mRNA_Ecto-sp13_S_contig14935.3753.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14935.3753.1
Unique NamemRNA_Ecto-sp13_S_contig14935.3753.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14935.3753.1 vs. uniprot
Match: A0A6H5LN52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN52_9PHAE)

HSP 1 Score: 229 bits (584), Expect = 8.200e-76
Identity = 120/125 (96.00%), Postives = 122/125 (97.60%), Query Frame = 1 
Query:    1 QVLAVGSRLIVLGEVGEDPEGAEGDVVLRKAAPSSILDLKTTSISRPFVASIKSEQGLLQEIERSGRIHFWLALPSVAVGLAFAYVGVLRVLAAIEDRSMERPALTESGLNAPPASKGLLGWRRG 375
            QVLAVGSRLIVLGEVGEDPEGAEGDVVLRKAAPSSILDLKTTSISRPFVASIKSEQGLLQEIERSGRI+FWLALPSVAVGLAFAYVGVLRVLAAIEDRS ERPALTESG +APPASKGL GWRRG
Sbjct:    2 QVLAVGSRLIVLGEVGEDPEGAEGDVVLRKAAPSSILDLKTTSISRPFVASIKSEQGLLQEIERSGRIYFWLALPSVAVGLAFAYVGVLRVLAAIEDRSAERPALTESGHSAPPASKGLQGWRRG 126
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14935.3753.1 vs. uniprot
Match: D7FLV1_ECTSI (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV1_ECTSI)

HSP 1 Score: 227 bits (578), Expect = 6.540e-72
Identity = 118/125 (94.40%), Postives = 122/125 (97.60%), Query Frame = 1 
Query:    1 QVLAVGSRLIVLGEVGEDPEGAEGDVVLRKAAPSSILDLKTTSISRPFVASIKSEQGLLQEIERSGRIHFWLALPSVAVGLAFAYVGVLRVLAAIEDRSMERPALTESGLNAPPASKGLLGWRRG 375
            +VLAVGSRLIVLGEVGEDPEGAEGDVVLRKAAPSSILDLKTTSISRPFVASIKSEQGLLQEIERSGRI+FWLALPSVAVGLAFAYVGVLRVLA IEDRS+ERPALT SG +APPASKGLLGWRRG
Sbjct:  218 EVLAVGSRLIVLGEVGEDPEGAEGDVVLRKAAPSSILDLKTTSISRPFVASIKSEQGLLQEIERSGRIYFWLALPSVAVGLAFAYVGVLRVLATIEDRSVERPALTGSGHSAPPASKGLLGWRRG 342
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14935.3753.1 vs. uniprot
Match: A0A836C8K9_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8K9_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 4.140e-17
Identity = 40/85 (47.06%), Postives = 59/85 (69.41%), Query Frame = 1 
Query:    4 VLAVGSRLIVLGEVGEDPEGAEGDVVLRKAAPSSILDLKTTSISRPFVASIKSEQGLLQEIERSGRIHFWLALPSVAVGLAFAYV 258
            VL VG+ +IV+GE+G      +  +V+R + P ++LD+KT S++RPFVAS  SE  LL  IER+GRI+FW A+P++  G+A   V
Sbjct:  193 VLRVGASMIVIGEIGLTDHDGQETLVIRSSMPKNMLDIKTQSVARPFVASPLSESDLLNRIERAGRIYFWCAVPALVTGVALLAV 277
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14935.3753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5LN52_9PHAE8.200e-7696.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLV1_ECTSI6.540e-7294.40RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
A0A836C8K9_9STRA4.140e-1747.06RING-type E3 ubiquitin transferase n=1 Tax=Tribone... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14935contigEcto-sp13_S_contig14935:49..833 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size378
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionMitochondrial ubiquitin ligase activator of NFKB 1
Ec32 orthologEc-26_001140.1
Cds size378
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462796.8360386-CDS-Ecto-sp13_S_contig14935:48..2281681462796.8360386-CDS-Ecto-sp13_S_contig14935:48..228Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14935 49..228 +
1681462796.8466012-CDS-Ecto-sp13_S_contig14935:635..8331681462796.8466012-CDS-Ecto-sp13_S_contig14935:635..833Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14935 636..833 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14935.3753.1prot_Ecto-sp13_S_contig14935.3753.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14935 49..833 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14935.3753.1

>prot_Ecto-sp13_S_contig14935.3753.1 ID=prot_Ecto-sp13_S_contig14935.3753.1|Name=mRNA_Ecto-sp13_S_contig14935.3753.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=126bp
QVLAVGSRLIVLGEVGEDPEGAEGDVVLRKAAPSSILDLKTTSISRPFVA
SIKSEQGLLQEIERSGRIHFWLALPSVAVGLAFAYVGVLRVLAAIEDRSM
ERPALTESGLNAPPASKGLLGWRRG*
back to top

mRNA from alignment at Ecto-sp13_S_contig14935:49..833+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14935.3753.1 ID=mRNA_Ecto-sp13_S_contig14935.3753.1|Name=mRNA_Ecto-sp13_S_contig14935.3753.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=785bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14935:49..833+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGCTGGCGGTCGGCTCGCGACTCATTGTGCTCGGCGAGGTGGGCGA
AGACCCCGAGGGCGCCGAAGGCGACGTCGTGCTACGGAAGGCTGCCCCCT
CCAGCATCCTGGACCTGAAGACCACCTCCATCTCCAGGCCGTTCGTGGCT
TCCATCAAATCTGAGCAGGGTCTGCTGCAGGTGTGCGCTAAGCCCCTCTT
CTTGTTGTCTTAAGCATGATGTAGCGCCAATGAAGTGTTTCCAGGAATTG
CTGTCTAAAAGAACTATGTGGTCTCGGAGCCAACAGCCCAATCTTCCAGC
AAGAAGATCCTGTGCTTCCCCGGGAGTACTATCGAAATTATTTTCGCTAC
CTTGACTTGGCCTCCTTTTGGTGGCTTATTTGTTGTTGCGCTTCTCGATG
AAAACGGGATCGGAGCACCCCATATCTTGGGACGTATTTCGTTCGCCACA
AGTCACGTCCCATGTTGCATCGGCGCTCCGGTTCGCTGTAGCCACGACCC
GTCGTGCGAGCCGTTGTCCCGCATTCCTGCCGACGTTGCTCCCACGGCGT
AACGTGCACTTGTAAATTGATGTTTCGGCACCGGCAGGAGATCGAACGGT
CGGGACGCATACACTTCTGGCTGGCGCTACCCTCCGTCGCCGTGGGGCTC
GCCTTTGCCTACGTGGGGGTGCTGCGCGTGCTCGCCGCAATCGAAGACCG
CTCTATGGAGCGCCCGGCTTTGACGGAAAGCGGGCTCAATGCCCCGCCCG
CTTCGAAGGGGCTGCTAGGGTGGAGAAGGGGTTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14935:49..833+

>mRNA_Ecto-sp13_S_contig14935.3753.1 ID=mRNA_Ecto-sp13_S_contig14935.3753.1|Name=mRNA_Ecto-sp13_S_contig14935.3753.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14935:49..833+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGCTGGCGGTCGGCTCGCGACTCATTGTGCTCGGCGAGGTGGGCGA
AGACCCCGAGGGCGCCGAAGGCGACGTCGTGCTACGGAAGGCTGCCCCCT
CCAGCATCCTGGACCTGAAGACCACCTCCATCTCCAGGCCGTTCGTGGCT
TCCATCAAATCTGAGCAGGGTCTGCTGCAGGAGATCGAACGGTCGGGACG
CATACACTTCTGGCTGGCGCTACCCTCCGTCGCCGTGGGGCTCGCCTTTG
CCTACGTGGGGGTGCTGCGCGTGCTCGCCGCAATCGAAGACCGCTCTATG
GAGCGCCCGGCTTTGACGGAAAGCGGGCTCAATGCCCCGCCCGCTTCGAA
GGGGCTGCTAGGGTGGAGAAGGGGTTGA
back to top