mRNA_Ecto-sp13_S_contig14818.3675.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14818.3675.1
Unique NamemRNA_Ecto-sp13_S_contig14818.3675.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14818.3675.1 vs. uniprot
Match: D7FPM2_ECTSI (Myst-related protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPM2_ECTSI)

HSP 1 Score: 230 bits (586), Expect = 2.340e-65
Identity = 173/194 (89.18%), Postives = 175/194 (90.21%), Query Frame = 1 
Query:  175 MTNPGARPRGRPKGSTNKKAATAAGKAKQQHQQHHLSPSVQAQEKLVDFVDLAVVPREAAKKATSRLHGSTPSRDATVAPSSNGKKGRGRPRSIFPSPDNKADGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKKKHGPSPIRGGTGSYPKRIRNAPDVFKAGPSTKPMSPSKPVTTTPASGK 756
            MTNP  R        TNKKAATAAGKAKQQHQQHHLSPSVQAQE+L DFVDLAVVPREAAKKATSRL+GSTPSRDAT APSSNGKKGRGRPRSIFPSPDNKADGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   KHGPSP RGGTGSYPKRIRNAPDVFKAGPSTKPMSPSKP  TTPA GK
Sbjct:    1 MTNPRGRXXXXXXXXTNKKAATAAGKAKQQHQQHHLSPSVQAQERLADFVDLAVVPREAAKKATSRLNGSTPSRDAT-APSSNGKKGRGRPRSIFPSPDNKADGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKHGPSPSRGGTGSYPKRIRNAPDVFKAGPSTKPMSPSKPTATTPAGGK 193
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BLAST of mRNA_Ecto-sp13_S_contig14818.3675.1 vs. uniprot
Match: A0A6H5JCM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM5_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 1.330e-48
Identity = 149/186 (80.11%), Postives = 151/186 (81.18%), Query Frame = 1 
Query:  175 MTNPGARPRGRPKGSTNKKAATAAGKAKQQHQQHHLSPSVQAQEKLVDFVDLAVVPREAAKKATSRLHGSTPSRDATVAPSSNGKKGRGRPRSIFPSPDNKADGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKKKHGPSPIRGGTGSYPKRIRNAPDVFKAGPSTKPMSPSKPV 732
            MTNP  R       STNKKAATAAGKA        LSPSVQAQE+L DFVDLAVVPREAAKKATSRL+GSTPSR AT APS NGKKGRGRPRSIFP P      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    AK KHG SPIRGGTGSYPKRIRNAPDVFKAGPSTKPMSPSKP 
Sbjct:    1 MTNPRGRXXXXXXXSTNKKAATAAGKAXXXXXXXXLSPSVQAQERLADFVDLAVVPREAAKKATSRLNGSTPSRAAT-APSFNGKKGRGRPRSIFP-PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHKKAAKNKHGSSPIRGGTGSYPKRIRNAPDVFKAGPSTKPMSPSKPT 184
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14818.3675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPM2_ECTSI2.340e-6589.18Myst-related protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5JCM5_9PHAE1.330e-4880.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14818contigEcto-sp13_S_contig14818:2762..3929 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score232.3
Seed ortholog evalue2e-58
Seed eggNOG ortholog2880.D7FPM2
Model size767
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.peripheral T cell tolerance induction
EggNOG OGsCOG0553@1,KOG0383@2759
Cds size591
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462790.7498844-UTR-Ecto-sp13_S_contig14818:2761..29351681462790.7498844-UTR-Ecto-sp13_S_contig14818:2761..2935Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14818 2762..2935 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462790.7629123-CDS-Ecto-sp13_S_contig14818:2935..34291681462790.7629123-CDS-Ecto-sp13_S_contig14818:2935..3429Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14818 2936..3429 +
1681462790.773096-CDS-Ecto-sp13_S_contig14818:3832..39291681462790.773096-CDS-Ecto-sp13_S_contig14818:3832..3929Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14818 3833..3929 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14818.3675.1prot_Ecto-sp13_S_contig14818.3675.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14818 2936..3929 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14818.3675.1

>prot_Ecto-sp13_S_contig14818.3675.1 ID=prot_Ecto-sp13_S_contig14818.3675.1|Name=mRNA_Ecto-sp13_S_contig14818.3675.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=197bp
MTNPGARPRGRPKGSTNKKAATAAGKAKQQHQQHHLSPSVQAQEKLVDFV
DLAVVPREAAKKATSRLHGSTPSRDATVAPSSNGKKGRGRPRSIFPSPDN
KADGGGGGGSSSNSSKKRKAREADESSEEASATGGSRKYHKKTAKKKHGP
SPIRGGTGSYPKRIRNAPDVFKAGPSTKPMSPSKPVTTTPASGKSTS
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mRNA from alignment at Ecto-sp13_S_contig14818:2762..3929+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14818.3675.1 ID=mRNA_Ecto-sp13_S_contig14818.3675.1|Name=mRNA_Ecto-sp13_S_contig14818.3675.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14818:2762..3929+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCCTTGGCGATTCCGGCTCACGGCACAACAACCACGCCGAGATTGCGCA
GGGATTGCCCTTTTCCACCTCGCTTCGTGTCTGCGTTGTACTGGTGTCTC
TGTGGAAGACTTTTGCCAGAGGTGTGTCCGCCGCGTCTCTGAATTAAAAA
AGAAACGGTCGACTTTCTTGAACGATGACCAACCCCGGCGCGCGGCCAAG
GGGCAGGCCGAAAGGCAGCACCAACAAGAAGGCCGCGACCGCCGCGGGCA
AGGCGAAGCAGCAGCACCAGCAGCACCACTTGTCACCATCCGTGCAAGCA
CAGGAGAAGCTGGTCGACTTCGTGGACCTCGCGGTCGTCCCGAGAGAGGC
TGCCAAGAAGGCCACGTCCCGGCTGCACGGGAGCACGCCCTCCCGTGACG
CGACTGTTGCTCCTTCCTCCAACGGCAAGAAGGGCAGGGGAAGGCCTCGC
TCCATCTTCCCCTCCCCCGACAACAAGGCGGACGGCGGCGGCGGTGGCGG
CAGCAGCAGCAACAGCTCGAAGAAGCGTAAGGCTCGCGAGGCGGACGAGA
GCAGCGAGGAGGCATCTGCTACCGGCGGCAGCAGGAAGTATCACAAGAAG
ACGGCCAAGAAGAAGCATGGGCCGAGCCCTATCCGAGGCGGCACCGGCTC
GTACCCGAAGAGGATAAGGTGCGTGGGAGAGAGGTGTACCACAGGATGGG
AGACGGGGGCGGCGGTGGGGGCGGGTATCGCGTTTGCTCAACAAGTGAAC
AGCAGATTGCCTTTGCTTGACAAGTGTAGTTCTTGCCTCGTGCGTGCTCC
ACTTACGTGTCCTGCGTCAAGCACACTCGCTAGGCAGTCACCGCACCCAC
CACGCACTCTTCCCTTCGGGGATGCCTGCCATCACAGCAGTAGAGCTGGG
ACCTGTTGTACTCGGCCTGGTTGGACCTTCTCCTCTCCGTTGTGACTACG
CCGTCGCTGTTACGCGCCCTTCCAAAATCAATGCTTCACACCTGGAATTC
TCCGCCCTTTTGAACATTCTTGTACGGATTGCACTTCCCTTTTGTGCATA
AAATTCAAAATTTGAACGAAGGAATGCCCCGGACGTCTTCAAGGCCGGGC
CGTCGACCAAACCGATGTCGCCTTCCAAGCCCGTGACAACGACTCCCGCT
AGCGGGAAGTCCACCAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14818:2762..3929+

>mRNA_Ecto-sp13_S_contig14818.3675.1 ID=mRNA_Ecto-sp13_S_contig14818.3675.1|Name=mRNA_Ecto-sp13_S_contig14818.3675.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=591bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14818:2762..3929+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCAACCCCGGCGCGCGGCCAAGGGGCAGGCCGAAAGGCAGCACCAA
CAAGAAGGCCGCGACCGCCGCGGGCAAGGCGAAGCAGCAGCACCAGCAGC
ACCACTTGTCACCATCCGTGCAAGCACAGGAGAAGCTGGTCGACTTCGTG
GACCTCGCGGTCGTCCCGAGAGAGGCTGCCAAGAAGGCCACGTCCCGGCT
GCACGGGAGCACGCCCTCCCGTGACGCGACTGTTGCTCCTTCCTCCAACG
GCAAGAAGGGCAGGGGAAGGCCTCGCTCCATCTTCCCCTCCCCCGACAAC
AAGGCGGACGGCGGCGGCGGTGGCGGCAGCAGCAGCAACAGCTCGAAGAA
GCGTAAGGCTCGCGAGGCGGACGAGAGCAGCGAGGAGGCATCTGCTACCG
GCGGCAGCAGGAAGTATCACAAGAAGACGGCCAAGAAGAAGCATGGGCCG
AGCCCTATCCGAGGCGGCACCGGCTCGTACCCGAAGAGGATAAGGAATGC
CCCGGACGTCTTCAAGGCCGGGCCGTCGACCAAACCGATGTCGCCTTCCA
AGCCCGTGACAACGACTCCCGCTAGCGGGAAGTCCACCAGC
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