8.200e-76	96.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FLV1_ECTSI	6.540e-72	94.40	RING-type E3 ubiquitin transferase n=1 Tax=Ectocar...	[more]
A0A836C8K9_9STRA	4.140e-17	47.06	RING-type E3 ubiquitin transferase n=1 Tax=Tribone...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 68..92
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 93..125
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..67
None	No IPR available	TMHMM	TMhelix		coord: 70..92

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig14935	contig	Ecto-sp13_S_contig14935:49..833 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig14935.3753.1	mRNA_Ecto-sp13_S_contig14935.3753.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig14935 49..833 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig14935.3753.1 ID=prot_Ecto-sp13_S_contig14935.3753.1|Name=mRNA_Ecto-sp13_S_contig14935.3753.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=126bp
QVLAVGSRLIVLGEVGEDPEGAEGDVVLRKAAPSSILDLKTTSISRPFVA
SIKSEQGLLQEIERSGRIHFWLALPSVAVGLAFAYVGVLRVLAAIEDRSM
ERPALTESGLNAPPASKGLLGWRRG*